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2024-04-28 03:30:20, GGRNA.v2 : RefSeq release 222 (Jan, 2024)

LOCUS       XR_008550395            9002 bp    RNA     linear   MAM 29-MAR-2023
DEFINITION  PREDICTED: Talpa occidentalis NRDE-2, necessary for RNA
            interference, domain containing (NRDE2), transcript variant X3,
            misc_RNA.
ACCESSION   XR_008550395
VERSION     XR_008550395.1
DBLINK      BioProject: PRJNA674757
KEYWORDS    RefSeq.
SOURCE      Talpa occidentalis (Iberian mole)
  ORGANISM  Talpa occidentalis
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Eulipotyphla; Talpidae; Talpa.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_023601104.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_014898055.3-RS_2023_03
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Gnomon; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 03/24/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9002
                     /organism="Talpa occidentalis"
                     /mol_type="transcribed RNA"
                     /isolate="TD23"
                     /db_xref="taxon:50954"
                     /chromosome="Unknown"
                     /sex="male"
                     /tissue_type="spleen"
                     /dev_stage="adult"
     gene            1..9002
                     /gene="NRDE2"
                     /note="NRDE-2, necessary for RNA interference, domain
                     containing; Derived by automated computational analysis
                     using gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 Protein"
                     /db_xref="GeneID:119239287"
     misc_RNA        1..9002
                     /gene="NRDE2"
                     /product="NRDE-2, necessary for RNA interference, domain
                     containing, transcript variant X3"
                     /db_xref="GeneID:119239287"
ORIGIN      
aaagcctcatgtgttgggagtgtgcatttcatgcccatgggctgggatgtgtgaatacttgttgccttttaggccatacaagcgacatggctctgaagctgtacaagaggatctcatacgagttttagagtatgaactagactggctgagcaacccaagcttttgtgttggaaccatagcatctctgagcccacaaactgaagaggccacagcccctgttttggaggggtcgctgctgacaagaagtcctctgaaatcagagccttcagatgaaagtgactttaacaaaaagttcaaacaagcaagccgaaaaaagaagaaagagaagaagaaaaaacggaagcatcagcatcataagaagaccaagagaaaacgtgggcagtcgagctgcagtggatctgagccagatactgactctgaaaagggcaaatcttccaggagcactcaagacagtaaaaaagaatcagagaaattgaatcaggaaaacaatgctgctgctgatgttggccatcgctttgtttggcttgaggacgtccaggctctgacaggagaaaccttcagaacagataagaaaccggatcctgcaaactgggagtataagtccctctaccggggagacatagcgagatacaagaggaaaggagactcctgccttggcattaaccctaagaagcagtgcatatcttgggagggggctcccacagagaagaggcgctcgcacaggcatgtggagcgctactttacgaagaagagcgtgggcttgctgagcatcgacggggttgccatcagcagcacagcagagccgccctcctcggagccagtctcgttcatcccggtgaaggattcggacgatgtgggtccccccgttacaacctggctgaatcctctgggcatctatgatcagtccaccacacagtggttacaaggacagggtccttcagagcaggagctgaagcagccggacgcacagccagacagggagagtgcgcttctcaaggctaaggtggaggagttcaacaggaaggttcgggaaaatcctcgggacatccagctatggatggcatttgttgattttcaggacgaggtcatgagaagtcctggcctgtatgccatcgaggagggtgagcaggagaagcgcaggaggtcgctgaggctgactctggagaagaagctggccattctggaacgggccatcgaaagcaaccagagcagtgtggatctgaagctcgccaagctgaagctctgctccgagttctgggagccttcaacgctggttaaggagtggcagaaactgatatttttacaccccaacaatactgccctttggcagaagtaccttttattttgccagagccagtttagcaccttttccatatccaaaatccacagcctgtacgggaagtgtttgagcaccctgtccgccgtcaaggatggcagcatcttgtctcaccccgccctgcccggcaccgaggaggccatgtttgcgctcttcctgcagcagtgccacttcttgcggcaggctggtcatgcggagaaggcggtctccttgttccaggccatggttgacttcaccttcttcaaacccgacagtgtgaaagatctgcccaccaaaggacaggtggaattctttgagcccttttgggacagtggagagccccgggctggggagaagggtgcccgaggctggagagcgtggatgcaccagcaggagcgcggtggctgggtgatcatcactccagatgaggatgacgatgaaccagaagatgaagaccaggaaatcagagataagacactgcccaagtggcagatctggctcgcagctgagcggtcccgagaccagaggcactggcggccgtggcgccctgataaagccaagaagcagactgaggaagactgtgaggatccagagagacaggtgctgtttgatgacattggacaatccctgatcagactctgcagccgggatctgcagtttcagctggtcatggccttcctacagttcctgggcgtgccctctggcttcagccccccggcctcctgcctctatctggccatggacgagagcagcatctttgatagtggactttacgatgaaaagccattgacttctctcagcctttcgttttccggcgtcagctgtgtgggccgcacggacccactgggctgccggcgctggaccaggggtcacaatcgagaaggcgaggagttcatccgcaacctcttccaccttgtgatgcctttgttttcaggcagagagagttctcagctctgtttctcctggttgcggtacgagcttgcaaaggtcgtttggtgcctgcgcactaaaaacaagaagagattaaagtcacaaggaaagaactgcaaaaaactagccaagaatctccttaaggagccagaaaatcgtaacaatttttgcctctggaagcagtacgcacatctggagtggttgctgggcaacacagaggatgccaggaaagtttttgacacagcgctcagcctggcggggggcagagggctgaaggactgcgagctcgctgagctcagtctcctctacgcggagctggaggcggagctgctgcccgacgcaggcagggccgccacggcccgagctgtccacatactgaccaggctgacggagagcggcccctacgggtcctacgccggccaggtcatggccgtgcacattttgaaagcccggaaggcttacgagcacgcactgcaggactgtctgggcgagggctctgcctctgacccggctccctgcagctccgacccggcacccagtggctccgatcccgctcccagcagctcctctagccgcctagttagtgtggccaagtgctttatgctcttccagtatttgaccgtaggcatagatgctgctgtgcgtgtgtatgagcaagtgtttgccaaactgaaggactcagtttcccccgaagaccgtgacctggtggcgagtgccagccccccgagtctaagccgtgacctggaacccctcacgctgctgcacacgagcctgctccgcttccacatgaccgtcagcgtgtacccgctggcgccgctgcgtgaggcgctctcagaggctttaaagttgtatccggacaaccagcttctttggaggtcttatgtacagattcaaaataagtcccacagtgccagtaagaccagaagattctttgatgccatcatcaggtctgccaaacccttggagccgtggttgtttgctattgaagccgagaaaatgaggaaaagactggtggaaacggttcagagggtcgatggtaaagaggtctatgccacaattcccgagaccggcctaacacaccggatccgaggcctgtttgaaaacgccatgcggagcgagcatgccagccagtgccccctgctgtggaggatgtacctgaattttttggtttccttaggaaataaagaaagaagcaaaggtgtgttctacaaagcgcttcagaattgtccctgggcaaaggtgttgtacatggacgctgtggagcacttccctgacgagatgcaggagatcctggacctgatgaccgagaaggagctacgggtgcgcctgccagtggaggagctggagcttctgcttgaggactagggccacgccactgaggccgcggcggagccaacatgcaggagacagtcagcgcgcctgccatggtgaacacacccactccgtcgcttcttggcgtcccgcatatcctcggggtctccagttgaggtctgagatcagtttggacttactcagcactaggacctcctccctgggctgcttaagagtgctgagaccccccaagctgtgcctaaaacttcaaacgaaaagctgtatttcctccttctgaagccacatgaaccaagctttgttgcctgaataacaaagaccaccagctatgccctgcttttccttagctgcttttgtgtgtgtccaccacagcgctaggggtgtgatgtagggcaacagggactgaagtctgcacttggtaattgcccagaagcttcctagcacctgacctgcccacttgctgctgctgagtggcaggtgagaaggctccagaaacaggtggaggtgttgagaaaaagcacaatttattgcgagagcactgcatgtgaccgacagacggaagcagcccggtgggcacactacacaccatgctcaagaaggtacacaggacgtctgctaatcaagattcaagtggaacgtggattcctttgggcaacttccccaacctcatccctcaaggggtcagcacactcccctgacaggcaactctgactggctagagatagagcccctcgggggtgccttcttgttttttataaagaacattttctttagattttttgaaatcttcatttgttactttcattctgcgttctctcaaggccatcagaccagcttcagtacagattgcctgtaagaaagaacagtatgttcagaatcaaatactttttatttttagtctaacaaataattcagagagagctattctgaaataagatataagacacccagactggaaacacagtgttcaagccgtctgggaaaatattaaatgttgaatttcaagcatcctaattattttctccaaggatcggaggtgccttaagctggagtaactaaggaagaggactggcccagaatagaggctttgggttccaaccagttgtgtggcccagccagtgcgttctcacagccctgcatttgttcgagtagtaaatattcctaggaaaacagatgaaatcatacctgggaagttaaaggcaatctagagtctatttctacagtcctgagagaccatacagtactgtgctaatactaaaagcaaaaccccatggaacagagtcatgagtcctggcactgaagccctctcactgccgccgccaggacgccgatttcaaatggcccagcagaaaggcgatgcctcacttcagcacaggtgtcggcatggacaggccgcacgtgcgccgtctctgccgaccttggcatttatccctgagaaactaggcactcccaagaggagcaggtggtatccagatgcaccgcctaagcctcactggtcatatcctaactcatacacgggaaaaagccaagaggtacaaactggggcctgaacgcagaggtgtaggtgcttgccctgtggctcagaggtgagctcttccagccaataccacctccccacctgggcccgagcagctatctctgacacccctcacagagtaacctgggcctagaagaggctgcagtaaacatagtgccagagatttatgcttgtgaccataggtgacttagggtcatttatttcctaaaatacttcaaaagtgaatctcctatttgagcataaggaaaggtgacctgacaattacaaagctaaaacccagacagcacataccgtgcttaactatcaccccaaaagcacacactatctcccaactgatagggcccaaccagctcaggttctcaccttgatgtcggcaccagagaggtcatctttagccatgatcaagtcgtccagggtgacgtcatcagccagtgtcatccggcttgtgtgaatctgaaagatgcgcttcttagtcttttcatcgggcagggggaactcaatcttcctgtcaatgcggcctgcaggtacaaaagggtttcagtcatacccccagagagaggccttagctcacactgcaatttcagccagacaagtgtcctgtgggaagaatgcccaaattgtgacaagctcacgtttgtttctatagtttgtcattttctatactaacttcatcccatttaaaggaaatcctttgctctgtaccttctgaaacaaaagaaaagattggtcccggaatggcatttttagtggaaaaggacatatcaagcttaggacacctaatgctccacaatgagacagacgcgaaccttacctggtctgataagtgctggatccaaagtctctatccggtttgtggccatgataactttcacatcgccccttgaatcaaacccatccagctggttcaacagttccaacattgttcgctgaatttctctctcaccaccagaatttgagtcatatctttagaaatgatgaaaaggaatgaagttaaactaatctccttcaacattctggtctcaactgagtgtcactccctcaattattctagcataaaaatcagcagcaatccatcctgactggccaagttattttcacagtatttgctttgtggcaatttacaattacctattctgtctccacgtttggggcatgatcccctaacccgactgtcagcacctcaagggcagagactgtgatcatggctggggcccccgggtcccaatggtgcctggctcggagcagtctccaggcagtccagttcccagttcctggacagttagaacctggcacttgggaaaacagagcctcaagcatccagagagcacacacagcaggaactgtgcagcccagcggggaaggaaaagctacatggttcttgcctctaagcactgccaaaaaggtgagagaaaggttacctttttgtgccaatggcatcaatttcatcaataaacacgatggatggtgcgtgttcttcagcaactctgaacagttcccgtacgagtttaggcccatcgcctaggtacttctggataagttctgagccaaccactctcaagaaagtggccgaggtttggtttgctactgctttggctaataaggttttacctattttaaagaaaaaacaaaaaaaacttttaaacttaaaaactctgttactactttaagtggacatcgacggtgggcagacctcagagatagaaaggagccaccatccaggcgtcttgacatactccaaagtaggtaagaggaaatttttaaaaatacctactagatgacgttttggtcatttttaactattttcatcatcgtaatgacagaggatccttttcattggttattccaagttgcatctattagcctaacccattcatcccaggattagagaaccaaactacatttctatgaagcgctcagtgataatggtctgggaattccaggtttgacctgaaggaacatagtctgtggtgtggcccttaggaggaaattctcacccatctcagggaagacctcattcatttccagtcttgctctagtttctgatatttctctttcagatcaaaaacaaatcagcaaagagcattatgagaatgttaagagctagaaaacctttagtcccattgacagtgagctctgtgcactcacctcaggagagagaggcagagctggtaaaaagctctgggtttgaggagtagggggaggccagctggtgagtgtcacagaaaacttgatggaacatgtgacagtagtgctccctttagtcaggcaggcagggtagcaggtacagaggcttattagaaagctggactattcgagaacatcaattagggtggcaaaggacaaaaaggaacttcctaagtggacaggatcttacagtcgagctgctaggatgcttcaatggccagagatttaacacttcctcctctgccacatcccagctcctcacagtgcacaggccccagagaggacattgggctgcaggcaggaggcctgtattcctgctccaggcctactctgagctcagcctcagagctactgggccttgggcaggtcactgcctctcgaaatgcattctcccgagttgtagaatgacagactgtagcagctccaaggctgcctacagctgttaccttgggcctccagtggtagtgctcagcacagattcctgcacactttgaagtcattcaaacaatcaacccttttcctttggaattgacatggcaatgaattactaagtcctggactgtacaactcaggacagcttactacacagtgaaccaagtacatgtgggttttatctttatctactgttatattcagtactaatggaccaagagaatgaacttaatctaaacaccacaaaatagctgttaaatcaatggctctccatcatggctctcatgcttggccatactgcagagaaccttcagggaaagaaccaggaatcaatttttatttttaagctcccaaggggattccaatatacagccaagactgaatacccagtcttacctttccttacaagttattcttaataggctcacattactcacaaataattgaaaatcttgttttataacctattaatctagtatttgattgaacatagtagagaagttcttgaactgtaaatgtgttcacactgaacaatctgcatgggagtgggaggaggagtccactggtgctttctttttattgcaatcactactaccattttaacatattagctgatgtctacaatttcaagtccaagacagtcaggttacttagttcctctattacacagataaacatacttttgggtaacagttatgtttctagatgagttgcttattcaaaaatgtcccatatgtagctttgagcactctgttttaaggaaattttggcaccctcactctcaaaagatcagtagttataacgagctgaatacccagaaagcgtccaacataaaacatacatacctgtgccaggtggaccatagagaatgacccccttagggggttttatacccatctcttcataatattcaggatgagtgagaggaagctctacagattcctacagaacacaagtagtaaaaatgaaaggttttcttaactgaaattagcagcaccattattaactggcgttgagtatatctcactttaaacaaagtaagttaaactttaatgattcattagagacaatgtgcttgatttcaaccagcagcaaggacgtttgtcctacttgagcacccatgtcttctttctcaccatacagtttccctcattttccagtagtagtcagacttcccagacatctactatagctcttcttgagcaaaaccaacttcagaaagctaaaattcgggggtctccctggtggcgcaaggggttaaatctcagcactacg
//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]