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2025-07-03 15:38:12, GGRNA.v2 : RefSeq release 229 (Mar, 2025)

LOCUS       XM_064682903            4134 bp    mRNA    linear   INV 25-APR-2024
DEFINITION  PREDICTED: Drosophila montana copper-transporting ATPase 1 (ATP7),
            mRNA.
ACCESSION   XM_064682903
VERSION     XM_064682903.1
DBLINK      BioProject: PRJNA1101958
KEYWORDS    RefSeq.
SOURCE      Drosophila montana
  ORGANISM  Drosophila montana
            Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
            Pterygota; Neoptera; Endopterygota; Diptera; Brachycera;
            Muscomorpha; Ephydroidea; Drosophilidae; Drosophila.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026997398) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_035044405.1-RS_2024_04
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Gnomon; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 04/22/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4134
                     /organism="Drosophila montana"
                     /mol_type="mRNA"
                     /isolate="Dmon_TW-CO22-7"
                     /isolation_source="single wild fly"
                     /db_xref="taxon:40370"
                     /chromosome="Unknown"
                     /sex="male"
                     /tissue_type="whole fly"
                     /dev_stage="Adult fly"
                     /geo_loc_name="USA: Flatiron Campground, CO"
                     /collection_date="2022-07"
     gene            1..4134
                     /gene="ATP7"
                     /note="copper-transporting ATPase 1; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 3
                     Proteins"
                     /db_xref="GeneID:135428797"
     CDS             155..4060
                     /gene="ATP7"
                     /codon_start=1
                     /product="copper-transporting ATPase 1"
                     /protein_id="XP_064538973.1"
                     /db_xref="GeneID:135428797"
                     /translation="
MNDDQIANAKNAHATIEQLINRAPTPTPAALQPVAAATDAAADAVADATANMASVRLPIVGMTCQSCVRNIESHMGQQPGVIKARVQLSENAGYFDYVPSQMDAGRIANLIDEMGFECSYQPEISPASASAQLRILGMTCQSCVRNIEAHVSSKPGVHHIEVQLAEKSARVQYDPDQLTAASIAEIIDDMGFEASVANDLNATAPVSTPTPTSTPKSTPTPKRTATPRHSPGKQLSTGTTNGAATLVPVEQELLTKCFLHIRGMTCASCVAAIEKHCRKIYGLDSILVALLAAKAEVKYNANVLTAENIAKTITELGFPTELIDEPDNGEAEVELEISGMTCASCVNKIETHVLKLRGVTAASVTLLTKRGKFRYITDDTGPRSICEAIEALGFQAKLLSGRDKMAHNYLEHKEEIRKWRNAFLISLIFGGPCMVAMIYFMLEMSDKGHANMCCLVPGLSMENLVMFLLSTPVQFFGGYHFYVQSYRAIKHGTTNMDVLISMVTTISYVYSVAVVIAAVLMEQNSSPLTFFDTPPMLLIFISLGRWLEHIAKGKTSEALSKLLSLKAADALLVEISPDFDISSEKTISVDYVQRGDVLKVIPGAKVPVDGKVLYGHSSCDESLITGESMPVAKRKGAVVIGGSINRNGMLLVEATHTGENTTLAQIVRLVEEAQTSKAPIQQLADRIAGYFVPFVVAISSVTLIGWIIAGFVNPDLVPVAMEHKMHMDRNTIVISYAFKCALSVLAIACPCALGLATPTAVMVATGTGATNGVLVKGATALENAHKVKTVVFDKTGTITHGTPMTSRVTLFVPPQVCSLARALTIIGAAEQNSEHPIASAIVHFAKEMLNVQISFGKSSNFQSVPGCGIRATVSNYEQALRQACNAERIINYENLWRTHPHSEIAVDNGASIDQLQLQHKFVEQQQLLALDGALDLEQQLRQQQHPPQDQPPLIDGPEIHVLIGNREWMQRNAIEVPLEISDCMTREEHKGHTAVLCALNGQLVCMFAVADMVKPEAHLAVYTLKRMGIDVVLLTGDNKNTAASIAREVGIRTVYAEVLPSHKVAKIQRIQQRGVRVAMVGDGVNDSPALAQADVGITIAAGTDVAAEAADIVLMRNDLLDVVACLDLSRCTVRRIRYNFLFASMYNLLGIPLASGLFAPFGFTLQPWMASVAMAASSVSVVCSSLLLKMYRKPTAKTLRTAEYEAQLAAERARRYGSSETELDKLSLHRGLDDLPELMNGKRMAAFKRSNTSLISRIFSANTNGNGNGKHEEGLLQDANERTPRILQSRYLGDTTELQKL"
     polyA_site      4134
                     /gene="ATP7"
                     /experiment="COORDINATES: polyA evidence [ECO:0006239]"
ORIGIN      
ctcgcacactcgcacacacacacacacactcgcacacacacacgcgcgccactgataaattgtaaagcaacaataaacaagaaaaaataaaagtccaattagaccaacaaaacaaacaccaatacgaaacgagtcagtgaaatgcaaatttaaaatgaatgacgaccaaatcgcgaatgccaaaaatgcgcacgccacaatcgaacagctgattaatcgggcgccaacgccaacgccagcagcgctgcagcctgttgctgccgccaccgacgcagccgccgacgcagtcgccgacgccaccgcgaacatggccagcgtgcgtttacccattgtgggcatgacctgccagtcgtgcgtgcgcaacattgagtcccatatgggccagcagccaggcgtgatcaaggcgcgtgtccagctgtcggagaacgccggctactttgactacgtgcccagccagatggatgccggccgcattgccaacctgatcgatgagatgggcttcgagtgcagctatcagccggaaataagcccggccagcgctagcgcccaattgcgcatcctgggcatgacgtgccagtcgtgtgtgcgcaacattgaggctcatgtgtccagcaagccgggcgtccaccacatcgaggtgcagctggccgagaagagcgctcgcgtccagtacgatcccgatcagctgacggcggcgagcattgctgaaattatcgatgacatgggctttgaggcgagcgtggccaatgatctgaatgccacagcgcctgtgtccacgcccacgcccacgtccacacccaaatctacgcccacaccgaagcgaacggcaacgccgaggcattcacctggcaagcaactgtcgacaggcacaacaaacggtgctgccaccttggtgcccgtggagcaggagctgctcacgaaatgctttctccatatacggggcatgacctgcgccagctgtgtggcggccattgagaagcactgcagaaagatctatgggctggatagcatattggtggcattgctcgccgccaaggcggaggtcaagtacaatgcgaatgttctcaccgccgagaatattgccaaaacaataaccgagctcggctttcccacggagctcatcgatgagcccgacaacggtgaggccgaggtggagctggaaatatcgggcatgacctgtgcctcctgtgtcaacaagatcgagactcacgtgctcaagctgcgcggcgttacggccgcttcggtcacgctgctaacaaaacgcggcaaattccgatacatcaccgatgacacgggaccccggagcatctgcgaggccatcgaggcgctcggcttccaggcgaagctgctcagtggccgggacaagatggcgcacaattatctggagcacaaggaggagatacgaaagtggcgaaacgcgttcctcatctcgctgatctttggcgggccgtgcatggtcgccatgatctactttatgctggagatgagcgacaaggggcacgcgaacatgtgctgcctggtgccgggcctctccatggagaacttggtcatgtttctgctctcgacgccggtgcaattctttggcggctatcacttctatgtgcaatcgtatcgcgccatcaagcacggcaccaccaacatggatgtgctcatctcaatggtgacgaccatctcctatgtgtactccgtggcggtggtcattgccgccgtgctcatggaacagaatagctcgccgctcacatttttcgatacgccgccgatgctgctgatcttcatctcgctgggccgctggctggagcacatagccaagggtaagacgtcggaggcgctatccaagctgttgtccctgaaggcagccgatgcgctgcttgtggagatctcgccggactttgacatttccagcgagaagacgatctctgtcgattatgtgcagcgcggcgatgtgctcaaggttatacccggcgccaaggtgcccgtcgacggcaaggtgctctatggccattccagctgtgatgagtccctcatcaccggcgaatcgatgccggtggccaagcggaagggtgccgttgtcatcggtggctcaatcaatcggaacggtatgctgctcgtggaggccacgcataccggcgagaacacaacgctggcccagattgtccggctcgtcgaggaggcacaaacatcgaaggcgcccatccaacagctggcggatcgcattgccggctactttgtgcccttcgtggtggccatatcgagcgttacgctcattggctggatcattgccggctttgtcaatcccgatctggtgccagtggccatggagcacaagatgcatatggatcgcaatacaattgtgatcagttatgcgttcaagtgtgcgctcagcgttctggcgattgcctgtccctgtgccttgggcctggccacgcccaccgctgtcatggttgccaccggcaccggcgccacaaatggcgtcctggtgaaaggtgccaccgccctggaaaatgcccacaaggtcaagactgtggtcttcgacaagacgggcaccatcacacatggcacacccatgaccagccgggtgacgctctttgtgccgccccaggtatgcagtttggcccgtgccttgaccatcattggcgccgccgagcagaacagcgaacatcccattgcctcggcgattgtgcacttcgcaaaggagatgctaaacgtgcagattagctttggcaagagctcgaactttcagtcggtgcccggatgcggaatacgcgccaccgtctccaactatgagcaggcgctgcggcaggcctgcaatgcggagcggatcatcaactatgagaatctgtggcgcacccatccgcacagcgagatcgctgtggacaacggtgccagcattgaccagctccagctgcagcacaagttcgtggaacagcagcagctgctggctctggacggcgcactcgatctggagcagcagctgaggcagcaacagcacccgccacaggatcaaccgcccctgatcgacggacccgaaatccatgttctgatcggcaatcgcgaatggatgcagcgcaatgccatcgaggtgccgctggagatcagcgattgcatgacccgcgaggagcacaagggacacaccgctgtcctctgcgccctgaacggtcagctggtctgcatgttcgccgtcgccgacatggtcaagccggaggcccatctggccgtctatacgctcaagcgcatgggcatcgatgtggttctcctgaccggcgacaacaagaacacagcggcgagcatagcccgtgaggtgggcatacgcaccgtctatgcggaggtgctgccttcacacaaggtggcaaaaatccagcggatacagcagcgcggcgtgcgggtcgccatggtgggcgacggcgtcaacgacagccccgccttggcgcaggccgatgtgggcataacgattgccgccggaacagatgtggccgccgaggcggcggacattgtgctgatgcgcaacgatctgttggatgtggtcgcctgcctggatctgtcccgctgcacggtgcgtcgcatacgctacaatttcctgttcgccagcatgtacaatctgttgggtataccgcttgccagcggtctgtttgccccattcggtttcacactgcagccctggatggcatcggtcgccatggcggccagttcggttagcgtcgtctgctcctccctgctgctcaagatgtatcgcaagccgacggcgaaaacgttgcgcaccgccgaatacgaggctcagctggcggcggagcgtgccagacgctatggctcctccgaaacggagctggacaaattgtcgctgcatcgcggcctcgacgatctgcccgagctgatgaatggcaaacggatggccgcatttaagcgctccaatacgtcgctcatctcgcgcatctttagcgccaataccaatggcaatggcaacggcaagcacgaggagggcctgctccaggatgccaacgagcggacgccaaggattctgcagtcccgctatctgggcgacaccaccgagctgcaaaagctctgaagcgaccacaatgaaagagcactgcatatatgtccatatataaatataacatatagaaatccttaactataaat
//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]