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2024-04-29 11:52:51, GGRNA.v2 : RefSeq release 222 (Jan, 2024)

LOCUS       XR_002874125            4838 bp    RNA     linear   VRT 15-FEB-2018
DEFINITION  PREDICTED: Oryzias latipes testis and ovary specific PAZ domain
            containing 1 (topaz1), transcript variant X2, misc_RNA.
ACCESSION   XR_002874125
VERSION     XR_002874125.1
DBLINK      BioProject: PRJNA183868
KEYWORDS    RefSeq.
SOURCE      Oryzias latipes (Japanese medaka)
  ORGANISM  Oryzias latipes
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Actinopterygii; Neopterygii; Teleostei; Neoteleostei;
            Acanthomorphata; Ovalentaria; Atherinomorphae; Beloniformes;
            Adrianichthyidae; Oryziinae; Oryzias.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_019869.2) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Oryzias latipes Annotation Release
                                           103
            Annotation Version          :: 103
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.0
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4838
                     /organism="Oryzias latipes"
                     /mol_type="transcribed RNA"
                     /db_xref="taxon:8090"
                     /chromosome="11"
     gene            1..4838
                     /gene="topaz1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 3 ESTs, and 100% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     11 samples with support for all annotated introns"
                     /db_xref="GeneID:105354987"
     misc_RNA        1..4838
                     /gene="topaz1"
                     /product="testis and ovary specific PAZ domain containing
                     1, transcript variant X2"
                     /db_xref="GeneID:105354987"
ORIGIN      
gctcattatcaaacatgagcacagtggaccggaagtcctcacctgtccgactaaacactttattcccaggctcccttcacagccacagagtgtaaagtgtatgtgaaatgctgacttctctatgggcgacatgctccaatcttccagcagagtcaaactcaaccgagtcgccctgaaggacgtcattggggtcaaaatagctccgaggcggagaaaagtccagcagccgagggccgactccaaggaggaagacaagtccgtgctggaagactcgggatgtaacaaatcccctcgggatgttttatcatacaagaagggcgcagaaaacgggagagcctcgtccattgcggctcccggcggaaagcaggagaagcgcgtagacaataataggacaaactctcctggacctgcaggtttggaaggttctatgagaagatccaatggctgctttgactctgtctgccaggagtccaagttctccctccgtccacagaaaaatggttctaaacggggactgaaacgtccaagctctgacccggttcagggtaaggccaagagcaaaaagacaactgcaaagagatctgaggagagacaattgcggacaaatcccaaggttgttctttgcgactttgctaaaaattgtagcgcctgtagacgtggatgtggcgtcattttacctaaagatctcaagaacaaagctatgcgttgcttcaagcaatcgggacttcagtgttggcctggttgtgtgtttcataataaacctgaagaacagacttgcagtgcagttctggacgggaagaacatccgccaggttctgaatgaagaagttggcaataggcagatgccgctcagagaggccacagcgctcctccacagcaggttgagaaaccaagtctccacctctgctgttgcctcctcttcaaagcatgacagcgttggaaaccgctccacggacacatgttcagaaggggctggccccgtttctgaccagacggattcacaggcccacaaaagaatcaaccttggggaaatctctgggttcatccgctccagacacccagctgcaaagggaagcaacgctgctttgaagctttgtaaggagaatggacaccagacagaattatatggagcacaaatcccatcagaacccatctgtgagaaaaaccacaacgatatcccggagtctttcacctgccagagagtgaatgtgtacttcaggaaggcaccatattcatgcgctcgcaccaacatcgtctggcctttcggtaagggtcacctgagttcacatggacctttggcctcttcttcatcgaagggcgtcaatttctcagtgactgactctgtaaccgaggtcacaaatcaggtgggttcctccagcagtgccgcacttccagaaacacctttgagcaaacaggagggtggtgatgggaacgcggctgtactgtctgaaggtttaaccaacagccttcacttgcattcaaatcccactgacgacgatgatgaggatcgaacaccttcctccctggctaatgggctggaaacagacagcacctgcatgaccagctccacccttgctttttctccaccttcagacgcatccacccacggtgatcctaactgccttacatctcctttattcctgccattttcgacatatctgtctgaaaaagctgaggatgggctgaaagcagatgatacatccatgttccgttgtgaaccgtcccatctgagcacctggggttctccgtcttccttcacttcagaaaacctggactcatctcattctggtgaatcttctcttctgtttcctcaagacaaagaccagatcaacaattgtcctgcaggaaaaccggctttaaatggaaacgcagtccacctaaatagctcctctctgtgtagcttcctgaaggcgggctgcataaaagcggacacaaatcagtacatcctgccaacgctgctctctcctgttgcatcgccatgtagacctgcgtggaggaagagctgtgagcgtcaaagctcaagcagttctgatgaagaggagcaagcggaggacaagcagtcatctcctgaatgtcacaggctgcaaaaccaaactgaaggacattccagcggcaacagtactccaggaaaagccaggacttccctctggaacgttgaagatgagcgtgatggtaaggaggatgaatgtgatgaagatgggcaggctgtgggagctacgaaggaagatgcctcgcactctaaaacgaagagcccagccctatcacctgttcagaccaaggctccgccttgcgttggtgaggaggatccgcccactctggacgagatcacggcctatgaacacgacatcctgctggtggacgtgaaccaggatgaccctgacctgtttgtggattccccccaactaagtctgctgaggctgggtcccgtgcgggcttccgaggcccccaaaaagactgccccagctgccgcgaggctgccgtttgaagtgggcggagccccaggtaaagcagttcaaagcctgactcctgtgaggagggatttgtgcttcgaaggtcaggacacagcagcagagggtgacagcagaccgtggagacctcgctgcagcagcaccaccccacccagcacacagaatgcgtgccccactacagacgagcacagcagacgtgtggttcagtttgatgtcaacaacaaccatgcagacggcgtctttaaaaggatgcagcccatccagacggtcggctcttctctcagcatccccgcccagcatccatgggctagaaacgctgccggcgcggccaacttctggcgccagaagtccaattcttactgcagacagtatttcagtgagtcgctgacctgtgggttcaagatgtgccgcttccagcatctgcctgtggagggtgacgagaagttctgcgttgaaactgtgatgaggttcatcaaaaatccagcatgcctgcagaaagctggggctgtcttctccgggtactatcaaagcagcccaccgggggtgtacttctccatgcaggtgttcctgtccctcctctgggctctgctgaaagctgggatggtttctgatatcttctccattctgcgtgtcactttggcccacaacatagtgcccagccacgagttcctgctggacctttttgactttgtgcgggagaagtccctcacaggttttgtgcttgaactcctgcagctcaccgttaagatggtgaacgttggtctggagctcagcttggactgtgtgaaccacatgcctctgttccagcagacaattcatgcacacccaccagctgcagctactccacaccagaagtcgtctcccagcgctcctttaccggactgcctgagcttggctcacgccgtcattgaagtagagctctgcaccaaacaagaagactggaagcgcatgggcaaagtgttctgctccgtctgccagtcgagccatcaccccaaccaggtggagcgcatcagcggccgcattgccatcgcactgctctcagagagcaaagacaagctgtcgctgccctttgctgcctttgtggaaacagtgtttcagaacgaaggggagggaagcctggtgaagaactttgtcggcagaattggcgtctctttgatgttgagataccataaaacccaccagtggttgaagggtcgtgcggtggtggagatcatgtctgtctcaaaggtcagctacaccactacaaagggtttgtttgggaatgaggacagcgcatcacgctgcagcctggtcaccgtggcgacagagctgttcctactgagcggcagcgtggagggagcccttaacacactccgggagaacgcctggttcctgagctcctcctcctggccatgtgaccctccagatctggagaaccggactcgcgttttgaaacatctggctgagaagacgtctcacagagacactctggaggtcctcagtaacctgccaggaatcaaagaccccagtgagtgccctgacatctccaagtacgctcttctgttcaactctcacctgcaagcttgtgtggacagacagatactccctgtcgcttcagacacggtggacttcatgctgtcaaaaaagctccccgtagactacacgctgctgcagactctgttgcacaagctgggaaagcagaacctttggcttcgagcacgagaggtcttcaggcactccctgaaagcgggccactaccccggagtggtcgccccacctggtttcatgacgctggtcatcccctgtggacttggagaggtggagcaggtcctcacgctggagatgctcatcaccgttaatgcgtcgcacattctgcgtcttccagaatcctcctcctccactctcagcatcaccctcacaaggaccaacagctgtgagagcaactacctctctgcagggagccgcctcctcacagcagcttgcatcccgcaacccaaactcaccatccactacacagcggtgaactcctcccaggatcaagtcttcaagctggacgtctcctcggctcgccgctggctccgccacaatcatttgtgggccagtgaggtgtgggcacagtgaaaacgggacctcccccaaagcgtttcagcttcctgtcttgatcaggaaactcttcaaacacaatgaagtcagggactctcctgtagattcctgcagcctcctagttgaggctcgctgtcacagttcagttgaataaattccccccaaacactatactttcatcagtatcgcagtttacccacaccaagaagtgtatcactgtagcatatttctcttgtaagttcttcccatgttgacaatttcatattaaataaatccaaattgactgctg
//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]