2025-08-20 22:04:13, GGRNA.v2 : RefSeq release 230 (May, 2025)
LOCUS XM_071062604 1035 bp mRNA linear PLN 31-JAN-2025 DEFINITION Madurella fahalii Metal homeostatis protein bsd2 (MFIFM68171_07184), partial mRNA. ACCESSION XM_071062604 VERSION XM_071062604.1 DBLINK BioProject: PRJNA1216027 BioSample: SAMD00817542 Sequence Read Archive: DRR594085, DRR594086 KEYWORDS RefSeq. SOURCE Madurella fahalii ORGANISM Madurella fahalii Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Sordariomycetes; Sordariomycetidae; Sordariales; Sordariales incertae sedis; Madurella. REFERENCE 1 AUTHORS Yoshioka,I., Fahal,A.H., Kaneko,S. and Yaguchi,T. TITLE Itraconazole resistance in Madurella fahalii resulting from another homologue of gene encoding cytochrome P450 14-alpha sterol demethylase (CYP51) JOURNAL Unpublished REFERENCE 2 (bases 1 to 1035) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (30-JAN-2025) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 1035) AUTHORS Yaguchi,T. and Yoshioka,I. TITLE Direct Submission JOURNAL Submitted (05-SEP-2024) Contact:Takashi Yaguchi Chiba University, Medical Mycology Research Center; 1-8-1 Inohana, Chuo-ku, Chiba, Chiba 260-8673, Japan COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. This record is derived from an annotated genomic sequence (NW_027263974). COMPLETENESS: incomplete on both ends. FEATURES Location/Qualifiers source 1..1035 /organism="Madurella fahalii" /mol_type="mRNA" /strain="IFM 68171" /isolation_source="Mycetoma" /host="Homo sapiens" /culture_collection="IFM:68171" /db_xref="taxon:1157608" /chromosome="Unknown" /geo_loc_name="Sudan" /collection_date="2022" gene <1..>1035 /locus_tag="MFIFM68171_07184" /db_xref="GeneID:98177927" CDS 1..1035 /locus_tag="MFIFM68171_07184" /note="COG:O; EggNog:ENOG503NW1W; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005794 - Golgi apparatus [Evidence IEA]; GO_component: GO:0048471 - perinuclear region of cytoplasm [Evidence IEA]; GO_process: GO:0006511 - ubiquitin-dependent protein catabolic process [Evidence IEA]; GO_process: GO:0007034 - vacuolar transport [Evidence IEA]; GO_process: GO:0030001 - metal ion transport [Evidence IEA]; GO_process: GO:0031398 - positive regulation of protein ubiquitination [Evidence IEA]; InterPro:IPR019325; PFAM:PF10176; TransMembrane:2 (i192-213o291-309i)" /codon_start=1 /product="Metal homeostatis protein bsd2" /protein_id="XP_070918705.1" /db_xref="GeneID:98177927" /translation="
MSGRYERVNARDEDEPETPTAPLPRPTYPIPNSPPPSFHSRPSSISSRERENGVDPDLADAFDADGDDSDDEADDRQRLVRGNSTPSFVSATQAGAASQSGAEPGRSQRPVGVVPTTSRVYGSGIQSDGVFSNLSAKPERGDGEKDELPPSYEQAAADAAPPYWETTILAPGLGGPDDVYIDGMPVGSLFGFIWNAMISMAFHLIGFLLTYLLHSTHAAKNGSRAGLGVTLIQYGFYMKSTPPGSSGGPNPQSDDDTYANPSNPNSHNFNPDEVNQGDGDGGSGDITSSDWAAYILMVVGWFILIRAVSDYLKVRRHEQLVLQSPDRGLGVPIIATGERPDTVV"
misc_feature 358..981 /locus_tag="MFIFM68171_07184" /note="Protein of unknown function (DUF2370); Region: DUF2370; pfam10176" /db_xref="CDD:401984" ORIGIN
atgtcgggccggtatgaaagggtgaacgcccgcgacgaggacgaacccgaaacaccgacggcccccttgccaaggccgacctaccccatccccaactcgccgccgccttcgttccactccagaccgtcgtccataagctccagggaaagggagaacggagtcgacccggacctagccgacgcattcgatgccgacggtgatgatagcgacgacgaggcagacgataggcagcggttagtgcgcggcaattcgacaccctcatttgtcagcgctacgcaagcgggtgcggcatcgcaatctggggcagagccgggccggtcgcaaaggccggtgggagtggtaccgaccacgtcgagggtctacggcagcggcatccagtctgacggcgtgttctcgaacctctcggcaaagccggagcggggtgatggcgaaaaggacgagctgcctccatcctacgaacaagcggcagccgacgcggctcccccttattgggaaacgaccatcctcgcgcctggcctcggcggccccgacgatgtctacatcgacggcatgcccgtgggctctttgttcggcttcatctggaacgccatgatctcgatggccttccatttgatcggcttcctgcttacctacttgctccactcaacccacgcggccaagaacggttcccgggcaggtttgggtgtcacccttatccagtacggcttctacatgaagagcacgccgcctggcagctcgggagggccgaatccgcagagcgacgacgacacatacgcgaacccgtcgaatccgaactcgcacaacttcaatccggacgaggtgaaccagggggatggcgatggcggctctggggatatcacgagcagcgactgggctgcgtatattttgatggtggttggctggttcattctgattcgggcggtcagcgattacttgaaagtgcggaggcatgagcagctggtcttacagagccctgatcggggtctcggtgttcccatcattgccacgggcgagaggcccgacacggtggtatag
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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