2024-11-01 10:30:59, GGRNA.v2 : RefSeq release 226 (Sep, 2024)
LOCUS XM_067574669 6373 bp mRNA linear VRT 22-AUG-2024 DEFINITION PREDICTED: Thunnus thynnus centriolin (cntrl), transcript variant X3, mRNA. ACCESSION XM_067574669 VERSION XM_067574669.1 DBLINK BioProject: PRJNA1130912 KEYWORDS RefSeq. SOURCE Thunnus thynnus (Atlantic bluefin tuna) ORGANISM Thunnus thynnus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Pelagiaria; Scombriformes; Scombridae; Thunnus. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_089518) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_963924715.1-RS_2024_07 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 07/03/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..6373 /organism="Thunnus thynnus" /mol_type="mRNA" /db_xref="taxon:8237" /chromosome="2" gene 1..6373 /gene="cntrl" /note="centriolin; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein" /db_xref="GeneID:137170963" CDS 347..5929 /gene="cntrl" /codon_start=1 /product="centriolin isoform X2" /protein_id="XP_067430770.1" /db_xref="GeneID:137170963" /translation="
MEEQREAGGGADSQENRGGIRYITEELLLKLSGSSSLVLVRSLNLSSSAGEKHIKFIENLHSCQRLQVLNLNHNLIQRMERLNALTQLRELQLAHNNIQRIEGLELMSSLQHLNLSYNRIDHVPVWMGRKLRSLHTLHLQHNLITSLSEVSRLRSLSSLSELSLSGNPASSLPHSRLFLLYHLRTLDRLDNQPITPEERGHAHQRFHAEELERLQHQVDSSQSQLSRLQRERQAAVTRLHQQEETNRTLTAQTETQRRTHTLLEQELHTKNQLLERTTAELTRAFHKLYELEQELTFYKIDAKLSPLPIIQEVDAVDSVAESPYIGKARHIRNTITISSSSLQTQEDSDVHTDMGSSRPLLEDCRTQQSTAEAGLQMTCQTQQQLEADLTAPEETKTHRQEVLCCLLGKLSVLDELRDEAEETSRQMDRQTEESRRTQRETEELETQLLTLDITDPQHARVTSRLASVRQLLDRMSRKQSELEGRLDDMLTRIAMETQEIKELEQQLTDGQILANEALQRDLEGIISGLQEYLRSLREQARRAQQQVHSLQDENQSLQLHLQDAQRHCRQLQDTARTHTQNMSLQQEELSVLQMEAQALRDRQVESSRQQVELEAELQQLREELSRQLTLGKLERDALQAAVDKEKQTREIRESQLQSTIDTLQDDKSSLQQIVHKLQAQLDQTEDQLHQSRTQYKETRSQLEQLSAALLDEDRTRAEDKSSPEDTLSSSVEQLYRTVQQTRTSKEQVHNQNQQQIERLQAQLAQDQEHIAQLEAQLAWDQDLVTCGVEQDQELQRLRDKLQRSQSTNRHIQHKLEAELQQSRLQLQDVQQERDALLLQLRSQSDGHQKSLARLNRKLRQLSRFMCDSDQLTSEQLRSTSEQLRALNCTVELLHTQKTVDEHDDSSHQTEHTHTLQDEHTHTLQDEHTHTLQDEHTHTLQDEHTHTLQDEHTHAVEELRAELAEAQQHASRLRQQLDQVRTRNRTRTRTRTRTRSRTRTRSRSRTRSRIRDGGQWCFIPPGHSAPSLGSQGTQDSGLGLQYLSSPERAQQQHRPPTGGGYWVYIPPAHTDSDTGAEWRDSGGGSDTDRSSRGGTPLPPPAPAAGVSEGLSDAQTPLAGPAWLLCGSPAAVVYSPPAGGAALHCNIPEHTHREGMCVCECERLREAERLEEEKKKLRLETKQLRHTLRRHRSVKLVCDEVDCVEKTLLKRRAELRQADRLLLEAQSCIHTTRDQARSAQREADTLQHRAQDSATCLLEATQHVRLALVLSDCQEAQRRLDSVNSQVEQQEQRLLQRKEEHHAALSRLKEVRQEEQRLQDAVKELWKQQEVLLSERRSSVSAVNEEEQKLLTLQSELNTHRAELKRVLQELLAEQQALEEVKTKRTQTLQRLHKKKDELDRTKDELDRTKDELDRTKDELHGTKDELDRTKDELHGTKDELHRTKDELHRTKDELHRTKDELHGTKDELHGTKDELDGTKDELHRTKDELLMKQEELDRKRDLLDGIQDEVEKKKDELVNKQHKTDQKRHKLDKMQDEVERKREELAALQQEVDSHRKESESRLKNTKQQRTELQELQEELSRRREESSSLQEQCKHLEARRRHADRCLSATEAELAKQREEHSRAQLLKQEVIRDTAAAQEQLNENSELLSLLSEQLEQKKKQLQTVEQELNESSQQQQRAEHIQHKQVSAGSDDVKAAACQLEDRGRRLNHQQLQLNQLSEQLWQREKQLLCEEEGLIHTGAGLQREGEELIQTEEGLQKKEKEEDSREVLKEEDESFYLSTAGLRSAFNTEDERWKVELQREKLRQQEDRLKARLRCSLWNQQENLEVRRLETEESLLGLKHRLDQLDSLLTHTETHTP"
polyA_site 6373 /gene="cntrl" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN
gtcattgtttcggtttctctgtgctgctgttcaataaacgtttgtcgtgttttcaagtgacaaacgtgttttttgtttacttgacgacagctaacgttacttaaaccgctttgtatccgcgggtttccatggagacggaggattaactaacccagccggccgccgtcagcgcaccgggacgagcagcctgtcacgctgtcacatctgtcacgctgtcacatctgtcacgctgtcacatctgtccagctgtcacatctgtcacgctgtcacatctgtcacgctgtcacatctgtcacgctgtcacatctgtccagctgtcacatctgtccagctgtctggtccagagatggaggagcagagggaggcgggaggaggtgcagactctcaggagaacagaggaggtatcaggtatataacagaggagttgctgttgaagctctctggttcttcgtctctggttctggttcgttctctgaatctgtcgtcatcagctggagaaaaacacatcaagtttatagagaacctgcacagctgtcagcgtctgcaggttttaaacttgaaccacaacctgatccagaggatggagagactgaacgctctgacacagctgagagagctgcagctggcccacaacaacatccagaggattgagggactggagctcatgtccagtctgcagcacctgaacttgtcctacaaccggatcgaccacgtccccgtgtggatggggaggaaactacgctcactgcacacgcttcacctgcaacacaacctcatcacatcactgtctgaggtgtccagactgcgttctctgagcagcctatcagagctgtctttgtcaggaaaccccgcctcttcgctaccacactcccgcctcttcctgctgtaccacctgaggactctggacaggctggacaaccagccaatcacaccagaggaaagaggacacgcccatcagcgcttccacgccgaggagctggagcgtctgcagcaccaggtggacagcagccaatcacagctgagcaggctgcagagggagcggcaggctgcagtgactcgactccaccagcaggaggagacgaaccgaacgctgacggctcagacagaaacacaacgacgcacacacacactgctggagcaggaactgcacaccaagaaccagctgttggagcggacgacggccgagttgactcgagcctttcacaaactgtacgagctggagcaggagctgacgttctacaagatagacgccaagctcagccctctgcccatcatacaggaagtcgacgctgtggactctgtggctgagagtccgtacataggcaaggctcgacacatcaggaacaccatcaccatctcctcctcctccctgcagacccaggaggactcagacgttcacactgacatggggtcatcacgccccctgcttgaagactgcagaacacagcagagtacagctgaggctggcctgcagatgacctgtcagactcaacagcagctggaggcagatcttacagcacctgaggaaaccaaaacacacagacaggaggtgctgtgttgtctcctcggtaaactgtccgtcctggacgagttgagagacgaagcagaggagacgagcagacagatggacagacagacggaggagagcaggaggacccagagagagacagaagagctggagacacaactactgacactggacatcacagacccacaacatgcccgtgtgacgtcccggttggccagtgtgagacagctgttggacaggatgagcaggaagcagagcgagctggagggtcgcctcgacgacatgctgacacgcatcgccatggagacacaggagatcaaagagctggagcaacagctgaccgacggtcagattttggctaatgaagctcttcagagggatttggagggaatcatttctggacttcaggagtatctgagatccctcagagagcaggctcgtcgagctcagcagcaggttcacagtctgcaggatgaaaaccagagtctgcagctccacctgcaggacgctcagagacactgcagacagctgcaggacacggccaggacacacacacagaacatgtccctccagcaggaggagctgtctgtgttgcagatggaggcccaggctctgagagacagacaggtggagagcagcagacagcaggtggagctggaggcggagctccagcagctgagggaggagctaagccggcagctcacactgggaaagttggagcgtgatgcactgcaggcagctgtagacaaagagaaacagaccagagagatcagagagtctcagctacagtcaaccatcgacacactgcaggatgacaaatcatctctccagcagattgttcacaaacttcaggctcaactggaccaaaccgaagaccagttacaccagagcagaacccagtataaagagaccaggagccagctggagcagctgtcagctgccttgttggacgaggacagaaccagagcagaggacaagtccagtcctgaggacacgttgtccagcagtgtggaacagctctacaggaccgtccagcagaccaggactagcaaggagcaggtccacaaccaaaaccagcagcagatagaaagactgcaggcccagctggcccaggaccaggagcacatagcccagctggaagcccagctggcctgggaccaggacctggtgacctgcggcgtggagcaggatcaggagctgcagagactccgagacaaactgcagagatctcagagcacgaacagacacatccaacacaaactggaggcggagctacagcaaagccgtctgcagcttcaggacgtccagcaagagagagacgctctgctcctgcagctgcgttcacagagcgacggtcaccagaagagcctcgcacgtctgaacaggaaactacggcaactcagcaggttcatgtgcgactctgatcagctgacaagcgaacaactgagatcaacctccgaacagctgagagctctgaactgcactgtggagctgctgcacacacagaaaactgtggatgagcacgacgacagctctcaccaaactgaacatacacacactctgcaggacgaacacacacacactctgcaggacgaacatacacacactctgcaggatgaacacacacacactctgcaggatgaacacacacacactctgcaggacgaacacacacacgcagtggaggagctgagagcagagctggctgaagctcagcaacatgcaagcagactgagacagcagctggaccaggtcaggaccaggaacaggaccaggaccaggaccaggaccaggaccaggagcaggaccaggaccaggagcaggagcaggaccaggagcaggatcagagatggaggccagtggtgcttcatccctcctggacacagtgctcccagtctgggctctcaggggactcaggactctggtttggggctgcagtacctcagttctcctgagagggcacaacagcagcacagacctcctacaggaggcgggtactgggtctacatccccccggcacacaccgactctgacacaggagcagagtggagggacagcggaggaggcagtgatactgaccgcagctccagaggagggactcctcttcctcctcctgccccagctgcaggtgtctctgaggggctctctgacgctcagactcccctggctggacccgcctggctgctctgtggttcacctgcagctgttgtctacagtcctcctgcggggggcgccgcactgcactgtaacatccctgaacacacacacagggaaggcatgtgtgtgtgtgaatgtgagaggctcagagaggcagagcgactggaggaagagaagaagaaactacgactggaaaccaaacaactacgacacacactgagacgacacaggagtgtgaagctggtgtgtgatgaggtggattgtgtagagaaaactctgctgaagagacgagctgaactccgtcaggctgacagactgctgctggaggctcagagctgcatacacaccaccagagaccaggccagatcagcccagcgggaggcggacaccttgcagcacagagctcaggacagcgccacctgtctgctggaagccacgcagcacgtcagactggctctcgtgctgtcggactgtcaggaggctcagaggcgtctggactcggtgaacagtcaggtggagcagcaggagcagaggctgcttcagaggaaggaggagcatcacgccgctctgagcagactgaaggaggtcagacaggaggagcagcgactgcaggacgccgtcaaggagctgtggaagcagcaggaggtgctgttgagtgagaggaggtcttcagtctctgctgtgaacgaggaggagcagaaactcctcacgctgcagtctgagctcaacacccacagagcagagctgaaacgggtccttcaggagctgcttgcagagcagcaggctttggaggaagtgaaaaccaaacgcacccagactctccagcggctccacaagaagaaagacgagctggacagaaccaaggacgagctggacagaaccaaggacgagctggacagaaccaaggacgagctgcatggaaccaaggacgagctggacagaaccaaggacgagctgcacggaaccaaggacgagctgcacagaaccaaggacgagctgcacagaaccaaggacgagctgcacagaaccaaggacgagctgcacggaaccaaggacgagctgcacggaaccaaggacgagctggacggaaccaaggacgagctgcacagaaccaaggacgagctgctcatgaagcaagaagagctggacaggaagcgggatttgttggacgggatacaggacgaggtggagaagaagaaggacgagctggtaaacaagcagcacaagacggaccagaagagacacaaactggacaaaatgcaggatgaagtggagcggaagagggaggagctggctgcgctgcaacaggaagttgattcccacagaaaagagtcagagtcacgtctcaaaaatactaaacagcagcgaacagaactgcaggagctgcaggaggagctgagcaggaggagggaggagagcagcagcctgcaggagcagtgtaaacacctggaggccagacggaggcacgccgacaggtgtctgtcagcgacggaggcggagcttgctaaacagagggaggagcatagccgcgcccagctccttaaacaggaagtgatccgagatacagcagccgctcaggagcagcttaatgagaactcggagctgctgtcgctgctcagtgaacagctggagcagaagaagaagcagctgcagactgttgaacaggagctgaacgagtccagtcagcagcagcagagagcagaacacatccaacacaaacaggtgtctgctgggtcggacgatgttaaagctgcagcgtgtcagctggaggacagggggcgccgtctgaaccaccagcagctgcagctcaaccagctcagtgagcagctgtggcagagagagaagcagctgctttgtgaggaggaggggcttatccacacgggggcggggctacagcgggaaggggaggagcttattcagacagaggaagggctccagaagaaagagaaggaggaggacagcagggaggtgttaaaggaggaggacgagtctttctatctgtctacagctggtctgagatcagctttcaacactgaggacgagaggtggaaggttgagttgcaaagagaaaaactgagacaacaagaagaccgactaaaggctcgtcttcgctgcagtttgtggaaccagcaggagaatctggaggtgagacgactggagacggaggagagtttactgggactgaaacacagactggaccagctggactcactgctcacacacactgaaacacacactccctaacacacacacacacacacacacacaacaaacattcagtaacctgtctgtctgactttaacagagaaacatatgcagctcaaactgacgtaactttatgaatctagagtcacgcagcagccgattaaactcacacaatgttttcaaaacctcacacatccttcttctcctgttcacacacgactaaacatgaagagatactgtcgtccttctgaagttcagctgcagataatacgagtcctcatcagtctgagttacactaatcaagtctgtttagttccaaaaaaaataaatctcttcacagcggattatgcaacaggaggaaagaacttgtgcacagtctcacttattgtttactagttcagtctgtccgaccttcatcagctgcttcattaaaagatacgaatatgaacccaaactgcaataaaccatgaagatgatccttta
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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