LOCUS       XM_071527638            2710 bp    mRNA    linear   VRT 24-FEB-2025
DEFINITION  PREDICTED: Centroberyx affinis vimentin (vim), mRNA.
ACCESSION   XM_071527638
VERSION     XM_071527638.1
DBLINK      BioProject: PRJNA1226274
KEYWORDS    RefSeq.
SOURCE      Centroberyx affinis (redfish)
  ORGANISM  Centroberyx affinis
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Actinopterygii; Neopterygii; Teleostei; Neoteleostei;
            Acanthomorphata; Berycimorphaceae; Beryciformes; Berycidae;
            Centroberyx.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_027278815) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_046629955.1-RS_2025_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.3
            Annotation Method           :: Gnomon; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/21/2025
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2710
                     /organism="Centroberyx affinis"
                     /mol_type="mRNA"
                     /isolate="AG114_WGS23_722 - 3"
                     /db_xref="taxon:166261"
                     /chromosome="Unknown"
                     /tissue_type="gill"
                     /dev_stage="subadult"
                     /ecotype="Tasmania"
                     /geo_loc_name="Australia: Bass Strait, Tasmania"
                     /collection_date="2023"
     gene            1..2710
                     /gene="vim"
                     /note="vimentin; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 23 Proteins"
                     /db_xref="GeneID:139650850"
     CDS             62..1420
                     /gene="vim"
                     /codon_start=1
                     /product="vimentin"
                     /protein_id="XP_071383739.1"
                     /db_xref="GeneID:139650850"
                     /translation="

MMSSRNSSSRSASSSYSRMFGGERPAMVRSSYSSPVRSRTAYSVSSAPIHSSRTVRLRSSAPMPRLTSDTVDFSLSDAINAEFIATRSNEKAEMQQLNDRFVSYIDKVRFLEQQNKMLAAELETLRGQGRSRIGDLYQDELRDLRKQVDQLTNQRSRLEVDRGNMGDDIERLRQKLQEEMLQKEETEHNLQTFRQDVDNASLARLDLERKVESLQEEISFLKKIHEEEMVELQAQIQEQHVQIEMDVVKPDLTAALRDVRLQYENLATKNLQESEDWYKSKFADLSEQQQRNSEAIRQAKQEANEYRRQVQTLTCEVDALKGTNESMERQMRDVEDGFGMETARYQDTIGQLEEDIHNMKDEMAHHLREYQDLLNVKMALDIEIATYRKLLEGEESRIATPLPNFSSFNLRETMLEARPMIENLAKKVVIKTIETRDGHVINESTQQHDDLE"

     misc_feature    119..325
                     /gene="vim"
                     /note="Intermediate filament head (DNA binding) region;
                     Region: Filament_head; pfam04732"
                     /db_xref="CDD:461414"
     misc_feature    326..1252
                     /gene="vim"
                     /note="Intermediate filament protein; Region: Filament;
                     pfam00038"
                     /db_xref="CDD:459643"
ORIGIN      

gtgtgtgcatcagagtcgaacagaaaagtatatcataaggaccagaggattaactagcacgatgatgagcagccggaacagcagcagcaggtcagcgtcctcgtcctactccaggatgttcggaggggagcgtcccgccatggtccggtcctcctactctagcccggtccggtccaggacggcctacagcgtctcctccgcccccatccattcctccaggacggtgcggctccgcagcagcgccccgatgccccgtctcacgtcggacaccgtggacttctccctgtcggacgcgatcaacgcggagttcattgcgaccaggagcaacgagaaggcggagatgcagcagctgaacgaccgcttcgtcagctacatcgacaaggtgcgcttcctggagcagcagaacaagatgctggccgccgagttggagacgctgcggggccagggtcgctcccgcatcggagatctgtaccaggacgagctgagggacctccgcaagcaggtggaccagctcaccaaccagaggtcacggctggaggtggaccggggcaacatgggggatgacatcgagcgcctacggcagaagctgcaggaggagatgttgcagaaagaggagacagaacacaacctgcaaacattcagacaggatgtggacaatgcctcgctggcccgtctggacctggagaggaaggtggagtctctgcaggaggagatcagcttcctcaagaagatccatgaggaggagatggtggagctccaggcccagatccaggagcagcatgtccagatagagatggacgtggtcaaacccgacctgaccgctgccctgcgtgatgttaggctgcagtacgaaaacctggccaccaaaaacctccaggagtctgaagactggtacaagtcaaagtttgctgatctgtcggagcagcagcagcgtaacagcgaggcaatccgccaggccaagcaggaagccaatgagtaccgtcgccaggtccagactctaacctgcgaggtggacgccctcaaaggaacaaatgagtctatggagcgtcagatgcgggatgtggaggatggttttgggatggagactgctagataccaggacaccattggccagctggaggaggacatccacaatatgaaggacgagatggcccaccacctgagggagtaccaggacctccttaatgtcaagatggccctggacattgagattgccacctaccgcaagctgttggaaggggaggagagcaggattgccaccccattgcccaacttctcctccttcaacttgagagaaaccatgctggaggccaggccaatgatagaaaacctggcgaagaaagtcgtgattaagaccatagagaccagagatggacatgtcatcaatgagtcaacccagcagcacgacgacctggagtgaagccgatggacgagtccgcagaagaagagacgcgggagacggggtgggaggcaggggtaaaaggatgaatgataagcatgaaaaaaaaaaaaaaaaaaagatcaatagctagtaaagggacggggtaacagagtgccgaaaatgggaaggacattgtttcagtgaaagtaaaagcaaaaccaacaaaaacaggaaaaaagaatagctttaaaagtgccttttgacacgttttagtggggattgcttgctgatgccgttctagactaggcaacagtagaacagaatagagagtgtttagaagagaaggagaatccactttattgactgtttctgttgttcactactgtagtatcttcaccagtagacaaccagtacacagcaacactgggcaaattagtctcattgactacatttacgtggacagcaataatctgactattggaaacattccaattaagctgtttgcatgggttgcttatagaactattccatttatattcctgttcacatgctacggagcatagtccaattaacaggacaaaggagaatcactggagcacacacagtttaagccccttatggaagctgcggacagacttgcaaatagaatccggagcatggtgacagttttcagcctcaccccgaaaacgttgagacttcctttttctggtgtcagtcatcttttttcctctgtaaacaagtttgcaaccactggagagtagagcatgagttggcgaatactcggatagagtcatagttggattatggtgcatacaagtctaaaatgcccttcaataatgcaactaaaatcagaatactccacgtgtgaatgcaattatgatcttattcagggtaaggtaatcagaaaatgctgtttacatggcaatttcttattcagactattgtcttaattgggttaataacggattattgctgtccatgtaagcatagtcattgtgatttactaattggattcttcagaactgtatacgtctgttttatgtttccagatgagtgatgttttcaagtcggattatgttgggactgtatgtacagtatgagtgtttcgtacattcacaggttctgtacttccaggtgattaataacattgacactgatcacataactgcgagttcctgtttatgaaattttcaaaatggacttgtgactcttgtgacttgagccttcagttgatcttcaccaaatctggatagaaatccaaggctgcaccactgttgccatgtatccactcaataccaagaccaacatcactctgtcactgctatgctg

//