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2024-04-29 04:26:40, GGRNA.v2 : RefSeq release 222 (Jan, 2024)

LOCUS       XR_005218685            5568 bp    RNA     linear   MAM 19-NOV-2020
DEFINITION  PREDICTED: Choloepus didactylus testis and ovary specific PAZ
            domain containing 1 (TOPAZ1), transcript variant X4, misc_RNA.
ACCESSION   XR_005218685
VERSION     XR_005218685.1
DBLINK      BioProject: PRJNA678727
KEYWORDS    RefSeq.
SOURCE      Choloepus didactylus (southern two-toed sloth)
  ORGANISM  Choloepus didactylus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Xenarthra; Pilosa; Folivora; Megalonychidae;
            Choloepus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051307.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Choloepus didactylus Annotation
                                           Release 100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.5
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5568
                     /organism="Choloepus didactylus"
                     /mol_type="transcribed RNA"
                     /isolate="mChoDid1"
                     /db_xref="taxon:27675"
                     /chromosome="1"
                     /sex="male"
                     /tissue_type="spleen"
                     /dev_stage="adult"
                     /country="Germany: Tierpark, Berlin"
                     /lat_lon="52.520008 N 13.404954 E"
                     /collection_date="03-Mar-2014"
                     /collected_by="Gudrun Wibbelt"
     gene            1..5568
                     /gene="TOPAZ1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 2 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:119543656"
     misc_RNA        1..5568
                     /gene="TOPAZ1"
                     /product="testis and ovary specific PAZ domain containing
                     1, transcript variant X4"
                     /db_xref="GeneID:119543656"
ORIGIN      
ggggcctcggcgggcaggacgggtggccccggacggatgaggcggccgccgcctccgggccccgtagcggccccgaggcatgaaggcgaggcacggggctcaaggaagcgaagccggagggcggtgccagggccaggcgaggcgggaatctgcggccctgtggccggtgctcgcgaggagagcaggcgaaagggaatggtggcccgggcgtctgagagagaagagatggaaagtgagaagtcgggtgaggcgtccggggctgggaaggccgcgaggcggcgagtggagggatcggagggccaggcgggcccctcgagtgaagactggccaggtattgaagcagcggaggaggcggagctccccttgcattctggaagacacaccaaggaaaaaagaaaagctaccgaagcctcaagtggtgactcacagccagggattgacctggtaaggaaggaatcattaaccagttcggaatctttccaaacagtggagtacagtgaattccaaagcatggctttcttaaagtctttgggtaaggaatgtttggtagaaggtattaaaagaagaattcgaataaaaaagtttaaaagtttagaaagcctacctctcaaaataactgaaaataagtctacacaaaatattaagattgaattccaagatgaactgtacaagaatactctgaaatgttcttgtaacagcttgtcacctggaatagaaaataattccattttaaaattacataattgcaattgtttcccccatttcaagggttgtaatgatgacaacaaccttgtatgtaaacctgatgttggatgtatgcatgtagcagaaaattccttgatgttaaagaaagaaaattttaagagtcttgcagagaagagtgacacaaatagtattcctcaacttttaaaaaatgaagaagatttaatgggagtaaataaattattgcttgaagaaagtgatttatgccaaagaacaaataatgccttatttccctgccttcaaagtgaaaaaagtaaatattcaatagaggagagcaacattgggagaaaacccaagaaaaggatgaagttgtctgaaaaagaagatgaaaccatcattgagatgaccttctctaatgtgtataacaagtctgaattagtgttacaagaaaatcaaatgtgtgccgaatataaagaagggactttagaggtgaaaaaaagtcctttaaatgttttgagaaaagtaaaccaaaatgcgctatcgccaagggatcattcattaagtctcccagaaacagtgggaaaaaacccaagtcttgaacatcatgtaaatgctatgtttcatgaaccacttttgaaagaagaactgaagaatgcttcagagcccttaggatgtaaaaacatggagtccgaagattttaagtcagtgaaaagctcaataatgaaatcacctaatgatatatctgatctttctgattaccatcatattgaacagggatcttcacaggaaaacttgggaaatgaagctgaagactcgaaattgagctgtcacagaacaatgccaatgactggcaaaagaacttggccttattattcatgtgctagaatatccatccagtgttggaaaaggggttccttgcccaagtcaaattactttcttcctaggtctcaggaaaacattagtcaagaagattttcttaaacaccaaacaaaccaaactcacttaactgattccaaattattgttacaaaattctataacagaaacaaatattgaatcttcaagtaaagaaaaattggattctaatttaaatagtttgtcttcagtttctgcaatagaacctactttaatggttttggaggaacctataattaatgatggtaaaaggatgaggtcagaggatccaagcagaagtgggtcagaggtagtttctaatactactgaagatactccattaagtaatatgactgaaagcttaacaggaagcaaaaaaaaaggtagagggaatttaacaagacttaatgtgacaatgtcttcccaggatggccaggaatcaaataactctacaggcaaaactatccatcgaaaagctgtcattgccaagcaaacacttgtggctccagacttcgttaaaatattgaacacaggacgattgactaattttaaaattcctttacttaaaaataaaacagaaaaaagaaaagtaaatgccaagtcatcggagagagaagcttatagtcccctagaacttcttgacaatttgtctggagcagaggcaagacagaacagaagtaaagaaaatgcttccacagtcacttcaggacctccgtctttgagcatacaaaatagtgtaacttcagcacaagctacttctggctctctctacagtaagaattcctgtagtatttcttcaagcttttcaaagcaaggtaataataaaccatccagttacatctctgaaccaggcaatagtgtttctaataaggaagctgtttctctcacagttgaaaataatactttttcttgtgatcctggttatatacagaaaaatccttccttttgctctaatgaacaagaaacatttggaacagtttcctctgaagttagtggtacaaaaatgactaagagcatttcagaaattaaagtggactttccagatattcttaaagcatacgaagatgatgtccttttaattgatgtaattcaagatgacccagacctctttggagtctccaatgaaggggagcccttgtatacttcagaggtccccatgatcagccagaagcccagtgtcgttgaagagcaccaatcaacagactccaagcacatggaacttccagaaaaagaagaaggcgatgacttgagagaacttctgatactggaccctggattgatgacatcagaaatttgtgattccttatcaacagcaaatgagataaaacataattccaaaagtgtgaacatttccttagaagttaccaatgagaaatctgaaaatgagaaactgggagacctcagtgaacacataaaaggttcagacttggatgagaagtgtatactttcaggcaaggtgactattcaagaagaaaaagaaaatattgaagaagtttgcaagagcaaagattccaaaaatgcagagattatggctggtgaatgtcagttaacagcactgggcccaaaacctctgtgcttaacagtgccacctttgaatctaagtgctcctcaagaggacacaatattgaagccctggatgaatgatttcagatttccaggaaaacattctctcttaaaattgaagaatcctgaaatttatgaagtatttaagagggaaaaaaatgtaggggtgttccagaagccactagggttgatgataccccatagatactgcaaatttcattttaatacgttacgtggctgtgagcgatcacaatgcaagtttgcccatgtccctgatcaaggagatgaaaaggtttgcatggatgtgtttaagaaatatataagtatcaatgagctgtgtttgctgcaacgtgcagtgagcatgtttatgaaatactacagaaagtttcctcccggcatatacttcgatttacaagtgttaaatggccttctaaactctttactcgagcattgtttattgaaagaagtttttcaggtagtgaatctcagcataatggttaaaatgctgcctgctctgaatatattactaaaaatatttgagcatgtggcaactatgaacttaaggaatgctgtacctgctttagttgatatcttttgcaagcttgttgaatctgggatggtgcttgatccagaacactttaactatattgttaaactcttataccaagtacaggcttccaaacaagaaataactgcagttctggaaatgaaatctaggttacagatgaggcaattgaaaaagaactggaagtgtgatttagattcagccttgaatgaaattgagcattgtaaagaaaaaagtgactggaccaaattgggaaatttatatattaatgtaaaaatgggctgtgaaaaatttgcagatttccagagattttgtacttgtattgctgaaacactaacaaaagactgtaaagaggagagaccagctgttcctttctgtgaatttgctgaaacagttggcaaagacccacaaaatagtgaagtagataaaactttgctggggagaatcgggatcaatgccatgtacttctatcacaagctgttgcagtggtccaagggaaggaaggtcttagataaactatatgaattaaaaatacatttcacaagtttaaaaggacttacaggacctgggaagttagcaccaagatgtcaaattgtgaatattgcagcggaaatttttctaaaaagtggaagtctagatggtgccatttgggtgttgagagagtcagaatggataatcaatacaccactgtggccttgtgatagactggatgttctcaatcgacacaatcttctctgtacaattgcacatgaaatcttagccaagagcctttacagacagacatttgaagttttacaaaatctaccaggttttcaaaattctcaagaaactgtggaggtctcacagtatagccttctttttaataaacttctggatgcctgtatagaaagcaacagtcttggtatgtcatcctccgtagcagaattcatgatttcaaagagcatccctattgatttttcctttcttagaagattaattacttctttaggaaggagctgtttatggctcaaagccagaacccactacaaaagtgctctctcattgggctgctacccaccattggagggaaatttataccgaaaacttctactgattccttcttatttatctgagattgaaatgcttttagctatcgaaatcttcctggtgtctaatgctagtagtattcagaatcctggaacttctacacagacactgcagatagttttgaaaaggtcaagtgtcctcacaacatgacaactattcccagagtgagcaatccaagagagaatgagtgaggaagaagctgcaataccttttatgacctatgtcaaaacctgaagagtctgagattttactctacctgcaaggctacaggttaacctgccatagttttatggatactagcatgagacaagactcctggattggagatagaggacattctgactcatggcacagcaagcagcatgagtatctgcatatttggtccagatgatgtctgcacattcagtggaacgtattacaggaaaataattctgagcttaggggatcccagatcttttatattgtgcagtaagcattatgccctttgcttcagagggaggcactatgtgtcttctaaggctgtaagcaaacctgtcctttgctccagagggataaactatctttgtctttcaaggttgattactgtacagacatcttgaaagtctggaaccgaaaggtagtcagtgtcactgctttcaagacttgcagaaatatgtgaagaaaaatctcggagcaaggatgattatcaagctgcagtggaaaggctaatattggctgctcgtatatcggatccaaagcttttcattaagcacatgaccg
//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]