LOCUS       XM_071415068            2091 bp    mRNA    linear   VRT 18-FEB-2025
DEFINITION  PREDICTED: Salvelinus alpinus vimentin (vim), mRNA.
ACCESSION   XM_071415068
VERSION     XM_071415068.1
DBLINK      BioProject: PRJNA1211668
KEYWORDS    RefSeq.
SOURCE      Salvelinus alpinus (Arctic char)
  ORGANISM  Salvelinus alpinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii;
            Salmoniformes; Salmonidae; Salmoninae; Salvelinus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_092093) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_045679555.1-RS_2025_01
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.3
            Annotation Method           :: Gnomon; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 01/27/2025
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2091
                     /organism="Salvelinus alpinus"
                     /mol_type="mRNA"
                     /db_xref="taxon:8036"
                     /chromosome="8"
     gene            1..2091
                     /gene="vim"
                     /note="vimentin; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 62 long SRA reads, 20
                     Proteins"
                     /db_xref="GeneID:139583703"
     CDS             140..1528
                     /gene="vim"
                     /codon_start=1
                     /product="vimentin"
                     /protein_id="XP_071271169.1"
                     /db_xref="GeneID:139583703"
                     /translation="

MNRTTNRQTTSSSSYKRMFGGEGRPGVGMARSTLSSRQYSSPVRSSRMSYSVSSAPPSIYASKNVRLRSSAPMPRLSSDTVDFALSDAINSEFKANRTNEKAEMQHLNDRFASYIDKVRFLEQQNKILLAELEQIKGKGASRIGDLYEDEMRDLRRQVDQLTNEKAHVEVDRDNLGEDIERLREKLQDEMIQKEEAEHNLQSFRQDVDNASLARLDLERKVESLQEEILFLRKLHDEEVAELQAQIQDQHIQIDMDVAKPDLTAALRDVRVQYETLASRNLQESEDWYKSKFADLSEAANRNTDAIRQAKQEANEYRRQVQALTCEVDSLKGTNESMERQMRELEESFGCEANNFQDTISRLEDDIRNMKDEMARHLREYQDLLNVKMALDIEIATYRKLLEGEESRITTPMPNFSSFNLRESMLEARPMIDNLSKKVVIKTIETRDGHVINESTQNHDDLE"

     misc_feature    167..433
                     /gene="vim"
                     /note="Intermediate filament head (DNA binding) region;
                     Region: Filament_head; pfam04732"
                     /db_xref="CDD:461414"
     misc_feature    434..1360
                     /gene="vim"
                     /note="Intermediate filament protein; Region: Filament;
                     pfam00038"
                     /db_xref="CDD:459643"
     polyA_site      2091
                     /gene="vim"
                     /experiment="COORDINATES: polyA evidence [ECO:0006239]"
ORIGIN      

ggtctactgcagagttctcgctggggtagtactgttcggaggtttcatcacacactgaagtggaagtccagtttgagagaaggcatttacacagctttttttaagaaagaagaaaccttagggaccaaaggattacaatatgaaccggacaaccaacaggcaaaccacctcttcatcctcttacaagaggatgttcggcggcgaaggacggcctggtgtcgggatggctcggtccaccttgtctagccgccagtactcgagcccggtgcgctcctctcggatgtcctacagcgtctcctccgctccgccgagcatctacgcctccaagaatgtccgacttcgcagcagcgccccgatgccccggctctcatcggacaccgtggacttcgccctgtccgatgccatcaactcggagttcaaagccaaccggaccaacgagaaggcggagatgcagcacctcaatgacaggttcgccagctacatcgacaaagtgcgctttctggagcagcaaaacaagatcctgttagcggagctggagcagataaagggcaaaggcgcgtcccgtatcggggatctgtacgaggatgagatgagggatctgcggaggcaggtggaccagctcaccaatgagaaagcccatgtcgaagtggaccgggacaacctgggagaggacatcgagaggctcagagagaagctccaagatgagatgatccagaaagaggaagcagagcacaacctgcagagcttcagacaggatgtggacaatgcctcccttgctcgtctggacctggagaggaaggtggagtctcttcaggaggaaatcctcttcctcaggaaactgcatgacgaggaggttgctgagctgcaggcacagatccaggatcagcatatccagatcgatatggatgtggccaagcctgatttgacggctgccctaagggacgtgcgtgtgcagtacgagaccttggccagcaggaacctccaggagtctgaagactggtacaagtccaagtttgctgacctgtcggaggctgcgaatcgtaacaccgatgccatccggcaggccaagcaggaggctaacgagtacaggcgtcaggtacaggccctaacctgtgaggtggactctctcaaaggaactaatgagtccatggagcgtcagatgagggagctggaggagagctttggctgcgaggctaataacttccaagacaccatctctcgcctggaggacgacatcaggaacatgaaggatgagatggcccgtcacctcagagagtaccaggaccttctcaacgtcaagatggccctggacatagagatcgccacctacaggaagctgctggagggagaagagagcagaatcaccactcccatgcccaacttctcatcatttaacttgagagaatccatgctggaggcaagaccaatgattgacaacctgtcaaagaaggttgtgatcaagaccattgaaactagagatggtcatgtgatcaatgagtccacccagaaccatgatgacttggagtgaacatcacatagcatgtctattgagaagagaaaatagttagcagcagcatactgggggggggtgtaaaacactgtcggggatgaggagaaagcaaaatgggatatttctgtttgtgagtaaaactaaacaaacagctttgaaagtgcctttttgacacgttggggtacttgctgatctggtagggttgttgctaggtaggatagacactgtttagaggagatgaaaccagctttactgaatgtttctgtttgaccacagacaccgggcaagtctcaaatgacacatttttttctatgttatagtgctctactttttatagggctctagtgaaaagtagtgcactaagggaatagggtgtcatttgatgcaaccacactgagtctagtttacacttgagctgttagacttagaccatagcaacactttgagcaatggctgtttttttctattctaatttaccaaaatcatggaaaggattgaagcactgtttcatgtacacaaacaagaccaacaccaaactgtcaacgcttctgtaagtcaataaagctttgaggaaaataaaa

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