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Previous release (v1)
2025-07-03 16:00:03, GGRNA.v2 : RefSeq release 229 (Mar, 2025)
LOCUS XM_066671098 4567 bp mRNA linear VRT 22-JUL-2024
DEFINITION PREDICTED: Hoplias malabaricus neural cell adhesion molecule
L1-like (LOC136696580), mRNA.
ACCESSION XM_066671098
VERSION XM_066671098.1
DBLINK BioProject: PRJNA1136869
KEYWORDS RefSeq.
SOURCE Hoplias malabaricus (trahira)
ORGANISM Hoplias malabaricus
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Actinopterygii; Neopterygii; Teleostei; Ostariophysi;
Characiformes; Characoidei; Erythrinidae; Hoplias.
COMMENT MODEL REFSEQ: This record is predicted by automated computational
analysis. This record is derived from a genomic sequence
(NC_089804) annotated using gene prediction method: Gnomon.
Also see:
Documentation of NCBI's Annotation Process
##Genome-Annotation-Data-START##
Annotation Provider :: NCBI RefSeq
Annotation Status :: Full annotation
Annotation Name :: GCF_029633855.1-RS_2024_07
Annotation Pipeline :: NCBI eukaryotic genome annotation
pipeline
Annotation Software Version :: 10.3
Annotation Method :: Gnomon; cmsearch; tRNAscan-SE
Features Annotated :: Gene; mRNA; CDS; ncRNA
Annotation Date :: 07/19/2024
##Genome-Annotation-Data-END##
FEATURES Location/Qualifiers
source 1..4567
/organism="Hoplias malabaricus"
/mol_type="mRNA"
/isolate="fHopMal1"
/db_xref="taxon:27720"
/chromosome="5"
/sex="male"
/tissue_type="blood"
/dev_stage="adult"
/geo_loc_name="Brazil: Represa do Rio Monjolinho - Sao
Carlos, State of Sao Paulo"
/lat_lon="21.985889 S 47.880722 W"
/collection_date="2021-04-21"
/collected_by="Marcelo de Bello Cioffi"
gene 1..4567
/gene="LOC136696580"
/note="neural cell adhesion molecule L1-like; Derived by
automated computational analysis using gene prediction
method: Gnomon."
/db_xref="GeneID:136696580"
CDS 281..3181
/gene="LOC136696580"
/codon_start=1
/product="neural cell adhesion molecule L1-like"
/protein_id="XP_066527195.1"
/db_xref="GeneID:136696580"
/translation="
MPKVKCQRATARGQPCREFCLQLLLSTYLLLLSLGQSQGAINIPKDYVIDDLKQPPVITFQTESYTVFYPFEVMLKCEAMGNPAPSYRWVKDGEIFREESFSSDPITANEDEDLKSYLGKYRCYASNELGTAMSDVIELITEPLPSLPREKRVRKNVKEGETVVLHCNVPETSVAPSIFWMDKKLQFISLSERVTAGLDGNLYFANTLVEDSRDDYNCHAQHIQTRMIIAMERISLTVYPSDQDLRQRPPQLHRLPGTHSHYLALRGQSLTLECIPHGLPTPTVVWEKKDGSLSATSAVSERFNRWLTFYSISENDDGEYSCTASNTLGKVTHSYAITVQAAPYWSKQPQSHRYAPGETVRLDCQAEGIPTPVITWRMNGVPIQEMNEEPRRRVSRGTLILNDVRYDDTAVYQCEASNQHETILINIYIHIIYLSPQILTSDKLLYNITEGDSASLDCVSFGSPRPQISWESENMETVLSDPRVSQLTNGTLRITDVRSEDAGAYSCSVKHFNLSIVAYLAVLKINHSEHPLLQFTSDSSPPSESNTTPAADLSPQILTSDKLLYNITEGDSASLDCVSFGSPRPQISWESENMETVLSDPRVSQLTNGTLRITDVRSEDAGAYSCSVKHFNLSIVAYLAVLKINHSEHPLLQFTSDSSPPSESNTTPAADLSPQILTSDKLLYNITEGDSASLDCVSFGSPRPQISWESENMETVLSDPRVSQLTNGTLRITDVRSEDAGEYSCSVKHFNLSIVAYLAVLKINHSEHPLLQFTSDSSPPSESNTTPAADLSPQILTSDKLLYNITEGDSASLDCVSFGSPWPQISWESENMETVLSDPRVSQLTNGTLRITDVRSEDAGAYSCSVKHFNLSIVAYLAVLKINHSEHPLLQFTSDSSPPSESNTTPAAGFSQGWFIGLVIASGLFILLIFCFIKCRKGGKHSAVQKRKDRADSLIKDETLAESTSV"
misc_feature 446..700
/gene="LOC136696580"
/note="Immunoglobulin domain; Region: Ig; cl11960"
/db_xref="CDD:472250"
misc_feature 497..511
/gene="LOC136696580"
/note="Ig strand B [structural motif]; Region: Ig strand
B"
/db_xref="CDD:409353"
misc_feature 536..550
/gene="LOC136696580"
/note="Ig strand C [structural motif]; Region: Ig strand
C"
/db_xref="CDD:409353"
misc_feature 638..655
/gene="LOC136696580"
/note="Ig strand F [structural motif]; Region: Ig strand
F"
/db_xref="CDD:409353"
misc_feature 680..691
/gene="LOC136696580"
/note="Ig strand G [structural motif]; Region: Ig strand
G"
/db_xref="CDD:409353"
misc_feature 749..994
/gene="LOC136696580"
/note="Immunoglobulin domain; Region: Ig; cl11960"
/db_xref="CDD:472250"
misc_feature 767..781
/gene="LOC136696580"
/note="Ig strand B [structural motif]; Region: Ig strand
B"
/db_xref="CDD:409353"
misc_feature 809..823
/gene="LOC136696580"
/note="Ig strand C [structural motif]; Region: Ig strand
C"
/db_xref="CDD:409353"
misc_feature 878..892
/gene="LOC136696580"
/note="Ig strand E [structural motif]; Region: Ig strand
E"
/db_xref="CDD:409353"
misc_feature 923..940
/gene="LOC136696580"
/note="Ig strand F [structural motif]; Region: Ig strand
F"
/db_xref="CDD:409353"
misc_feature 971..982
/gene="LOC136696580"
/note="Ig strand G [structural motif]; Region: Ig strand
G"
/db_xref="CDD:409353"
misc_feature 1058..1300
/gene="LOC136696580"
/note="Immunoglobulin domain; Region: Ig; cl11960"
/db_xref="CDD:472250"
misc_feature 1088..1102
/gene="LOC136696580"
/note="Ig strand B [structural motif]; Region: Ig strand
B"
/db_xref="CDD:409353"
misc_feature 1127..1141
/gene="LOC136696580"
/note="Ig strand C [structural motif]; Region: Ig strand
C"
/db_xref="CDD:409353"
misc_feature 1193..1207
/gene="LOC136696580"
/note="Ig strand E [structural motif]; Region: Ig strand
E"
/db_xref="CDD:409353"
misc_feature 1235..1252
/gene="LOC136696580"
/note="Ig strand F [structural motif]; Region: Ig strand
F"
/db_xref="CDD:409353"
misc_feature 1274..1285
/gene="LOC136696580"
/note="Ig strand G [structural motif]; Region: Ig strand
G"
/db_xref="CDD:409353"
misc_feature 1310..1540
/gene="LOC136696580"
/note="Immunoglobulin domain; Region: Ig; cl11960"
/db_xref="CDD:472250"
misc_feature 1358..1372
/gene="LOC136696580"
/note="Ig strand B [structural motif]; Region: Ig strand
B"
/db_xref="CDD:409353"
misc_feature 1397..1411
/gene="LOC136696580"
/note="Ig strand C [structural motif]; Region: Ig strand
C"
/db_xref="CDD:409353"
misc_feature 1469..1483
/gene="LOC136696580"
/note="Ig strand E [structural motif]; Region: Ig strand
E"
/db_xref="CDD:409353"
misc_feature 1511..1528
/gene="LOC136696580"
/note="Ig strand F [structural motif]; Region: Ig strand
F"
/db_xref="CDD:409353"
misc_feature 1592..1855
/gene="LOC136696580"
/note="Immunoglobulin domain; Region: Ig; cl11960"
/db_xref="CDD:472250"
misc_feature 1640..1654
/gene="LOC136696580"
/note="Ig strand B [structural motif]; Region: Ig strand
B"
/db_xref="CDD:409353"
misc_feature 1679..1693
/gene="LOC136696580"
/note="Ig strand C [structural motif]; Region: Ig strand
C"
/db_xref="CDD:409353"
misc_feature 1748..1762
/gene="LOC136696580"
/note="Ig strand E [structural motif]; Region: Ig strand
E"
/db_xref="CDD:409353"
misc_feature 1790..1810
/gene="LOC136696580"
/note="Ig strand F [structural motif]; Region: Ig strand
F"
/db_xref="CDD:409353"
misc_feature 1832..1843
/gene="LOC136696580"
/note="Ig strand G [structural motif]; Region: Ig strand
G"
/db_xref="CDD:409353"
misc_feature 1949..2212
/gene="LOC136696580"
/note="Immunoglobulin domain; Region: Ig; cl11960"
/db_xref="CDD:472250"
misc_feature 1997..2011
/gene="LOC136696580"
/note="Ig strand B [structural motif]; Region: Ig strand
B"
/db_xref="CDD:409353"
misc_feature 2036..2050
/gene="LOC136696580"
/note="Ig strand C [structural motif]; Region: Ig strand
C"
/db_xref="CDD:409353"
misc_feature 2105..2119
/gene="LOC136696580"
/note="Ig strand E [structural motif]; Region: Ig strand
E"
/db_xref="CDD:409353"
misc_feature 2147..2167
/gene="LOC136696580"
/note="Ig strand F [structural motif]; Region: Ig strand
F"
/db_xref="CDD:409353"
misc_feature 2189..2200
/gene="LOC136696580"
/note="Ig strand G [structural motif]; Region: Ig strand
G"
/db_xref="CDD:409353"
misc_feature 2306..2569
/gene="LOC136696580"
/note="Immunoglobulin domain; Region: Ig; cl11960"
/db_xref="CDD:472250"
misc_feature 2354..2368
/gene="LOC136696580"
/note="Ig strand B [structural motif]; Region: Ig strand
B"
/db_xref="CDD:409353"
misc_feature 2393..2407
/gene="LOC136696580"
/note="Ig strand C [structural motif]; Region: Ig strand
C"
/db_xref="CDD:409353"
misc_feature 2462..2476
/gene="LOC136696580"
/note="Ig strand E [structural motif]; Region: Ig strand
E"
/db_xref="CDD:409353"
misc_feature 2504..2524
/gene="LOC136696580"
/note="Ig strand F [structural motif]; Region: Ig strand
F"
/db_xref="CDD:409353"
misc_feature 2546..2557
/gene="LOC136696580"
/note="Ig strand G [structural motif]; Region: Ig strand
G"
/db_xref="CDD:409353"
misc_feature 2663..2926
/gene="LOC136696580"
/note="Immunoglobulin domain; Region: Ig; cl11960"
/db_xref="CDD:472250"
misc_feature 2711..2725
/gene="LOC136696580"
/note="Ig strand B [structural motif]; Region: Ig strand
B"
/db_xref="CDD:409353"
misc_feature 2750..2764
/gene="LOC136696580"
/note="Ig strand C [structural motif]; Region: Ig strand
C"
/db_xref="CDD:409353"
misc_feature 2819..2833
/gene="LOC136696580"
/note="Ig strand E [structural motif]; Region: Ig strand
E"
/db_xref="CDD:409353"
misc_feature 2861..2881
/gene="LOC136696580"
/note="Ig strand F [structural motif]; Region: Ig strand
F"
/db_xref="CDD:409353"
misc_feature 2903..2914
/gene="LOC136696580"
/note="Ig strand G [structural motif]; Region: Ig strand
G"
/db_xref="CDD:409353"
ORIGIN
cgcttccttctcgttccatttcacctgctggctctggtttacaacagactctgtcaagcacttcacagaattcagagagaacgggcgtggtcctgagtatacgaccttcctccaagcacactctagaacacccgcacacacacgtaacacacatatttacacacacacactcgtccctgagcgcagtagtgagtgtgtgcctgtgtgtgtctgtatgagtgtgtgtgtttgaggtgtgtgtgagcgtggatgagaagagcgtttgatggaagagtgaaaaatgcctaaagtgaagtgtcagcgagcgaccgccagggggcagccctgtagagaattctgtctccagctgctgctgtccacgtatcttctgctgctctctctgggacaaagccaaggagccattaatattcccaaagactatgtaattgatgacctcaagcagcctccagtgatcacgtttcagacagagtcctacactgtcttttacccgttcgaggttatgctgaaatgtgaagccatgggaaaccccgcccccagctaccggtgggtgaaggatggagagatcttcagggaggagtccttcagctctgaccccatcactgcaaacgaagacgaggatctgaagtcttatctgggaaagtatcgctgttacgcctccaatgaactggggacggccatgtcagacgtcatcgagctcatcacagagcccttgccctctctgccgagagagaagagagtgaggaagaatgtgaaagaaggagaaactgtggtgctccactgtaacgtcccagaaacttcagtggcccccagcattttctggatggacaaaaagctgcagtttatcagtctgagtgagcgtgtcaccgctggtctggatggtaatctgtattttgctaacacgctagttgaagacagcagagacgattacaactgtcatgcccagcacattcagacgagaatgattatagcgatggagcgcatctctctgaccgtttacccatcggaccaggatttgaggcagagaccaccacaactccatcgtcttccaggaacacacagtcattacctcgctctccgaggacagagcctcacactggagtgtattccacatggactccccactcccacagtggtgtgggagaagaaggacggatccctctctgcgacttcagctgtcagtgagaggttcaatcgctggctcaccttctacagcatctcagaaaatgacgacggagaatattcctgcactgccagcaatactctgggaaaagtcacacactcctacgccatcacagtgcaggctgctccgtactggagtaaacagcctcaaagtcatcgctatgctcctggagaaacagtgagactggactgtcaggcagagggcatccctacacctgtcatcacctggagaatgaacggagttcctatacaagagatgaatgaagagccgaggaggcgtgtctccaggggaacgctgattctgaatgatgtgcgttacgatgacactgcagtgtatcagtgtgaagcctccaaccaacacgaaaccatcctcatcaacatctacatccacatcatctacctctctccacagatattaaccagtgataaactgttgtacaatataactgaaggagattctgcatctcttgactgcgtctcgttcggttccccgcggcctcagatcagctgggaaagcgagaatatggaaacagttctatctgacccacgagtgtcccagttaaccaacggcacgttaaggatcaccgatgtcagaagcgaggacgcaggggcatacagctgttctgttaaacacttcaatctctccatcgttgcttacctggcggtgctcaaaataaatcactctgagcaccctctgctgcagttcaccagtgactccagcccaccctctgagtctaacaccacacctgctgcagacctctctccacagatattaaccagtgataaactgttgtacaatataactgaaggagattctgcatctcttgactgcgtctcgttcggttccccgcggcctcagatcagctgggaaagcgagaatatggaaacagttctatctgacccacgagtgtcccagttaaccaacggcacgttaaggatcaccgatgtcagaagcgaggacgcaggggcatacagctgttctgttaaacacttcaatctctccatcgttgcttacctggcggtgctcaaaataaatcactctgagcaccctctgctgcagttcaccagtgactccagcccaccctctgagtctaacaccacacctgctgcagacctctctccacagatattaaccagtgataaactgttgtacaatataactgaaggagattctgcatctcttgactgcgtctcgttcggttccccacggcctcagatcagctgggaaagcgagaatatggaaacagttctatctgacccacgagtgtcccagttaaccaacggcacgttaaggatcaccgatgtcagaagcgaggacgcaggggaatacagctgttctgttaaacacttcaatctctccatcgttgcttacctggcggtgctcaaaataaatcactctgagcaccctctgctgcagttcaccagtgactccagcccaccctctgagtctaacaccacacctgctgcagacctctctccacagatattaaccagtgataaactgttgtacaatataactgaaggagattctgcatctcttgactgcgtctcgttcggttccccatggcctcagatcagctgggaaagcgagaatatggaaacagttctatctgacccacgagtgtcccagttaaccaacggcacgttaaggatcaccgatgtcagaagcgaggacgcaggggcatacagctgttctgttaaacacttcaatctctccatcgttgcttacctggcggtgctcaaaataaatcactctgagcaccctctgctgcagttcaccagtgactccagcccaccctctgagtctaacaccacacctgctgcagggttttctcaaggctggtttattggtttggtgattgcttcgggtctgttcatcctcctcatcttctgcttcatcaaatgcagaaaaggagggaaacactcagcggtacagaagcggaaggacagagcggactctctcattaaggacgagaccctcgcagagtccacatccgtctgataaagattaccccgatacaatcctcaaatgaaatgaaatgaatttaaatatatttttttcactggagcgattttgtatcactaataatctccatgtaaatgtcctctctctctctctctctctctctctctctctctctctctctcgtaggtcttctctctctctctctcacacacacacacacacacacacactgtcacacacctcacaccatatacacaaattatgcacatttctgacacaccacacacccaatatacaaaggcactcatgcttcacacatagccttagcaaccgccaagcataccatagcaacggcctagaaacacattagcaaccacctagcataccttaacaacatcctagcaaaagcttagcaaacaaactcctaacatcttagcattcacctacgatagcatagcaacagcctagcaacacattagtaaccacctaggaaaccaccaaaacaagctagcaacatatttgcaaccactcatgataccacagctacagcctagcaagaccttagcaaccacagaggaaaccaaggcaacaacctagcaaggtcttaagcttgatggattgttcccatagacacagcgtggtgtgtaccagagcacaggactgttctcatccctgcagcgactggtccatcaagagttggacgaatgtgtgtctgcactcagagaacaataaagatgtcttcaataacagtgtccttcctcacattttttttttttatgttgttgttgtcttccggccttgtgccacggcaaaacatatttgtgcttttattagtgcagtttttagagtttattgcaaaatatctgtaaaaacaatgaaaccactcgagtggactcctgacagcaagaagacagcggaccacgggtggatacctgagggccaagtttgtgtgttgcacagcattttctgggcagaccatcattctttgtaaattagatcagtaaaacatttttatccagcacagtattaacattttcagtgcaatcattttatctcaggtctagcagagtgagaagagcctgctatgtttaaactcaaccgagctttacaaatactttaatagcagagtataactactcagttctactgaattctgctcctgcacagagttaaattcttgtagttgaacgtacgtggtcctggttttggggatatgagctactcaacactccttactcagagctaattaaagcatgtttttatgttttagacaaatgccacatttgaacacttttccgttcacagtccattttactgatgtttccttcatcattttctttgttattctttgtaaattagtttagtgaatcatttaaatccagcacaatatcaacatttttaatctttttagtctttttatat
//
by
@meso_cacase at
DBCLS
This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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