2025-07-03 15:38:12, GGRNA.v2 : RefSeq release 229 (Mar, 2025)
LOCUS XM_064682903 4134 bp mRNA linear INV 25-APR-2024 DEFINITION PREDICTED: Drosophila montana copper-transporting ATPase 1 (ATP7), mRNA. ACCESSION XM_064682903 VERSION XM_064682903.1 DBLINK BioProject: PRJNA1101958 KEYWORDS RefSeq. SOURCE Drosophila montana ORGANISM Drosophila montana Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_026997398) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_035044405.1-RS_2024_04 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.2 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 04/22/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..4134 /organism="Drosophila montana" /mol_type="mRNA" /isolate="Dmon_TW-CO22-7" /isolation_source="single wild fly" /db_xref="taxon:40370" /chromosome="Unknown" /sex="male" /tissue_type="whole fly" /dev_stage="Adult fly" /geo_loc_name="USA: Flatiron Campground, CO" /collection_date="2022-07" gene 1..4134 /gene="ATP7" /note="copper-transporting ATPase 1; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins" /db_xref="GeneID:135428797" CDS 155..4060 /gene="ATP7" /codon_start=1 /product="copper-transporting ATPase 1" /protein_id="XP_064538973.1" /db_xref="GeneID:135428797" /translation="
MNDDQIANAKNAHATIEQLINRAPTPTPAALQPVAAATDAAADAVADATANMASVRLPIVGMTCQSCVRNIESHMGQQPGVIKARVQLSENAGYFDYVPSQMDAGRIANLIDEMGFECSYQPEISPASASAQLRILGMTCQSCVRNIEAHVSSKPGVHHIEVQLAEKSARVQYDPDQLTAASIAEIIDDMGFEASVANDLNATAPVSTPTPTSTPKSTPTPKRTATPRHSPGKQLSTGTTNGAATLVPVEQELLTKCFLHIRGMTCASCVAAIEKHCRKIYGLDSILVALLAAKAEVKYNANVLTAENIAKTITELGFPTELIDEPDNGEAEVELEISGMTCASCVNKIETHVLKLRGVTAASVTLLTKRGKFRYITDDTGPRSICEAIEALGFQAKLLSGRDKMAHNYLEHKEEIRKWRNAFLISLIFGGPCMVAMIYFMLEMSDKGHANMCCLVPGLSMENLVMFLLSTPVQFFGGYHFYVQSYRAIKHGTTNMDVLISMVTTISYVYSVAVVIAAVLMEQNSSPLTFFDTPPMLLIFISLGRWLEHIAKGKTSEALSKLLSLKAADALLVEISPDFDISSEKTISVDYVQRGDVLKVIPGAKVPVDGKVLYGHSSCDESLITGESMPVAKRKGAVVIGGSINRNGMLLVEATHTGENTTLAQIVRLVEEAQTSKAPIQQLADRIAGYFVPFVVAISSVTLIGWIIAGFVNPDLVPVAMEHKMHMDRNTIVISYAFKCALSVLAIACPCALGLATPTAVMVATGTGATNGVLVKGATALENAHKVKTVVFDKTGTITHGTPMTSRVTLFVPPQVCSLARALTIIGAAEQNSEHPIASAIVHFAKEMLNVQISFGKSSNFQSVPGCGIRATVSNYEQALRQACNAERIINYENLWRTHPHSEIAVDNGASIDQLQLQHKFVEQQQLLALDGALDLEQQLRQQQHPPQDQPPLIDGPEIHVLIGNREWMQRNAIEVPLEISDCMTREEHKGHTAVLCALNGQLVCMFAVADMVKPEAHLAVYTLKRMGIDVVLLTGDNKNTAASIAREVGIRTVYAEVLPSHKVAKIQRIQQRGVRVAMVGDGVNDSPALAQADVGITIAAGTDVAAEAADIVLMRNDLLDVVACLDLSRCTVRRIRYNFLFASMYNLLGIPLASGLFAPFGFTLQPWMASVAMAASSVSVVCSSLLLKMYRKPTAKTLRTAEYEAQLAAERARRYGSSETELDKLSLHRGLDDLPELMNGKRMAAFKRSNTSLISRIFSANTNGNGNGKHEEGLLQDANERTPRILQSRYLGDTTELQKL"
polyA_site 4134 /gene="ATP7" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN
ctcgcacactcgcacacacacacacacactcgcacacacacacgcgcgccactgataaattgtaaagcaacaataaacaagaaaaaataaaagtccaattagaccaacaaaacaaacaccaatacgaaacgagtcagtgaaatgcaaatttaaaatgaatgacgaccaaatcgcgaatgccaaaaatgcgcacgccacaatcgaacagctgattaatcgggcgccaacgccaacgccagcagcgctgcagcctgttgctgccgccaccgacgcagccgccgacgcagtcgccgacgccaccgcgaacatggccagcgtgcgtttacccattgtgggcatgacctgccagtcgtgcgtgcgcaacattgagtcccatatgggccagcagccaggcgtgatcaaggcgcgtgtccagctgtcggagaacgccggctactttgactacgtgcccagccagatggatgccggccgcattgccaacctgatcgatgagatgggcttcgagtgcagctatcagccggaaataagcccggccagcgctagcgcccaattgcgcatcctgggcatgacgtgccagtcgtgtgtgcgcaacattgaggctcatgtgtccagcaagccgggcgtccaccacatcgaggtgcagctggccgagaagagcgctcgcgtccagtacgatcccgatcagctgacggcggcgagcattgctgaaattatcgatgacatgggctttgaggcgagcgtggccaatgatctgaatgccacagcgcctgtgtccacgcccacgcccacgtccacacccaaatctacgcccacaccgaagcgaacggcaacgccgaggcattcacctggcaagcaactgtcgacaggcacaacaaacggtgctgccaccttggtgcccgtggagcaggagctgctcacgaaatgctttctccatatacggggcatgacctgcgccagctgtgtggcggccattgagaagcactgcagaaagatctatgggctggatagcatattggtggcattgctcgccgccaaggcggaggtcaagtacaatgcgaatgttctcaccgccgagaatattgccaaaacaataaccgagctcggctttcccacggagctcatcgatgagcccgacaacggtgaggccgaggtggagctggaaatatcgggcatgacctgtgcctcctgtgtcaacaagatcgagactcacgtgctcaagctgcgcggcgttacggccgcttcggtcacgctgctaacaaaacgcggcaaattccgatacatcaccgatgacacgggaccccggagcatctgcgaggccatcgaggcgctcggcttccaggcgaagctgctcagtggccgggacaagatggcgcacaattatctggagcacaaggaggagatacgaaagtggcgaaacgcgttcctcatctcgctgatctttggcgggccgtgcatggtcgccatgatctactttatgctggagatgagcgacaaggggcacgcgaacatgtgctgcctggtgccgggcctctccatggagaacttggtcatgtttctgctctcgacgccggtgcaattctttggcggctatcacttctatgtgcaatcgtatcgcgccatcaagcacggcaccaccaacatggatgtgctcatctcaatggtgacgaccatctcctatgtgtactccgtggcggtggtcattgccgccgtgctcatggaacagaatagctcgccgctcacatttttcgatacgccgccgatgctgctgatcttcatctcgctgggccgctggctggagcacatagccaagggtaagacgtcggaggcgctatccaagctgttgtccctgaaggcagccgatgcgctgcttgtggagatctcgccggactttgacatttccagcgagaagacgatctctgtcgattatgtgcagcgcggcgatgtgctcaaggttatacccggcgccaaggtgcccgtcgacggcaaggtgctctatggccattccagctgtgatgagtccctcatcaccggcgaatcgatgccggtggccaagcggaagggtgccgttgtcatcggtggctcaatcaatcggaacggtatgctgctcgtggaggccacgcataccggcgagaacacaacgctggcccagattgtccggctcgtcgaggaggcacaaacatcgaaggcgcccatccaacagctggcggatcgcattgccggctactttgtgcccttcgtggtggccatatcgagcgttacgctcattggctggatcattgccggctttgtcaatcccgatctggtgccagtggccatggagcacaagatgcatatggatcgcaatacaattgtgatcagttatgcgttcaagtgtgcgctcagcgttctggcgattgcctgtccctgtgccttgggcctggccacgcccaccgctgtcatggttgccaccggcaccggcgccacaaatggcgtcctggtgaaaggtgccaccgccctggaaaatgcccacaaggtcaagactgtggtcttcgacaagacgggcaccatcacacatggcacacccatgaccagccgggtgacgctctttgtgccgccccaggtatgcagtttggcccgtgccttgaccatcattggcgccgccgagcagaacagcgaacatcccattgcctcggcgattgtgcacttcgcaaaggagatgctaaacgtgcagattagctttggcaagagctcgaactttcagtcggtgcccggatgcggaatacgcgccaccgtctccaactatgagcaggcgctgcggcaggcctgcaatgcggagcggatcatcaactatgagaatctgtggcgcacccatccgcacagcgagatcgctgtggacaacggtgccagcattgaccagctccagctgcagcacaagttcgtggaacagcagcagctgctggctctggacggcgcactcgatctggagcagcagctgaggcagcaacagcacccgccacaggatcaaccgcccctgatcgacggacccgaaatccatgttctgatcggcaatcgcgaatggatgcagcgcaatgccatcgaggtgccgctggagatcagcgattgcatgacccgcgaggagcacaagggacacaccgctgtcctctgcgccctgaacggtcagctggtctgcatgttcgccgtcgccgacatggtcaagccggaggcccatctggccgtctatacgctcaagcgcatgggcatcgatgtggttctcctgaccggcgacaacaagaacacagcggcgagcatagcccgtgaggtgggcatacgcaccgtctatgcggaggtgctgccttcacacaaggtggcaaaaatccagcggatacagcagcgcggcgtgcgggtcgccatggtgggcgacggcgtcaacgacagccccgccttggcgcaggccgatgtgggcataacgattgccgccggaacagatgtggccgccgaggcggcggacattgtgctgatgcgcaacgatctgttggatgtggtcgcctgcctggatctgtcccgctgcacggtgcgtcgcatacgctacaatttcctgttcgccagcatgtacaatctgttgggtataccgcttgccagcggtctgtttgccccattcggtttcacactgcagccctggatggcatcggtcgccatggcggccagttcggttagcgtcgtctgctcctccctgctgctcaagatgtatcgcaagccgacggcgaaaacgttgcgcaccgccgaatacgaggctcagctggcggcggagcgtgccagacgctatggctcctccgaaacggagctggacaaattgtcgctgcatcgcggcctcgacgatctgcccgagctgatgaatggcaaacggatggccgcatttaagcgctccaatacgtcgctcatctcgcgcatctttagcgccaataccaatggcaatggcaacggcaagcacgaggagggcctgctccaggatgccaacgagcggacgccaaggattctgcagtcccgctatctgggcgacaccaccgagctgcaaaagctctgaagcgaccacaatgaaagagcactgcatatatgtccatatataaatataacatatagaaatccttaactataaat
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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