LOCUS       XM_061587864            1952 bp    mRNA    linear   VRT 18-DEC-2023
DEFINITION  PREDICTED: Rhineura floridana vimentin (VIM), mRNA.
ACCESSION   XM_061587864
VERSION     XM_061587864.1
DBLINK      BioProject: PRJNA1052099
KEYWORDS    RefSeq.
SOURCE      Rhineura floridana
  ORGANISM  Rhineura floridana
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Lepidosauria; Squamata; Bifurcata; Unidentata; Episquamata;
            Laterata; Lacertibaenia; Amphisbaenia; Rhineuridae; Rhineura.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_084489) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_030035675.1-RS_2023_12
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Gnomon; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 12/15/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1952
                     /organism="Rhineura floridana"
                     /mol_type="mRNA"
                     /isolate="rRhiFlo1"
                     /db_xref="taxon:261503"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /country="USA: Gainsville, Florida"
                     /lat_lon="29.6595 N 82.3174 W"
                     /collection_date="2020-02-14"
                     /collected_by="David Blackburn"
     gene            1..1952
                     /gene="VIM"
                     /note="vimentin; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 94 Proteins"
                     /db_xref="GeneID:133365624"
     CDS             256..1641
                     /gene="VIM"
                     /codon_start=1
                     /product="vimentin"
                     /protein_id="XP_061443848.1"
                     /db_xref="GeneID:133365624"
                     /translation="

MSTATNSRSSYRRMFGGGSRPSTSGSTRYVTSSSRYSLGSAIRPSSVRLVSSAPSGGIYATKSVRLRSSLPPMRLIGDAGVDFSLADAINSEFKANRTNEKAELQELNDRFASYIDKVRFLEQQNKILLAELEQLKGKGTSRLGDLYEEEMRELRRQVDQLTNDKDRVEVERDNLADDIMRLREKLQDEMLQREEAENTLQSFRQDVDNASLARLDLERKVESLQEEIVFLRKLYDEEIRELQAQIQEQHIQIDMDVAKPDLTAALRDVRQQYESVAAKNLQEAEEWYKSKFADMSEAASRNNDALRQAKQEASEYRRQIQSLTCEVDALKGTNESLERQMRELEDNFNLEAANYQDTIVRLQDDIQNMKEEMARHLREYQDLLNVKIALDMEIATYRKLLEGEESRITMPIPTFASLNLRETNLESIPVDTHSKRTLLIKTVETRDGQVINETSHHDDLE"

     polyA_site      1952
                     /gene="VIM"
                     /experiment="COORDINATES: polyA evidence [ECO:0006239]"
ORIGIN      

gcagaagagaggccccgcccgctctttcctcgcccatcccgcctttccctggggacctctacagagcgccatcggcctcaggacaagcggcgcgggattggcttttgttggacggagggcgtgactgaagtataagaggcgcgccgggctcactcaagcgctttccaccgcctcttcctccagcagcgcgcagcagctgaagtccttgaagtcactgctaccctgggattaccgctctcctctcggattacaaagatgagtaccgcgactaatagccggagctcttaccgccgcatgttcggtggcggcagccggcccagcacttcggggagcacccgctatgtcacgtcttccagccgctactcgctgggcagcgccatccggccgagcagcgtccgcctggtctcttccgcgcccagcggcgggatctacgccaccaagtcggtgcggctgcggagcagcctgccgccgatgcgcctgataggcgatgctggcgtggacttctccttggccgacgccatcaactctgagttcaaggccaaccgcaccaatgagaaagccgagctgcaagagctcaacgaccgcttcgccagctacatcgacaaggtgcgctttctcgagcagcagaacaagattctgctggccgaattggagcagctcaaaggcaaaggcacctctcgcctgggcgacctctacgaggaggaaatgcgcgagctccgccggcaggtggaccagctcaccaatgacaaggaccgcgtggaggtggagagggacaatttggccgacgacattatgcgcctccgagaaaaacttcaagatgagatgcttcagagggaagaagctgagaacaccctgcagtctttcagacaggatgttgacaatgcctccttggcccgtctggatcttgaacgcaaagttgaatctctgcaagaagagattgttttcttgaggaagctttatgatgaggaaatccgtgagctgcaggcccaaatccaggaacaacatatccagattgacatggatgttgctaagcctgatctcactgctgccttgcgtgatgtgcgtcaacagtacgaaagtgttgctgctaagaaccttcaggaagctgaagagtggtacaaatctaaatttgcagatatgtctgaagcagcctccagaaacaatgatgccctgcgccaggccaaacaagaagcatctgagtatcgcaggcaaattcagtctctcacctgtgaagtggatgcacttaaaggaactaatgaatccctggaacgccagatgcgtgagttggaggataactttaatcttgaagctgctaactaccaagacactattgtccgcctccaggatgatattcaaaacatgaaggaagaaatggctcgccatcttcgcgagtaccaagacctgctgaatgtaaagatagctcttgatatggagattgccacttacaggaaactgctggagggagaagagagcagaattacaatgcctattccaacttttgcttccctgaacctaagagaaacaaaccttgagtctatcccagtggacacccactcaaagagaacactccttatcaagactgttgaaactagggatggacaagtgatcaatgaaacttctcatcatgatgacctggagtgaagagagcacagcacatcttccttgtgccgaaacgaacccttaccagcgaaactaaaaaaagagcttttcaagtgcctttctgcagttttttccaagagcgcaaggtggttatgctagaagaaataggtcttagatcatgcaaaattgactctcttgagggcttagaagagcttacaaaaatggagtctagttcagatagcaatatcttgtgcctgcaatactgttttttaagtttctgaattgaataaaactgctttttcagcacagtatgagcaacctctcactgcttcaataaacatttgggcaatggc

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