GGRNA ver.2 Home | Help | Advanced search    Previous release (v1)

2024-11-01 10:33:13, GGRNA.v2 : RefSeq release 226 (Sep, 2024)

LOCUS       XM_067574652            6513 bp    mRNA    linear   VRT 22-AUG-2024
DEFINITION  PREDICTED: Thunnus thynnus centriolin (cntrl), transcript variant
            X1, mRNA.
ACCESSION   XM_067574652
VERSION     XM_067574652.1
DBLINK      BioProject: PRJNA1130912
KEYWORDS    RefSeq.
SOURCE      Thunnus thynnus (Atlantic bluefin tuna)
  ORGANISM  Thunnus thynnus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Actinopterygii; Neopterygii; Teleostei; Neoteleostei;
            Acanthomorphata; Pelagiaria; Scombriformes; Scombridae; Thunnus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_089518) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_963924715.1-RS_2024_07
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.3
            Annotation Method           :: Gnomon; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 07/03/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6513
                     /organism="Thunnus thynnus"
                     /mol_type="mRNA"
                     /db_xref="taxon:8237"
                     /chromosome="2"
     gene            1..6513
                     /gene="cntrl"
                     /note="centriolin; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 1 Protein"
                     /db_xref="GeneID:137170963"
     CDS             346..6069
                     /gene="cntrl"
                     /codon_start=1
                     /product="centriolin isoform X1"
                     /protein_id="XP_067430753.1"
                     /db_xref="GeneID:137170963"
                     /translation="
MEEQREAGGGADSQENRGGIRYITEELLLKLSGSSSLVLVRSLNLSSSAGEKHIKFIENLHSCQRLQVLNLNHNLIQRMERLNALTQLRELQLAHNNIQRIEGLELMSSLQHLNLSYNRIDHVPVWMGRKLRSLHTLHLQHNLITSLSEVSRLRSLSSLSELSLSGNPASSLPHSRLFLLYHLRTLDRLDNQPITPEERGHAHQRFHAEELERLQHQVDSSQSQLSRLQRERQAAVTRLHQQEETNRTLTAQTETQRRTHTLLEQELHTKNQLLERTTAELTRAFHKLYELEQELTFYKIDAKLSPLPIIQEVDAVDSVAESPYIGKARHIRNTITISSSSLQTQEDSDVHTDMGSSRPLLEDCRTQQSTAEAGLQMTCQTQQQLEADLTAPEETKTHRQEVLCCLLGKLSVLDELRDEAEETSRQMDRQTEESRRTQRETEELETQLLTLDITDPQHARVTSRLASVRQLLDRMSRKQSELEGRLDDMLTRIAMETQEIKELEQQLTDGQILANEALQRDLEGIISGLQEYLRSLREQARRAQQQVHSLQDENQSLQLHLQDAQRHCRQLQDTARTHTQNMSLQQEELSVLQMEAQALRDRQVESSRQQVELEAELQQLREELSRQLTLGKLERDALQAAVDKEKQTREIRESQLQSTIDTLQDDKSSLQQIVHKLQAQLDQTEDQLHQSRTQYKETRSQLEQLSAALLDEDRTRAEDKSSPEDTLSSSVEQLYRTVQQTRTSKEQVHNQNQQQIERLQAQLAQDQEHIAQLEAQLAWDQDLVTCGVEQDQELQRLRDKLQRSQSTNRHIQHKLEAELQQSRLQLQDVQQERDALLLQLRSQSDGHQKSLARLNRKLRQLSRFMCDSDQLTSEQLRSTSEQLRALNCTVELLHTQKTVDEHDDSSHQTEHTHTLQDEHTHTLQDEHTHTLQDEHTHTLQDEHTHTLQDEHTHAVEELRAELAEAQQHASRLRQQLDQVRTRNRTRTRTRTRTRSRTRTRSRSRTRSRIRDGGQWCFIPPGHSAPSLGSQGTQDSGLGLQYLSSPERAQQQHRPPTGGGYWVYIPPAHTDSDTGAEWRDSGGGSDTDRSSRGGTPLPPPAPAAGVSEGLSDAQTPLAGPAWLLCGSPAAVVYSPPAGGAALHCNIPEHTHREGMCVCECERLREAERLEEEKKKLRLETKQLRHTLRRHRSVKLVCDEVDCVEKTLLKRRAELRQADRLLLEAQSCIHTTRDQARSAQREADTLQHRAQDSATCLLEATQHVRELQEELEELRRRRQLEEQTLREVEEVLRSRDQKFQQLSTKTHSAADRLALVLSDCQEAQRRLDSVNSQVEQQEQRLLQRKEEHHAALSRLKEVRQEEQRLQDAVKELWKQQEVLLSERRSSVSAVNEEEQKLLTLQSELNTHRAELKRVLQELLAEQQALEEVKTKRTQTLQRLHKKKDELDRTKDELDRTKDELDRTKDELHGTKDELDRTKDELHGTKDELHRTKDELHRTKDELHRTKDELHGTKDELHGTKDELDGTKDELHRTKDELLMKQEELDRKRDLLDGIQDEVEKKKDELVNKQHKTDQKRHKLDKMQDEVERKREELAALQQEVDSHRKESESRLKNTKQQRTELQELQEELSRRREESSSLQEQCKHLEARRRHADRCLSATEAELAKQREEHSRAQLLKQEVIRDTAAAQEQLNENSELLSLLSEQLEQKKKQLQTVEQELNESSQQQQRAEHIQHKQVSAGSDDVKAAACQLEDRGRRLNHQQLQLNQLSEQLWQREKQLLCEEEGLIHTGAGLQREGEELIQTEEGLQKKEKEEDSREVLKEEDESFYLSTAGLRSAFNTEDERWKVELQREKLRQQEDRLKARLRCSLWNQQENLEVRRLETEESLLGLKHRLDQLDSLLTHTETHTP"
     polyA_site      6513
                     /gene="cntrl"
                     /experiment="COORDINATES: polyA evidence [ECO:0006239]"
ORIGIN      
tcattgtttcggtttctctgtgctgctgttcaataaacgtttgtcgtgttttcaagtgacaaacgtgttttttgtttacttgacgacagctaacgttacttaaaccgctttgtatccgcgggtttccatggagacggaggattaactaacccagccggccgccgtcagcgcaccgggacgagcagcctgtcacgctgtcacatctgtcacgctgtcacatctgtcacgctgtcacatctgtccagctgtcacatctgtcacgctgtcacatctgtcacgctgtcacatctgtcacgctgtcacatctgtccagctgtcacatctgtccagctgtctggtccagagatggaggagcagagggaggcgggaggaggtgcagactctcaggagaacagaggaggtatcaggtatataacagaggagttgctgttgaagctctctggttcttcgtctctggttctggttcgttctctgaatctgtcgtcatcagctggagaaaaacacatcaagtttatagagaacctgcacagctgtcagcgtctgcaggttttaaacttgaaccacaacctgatccagaggatggagagactgaacgctctgacacagctgagagagctgcagctggcccacaacaacatccagaggattgagggactggagctcatgtccagtctgcagcacctgaacttgtcctacaaccggatcgaccacgtccccgtgtggatggggaggaaactacgctcactgcacacgcttcacctgcaacacaacctcatcacatcactgtctgaggtgtccagactgcgttctctgagcagcctatcagagctgtctttgtcaggaaaccccgcctcttcgctaccacactcccgcctcttcctgctgtaccacctgaggactctggacaggctggacaaccagccaatcacaccagaggaaagaggacacgcccatcagcgcttccacgccgaggagctggagcgtctgcagcaccaggtggacagcagccaatcacagctgagcaggctgcagagggagcggcaggctgcagtgactcgactccaccagcaggaggagacgaaccgaacgctgacggctcagacagaaacacaacgacgcacacacacactgctggagcaggaactgcacaccaagaaccagctgttggagcggacgacggccgagttgactcgagcctttcacaaactgtacgagctggagcaggagctgacgttctacaagatagacgccaagctcagccctctgcccatcatacaggaagtcgacgctgtggactctgtggctgagagtccgtacataggcaaggctcgacacatcaggaacaccatcaccatctcctcctcctccctgcagacccaggaggactcagacgttcacactgacatggggtcatcacgccccctgcttgaagactgcagaacacagcagagtacagctgaggctggcctgcagatgacctgtcagactcaacagcagctggaggcagatcttacagcacctgaggaaaccaaaacacacagacaggaggtgctgtgttgtctcctcggtaaactgtccgtcctggacgagttgagagacgaagcagaggagacgagcagacagatggacagacagacggaggagagcaggaggacccagagagagacagaagagctggagacacaactactgacactggacatcacagacccacaacatgcccgtgtgacgtcccggttggccagtgtgagacagctgttggacaggatgagcaggaagcagagcgagctggagggtcgcctcgacgacatgctgacacgcatcgccatggagacacaggagatcaaagagctggagcaacagctgaccgacggtcagattttggctaatgaagctcttcagagggatttggagggaatcatttctggacttcaggagtatctgagatccctcagagagcaggctcgtcgagctcagcagcaggttcacagtctgcaggatgaaaaccagagtctgcagctccacctgcaggacgctcagagacactgcagacagctgcaggacacggccaggacacacacacagaacatgtccctccagcaggaggagctgtctgtgttgcagatggaggcccaggctctgagagacagacaggtggagagcagcagacagcaggtggagctggaggcggagctccagcagctgagggaggagctaagccggcagctcacactgggaaagttggagcgtgatgcactgcaggcagctgtagacaaagagaaacagaccagagagatcagagagtctcagctacagtcaaccatcgacacactgcaggatgacaaatcatctctccagcagattgttcacaaacttcaggctcaactggaccaaaccgaagaccagttacaccagagcagaacccagtataaagagaccaggagccagctggagcagctgtcagctgccttgttggacgaggacagaaccagagcagaggacaagtccagtcctgaggacacgttgtccagcagtgtggaacagctctacaggaccgtccagcagaccaggactagcaaggagcaggtccacaaccaaaaccagcagcagatagaaagactgcaggcccagctggcccaggaccaggagcacatagcccagctggaagcccagctggcctgggaccaggacctggtgacctgcggcgtggagcaggatcaggagctgcagagactccgagacaaactgcagagatctcagagcacgaacagacacatccaacacaaactggaggcggagctacagcaaagccgtctgcagcttcaggacgtccagcaagagagagacgctctgctcctgcagctgcgttcacagagcgacggtcaccagaagagcctcgcacgtctgaacaggaaactacggcaactcagcaggttcatgtgcgactctgatcagctgacaagcgaacaactgagatcaacctccgaacagctgagagctctgaactgcactgtggagctgctgcacacacagaaaactgtggatgagcacgacgacagctctcaccaaactgaacatacacacactctgcaggacgaacacacacacactctgcaggacgaacatacacacactctgcaggatgaacacacacacactctgcaggatgaacacacacacactctgcaggacgaacacacacacgcagtggaggagctgagagcagagctggctgaagctcagcaacatgcaagcagactgagacagcagctggaccaggtcaggaccaggaacaggaccaggaccaggaccaggaccaggaccaggagcaggaccaggaccaggagcaggagcaggaccaggagcaggatcagagatggaggccagtggtgcttcatccctcctggacacagtgctcccagtctgggctctcaggggactcaggactctggtttggggctgcagtacctcagttctcctgagagggcacaacagcagcacagacctcctacaggaggcgggtactgggtctacatccccccggcacacaccgactctgacacaggagcagagtggagggacagcggaggaggcagtgatactgaccgcagctccagaggagggactcctcttcctcctcctgccccagctgcaggtgtctctgaggggctctctgacgctcagactcccctggctggacccgcctggctgctctgtggttcacctgcagctgttgtctacagtcctcctgcggggggcgccgcactgcactgtaacatccctgaacacacacacagggaaggcatgtgtgtgtgtgaatgtgagaggctcagagaggcagagcgactggaggaagagaagaagaaactacgactggaaaccaaacaactacgacacacactgagacgacacaggagtgtgaagctggtgtgtgatgaggtggattgtgtagagaaaactctgctgaagagacgagctgaactccgtcaggctgacagactgctgctggaggctcagagctgcatacacaccaccagagaccaggccagatcagcccagcgggaggcggacaccttgcagcacagagctcaggacagcgccacctgtctgctggaagccacgcagcacgtcagagagctgcaggaggagctggaggagctgaggaggaggaggcagctggaggagcagactctgagggaggtggaggaggtgctgaggagcagagatcagaagttccaacaactcagcacgaaaacacactcggctgcagacagactggctctcgtgctgtcggactgtcaggaggctcagaggcgtctggactcggtgaacagtcaggtggagcagcaggagcagaggctgcttcagaggaaggaggagcatcacgccgctctgagcagactgaaggaggtcagacaggaggagcagcgactgcaggacgccgtcaaggagctgtggaagcagcaggaggtgctgttgagtgagaggaggtcttcagtctctgctgtgaacgaggaggagcagaaactcctcacgctgcagtctgagctcaacacccacagagcagagctgaaacgggtccttcaggagctgcttgcagagcagcaggctttggaggaagtgaaaaccaaacgcacccagactctccagcggctccacaagaagaaagacgagctggacagaaccaaggacgagctggacagaaccaaggacgagctggacagaaccaaggacgagctgcatggaaccaaggacgagctggacagaaccaaggacgagctgcacggaaccaaggacgagctgcacagaaccaaggacgagctgcacagaaccaaggacgagctgcacagaaccaaggacgagctgcacggaaccaaggacgagctgcacggaaccaaggacgagctggacggaaccaaggacgagctgcacagaaccaaggacgagctgctcatgaagcaagaagagctggacaggaagcgggatttgttggacgggatacaggacgaggtggagaagaagaaggacgagctggtaaacaagcagcacaagacggaccagaagagacacaaactggacaaaatgcaggatgaagtggagcggaagagggaggagctggctgcgctgcaacaggaagttgattcccacagaaaagagtcagagtcacgtctcaaaaatactaaacagcagcgaacagaactgcaggagctgcaggaggagctgagcaggaggagggaggagagcagcagcctgcaggagcagtgtaaacacctggaggccagacggaggcacgccgacaggtgtctgtcagcgacggaggcggagcttgctaaacagagggaggagcatagccgcgcccagctccttaaacaggaagtgatccgagatacagcagccgctcaggagcagcttaatgagaactcggagctgctgtcgctgctcagtgaacagctggagcagaagaagaagcagctgcagactgttgaacaggagctgaacgagtccagtcagcagcagcagagagcagaacacatccaacacaaacaggtgtctgctgggtcggacgatgttaaagctgcagcgtgtcagctggaggacagggggcgccgtctgaaccaccagcagctgcagctcaaccagctcagtgagcagctgtggcagagagagaagcagctgctttgtgaggaggaggggcttatccacacgggggcggggctacagcgggaaggggaggagcttattcagacagaggaagggctccagaagaaagagaaggaggaggacagcagggaggtgttaaaggaggaggacgagtctttctatctgtctacagctggtctgagatcagctttcaacactgaggacgagaggtggaaggttgagttgcaaagagaaaaactgagacaacaagaagaccgactaaaggctcgtcttcgctgcagtttgtggaaccagcaggagaatctggaggtgagacgactggagacggaggagagtttactgggactgaaacacagactggaccagctggactcactgctcacacacactgaaacacacactccctaacacacacacacacacacacacacaacaaacattcagtaacctgtctgtctgactttaacagagaaacatatgcagctcaaactgacgtaactttatgaatctagagtcacgcagcagccgattaaactcacacaatgttttcaaaacctcacacatccttcttctcctgttcacacacgactaaacatgaagagatactgtcgtccttctgaagttcagctgcagataatacgagtcctcatcagtctgagttacactaatcaagtctgtttagttccaaaaaaaataaatctcttcacagcggattatgcaacaggaggaaagaacttgtgcacagtctcacttattgtttactagttcagtctgtccgaccttcatcagctgcttcattaaaagatacgaatatgaacccaaactgcaataaaccatgaagatgatccttta
//

by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).

If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]