LOCUS       XM_071536424            1221 bp    mRNA    linear   VRT 24-FEB-2025
DEFINITION  PREDICTED: Centroberyx affinis vimentin-related 2 (vimr2), mRNA.
ACCESSION   XM_071536424
VERSION     XM_071536424.1
DBLINK      BioProject: PRJNA1226274
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Centroberyx affinis (redfish)
  ORGANISM  Centroberyx affinis
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Actinopterygii; Neopterygii; Teleostei; Neoteleostei;
            Acanthomorphata; Berycimorphaceae; Beryciformes; Berycidae;
            Centroberyx.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_027281003) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_046629955.1-RS_2025_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.3
            Annotation Method           :: Gnomon; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/21/2025
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 6% of CDS bases
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..1221
                     /organism="Centroberyx affinis"
                     /mol_type="mRNA"
                     /isolate="AG114_WGS23_722 - 3"
                     /db_xref="taxon:166261"
                     /chromosome="Unknown"
                     /tissue_type="gill"
                     /dev_stage="subadult"
                     /ecotype="Tasmania"
                     /geo_loc_name="Australia: Bass Strait, Tasmania"
                     /collection_date="2023"
     gene            1..1221
                     /gene="vimr2"
                     /note="vimentin-related 2; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 4
                     Proteins"
                     /db_xref="GeneID:139658322"
     CDS             1..1221
                     /gene="vimr2"
                     /codon_start=1
                     /product="plasticin"
                     /protein_id="XP_071392525.1"
                     /db_xref="GeneID:139658322"
                     /translation="

MAMLRVSSYRKLFEEHHWSRNGGFSMQCAGQYRASTRGAAADECDCDKLDFVAAKALNKEGLSRFVQDRTIIAALNDRLARLIELARCFEEENESLECQIMELEDRLDGQKASITTTVAVPDYSLDAVVSRLRKEKDEILCDTEELNKELECLKQEYERAVQQRTFAQLERQDVAVEVDAVTAECLALREQVAIYEEQLVNMEAQHKTAVETLLEPAAGTTGAVAAIEFGSPDITPALDIKEYYCQLAESLQECSIHKERFNISLYEGRAKKVRCTSSAVVANGDGRQMVIGGAAGSKVKDSPNVMDINELKKLISELQKELAELENCNEELEDEIAMKKEAYMDEIAELECTIDEMRHQQVDYRAQMREHCEDYKELLSEKMARDLEIAAYRGLMEEEEERLCNL"

     misc_feature    199..1206
                     /gene="vimr2"
                     /note="Intermediate filament protein; Region: Filament;
                     pfam00038"
                     /db_xref="CDD:459643"
ORIGIN      

atggccatgctgagagtgtcttcttaccgcaagttgtttgaggagcatcactggagtcgaaatggagggttcagtatgcagtgtgcagggcagtaccgcgcctccaccaggggtgcggccgctgacgagtgtgactgtgacaagttagactttgtggctgccaaggcgctcaacaaggagggcctgagccggtttgtccaagaccgaaccattattgctgccctcaatgaccgcctggcgagacttattgaactggctcgttgttttgaggaggagaatgagtctctggaatgtcagataatggaactagaggacaggcttgacggtcaaaaagcctccatcaccaccactgtggccgtgcctgactacagcctggatgcagtggtgagcagactgcgcaaggagaaggatgagatcctgtgtgacactgaggagctgaacaaagagcttgagtgtctgaagcaggagtatgagcgggctgtgcagcagaggaccttcgcccagctggaacgccaggatgttgccgtggaagtggatgctgtgacggcagagtgtttggccctgagagagcaagtggcaatctatgaagagcagctggtcaacatggaggcccagcacaagacggcagtggaaactctgctggaaccggctgcagggactacaggagcggtggcagctattgaatttggcagcccagacatcactccagccttggacataaaggaatactactgccagctggccgagagcctccaggaatgcagcatacacaaggagaggtttaacatcagcctctatgagggccgagctaagaaagtgcggtgtacctcctctgctgtggttgccaatggagatggaaggcaaatggtgataggcggagctgcggggtcaaaggtcaaagactcgcccaacgtaatggacatcaatgaactgaagaagctaatttcagagctacagaaggagcttgctgagcttgagaattgcaatgaggagttggaggatgagattgccatgaagaaggaagcatacatggatgagattgcagagctggagtgtactatagatgagatgaggcaccagcaggttgactaccgagcccagatgagggagcactgtgaagactacaaggagctgctcagtgagaagatggccagagaccttgagattgctgcctacaggggtctgatggaggaagaggaggagaggctgtgcaacctgtga

//