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2024-11-01 08:34:25, GGRNA.v2 : RefSeq release 226 (Sep, 2024)

LOCUS       XM_061002409            4945 bp    mRNA    linear   INV 16-NOV-2023
DEFINITION  PREDICTED: Metopolophium dirhodum repetitive organellar
            protein-like (LOC132935789), mRNA.
ACCESSION   XM_061002409
VERSION     XM_061002409.1
DBLINK      BioProject: PRJNA1037065
KEYWORDS    RefSeq.
SOURCE      Metopolophium dirhodum (rose-grain aphid)
  ORGANISM  Metopolophium dirhodum
            Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
            Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
            Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Metopolophium.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_083560) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_019925205.1-RS_2023_11
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Gnomon; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 11/09/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4945
                     /organism="Metopolophium dirhodum"
                     /mol_type="mRNA"
                     /isolate="CAU"
                     /host="Triticum aestivum"
                     /db_xref="taxon:44670"
                     /chromosome="1"
                     /tissue_type="whole body"
                     /geo_loc_name="China"
                     /collection_date="2018-05"
     gene            1..4945
                     /gene="LOC132935789"
                     /note="repetitive organellar protein-like; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 33 Proteins"
                     /db_xref="GeneID:132935789"
     CDS             231..4403
                     /gene="LOC132935789"
                     /codon_start=1
                     /product="repetitive organellar protein-like"
                     /protein_id="XP_060858392.1"
                     /db_xref="GeneID:132935789"
                     /translation="
MTWIKIEKKMKKKNKLSTRNIISSTYLEEYTGKWNTSTQLTTILHDKKAKKLYTTICDDKDKTEANLNKNALIKCILYSNASENEKELTILKKNKKRKRDKKQVQNNENLKTDKTMLKTSKLYTETIDDNDTDLNMEKTVDSNLNKDELTRIPIANASESDFLFKKKKKKKKSDRKMVQNDKDSTNSKATLNVGKYFDETVHDNYKHLDKDETRDSNLNKDELTRIPIANASESDFLFKKKKKKKKSDRKMVQNDKDSTNSKATLNVGKYFDETVHDNYKHLDKDETRDSNLNKDELTRIPIANASESDFLFKKKKKKKKSDRKMVQNDKDSTNSKATLNVGKYFDETVHDNYKHLDKDETRDSNLNKDELTRIPIANASESDFLFKKKKKKKKSDRKMVQNDKDSTNSKATLNVGKYFDETVHDNYKHLDKDETRDSNLNKDELTRIPIANASESDFLFKKKKKKKKSDRKMVQNDKDSTNNKATLNVGKYFDETVHDNYKHLDKDETRDSNLNKDELTRIPIANASESDFLFKKKKKKKKSDRKMVQNDKDSTNSKATLNVGKYFDETVHDNYKHLDKDETRDSNLNKDELTRIPIANASESDFLFKKKKKKKKSDRKMVQNDKDSTNSKATLNVGKYFDETVHDNYKHLDKDETRDSNLNKDELTRIPIANASESDFLFKKKKKKKKSDRKMVQNDKDSTNSKATLNVGKYFDETVHDNYKHLDKDETRDSNLNKDELTRIPIANASESDFLFKKKKKKKKSDRKMVQNDKDSTNSKATLNVGKYFDETVHDNYKHLDKDETRDSNLNKDELTRIPIANASESDFLFKKKKKKKKSDRKMVQNDKDSTNSKATLNVGKYFDETVHDNYKHLDKDETRDSNLNKDELTRIPIANASESDFLFKKKKKKNKGDKKMVQNDKDSTNSKATLNVGKYFDETVHDNYKHLDKDETEDSNLYKDSSALSDIEYVNVLLKTPLKKKTNSKIAIKEYTESSKYESIQTFLKNMEYLNKVITEEQPNEIYNGSAMIYTPYNSRISKVHEQYPELFQKLLEKKRKVTKKSIKVVNSKEVMSPKKRKRRTPDKEYSKNDPLQSVDTNVETYVGNNYNVEGGTKKLEFFDSLDDQTSEYCTMADTGMYFGQYSNQTANNAYGVHGHKNVLTGNTPLQCNVCFKTFTYRSILARHQIMHTGEKPYACNFCGRSFSQGSTLARHKRMHTGEKPYACNVCGRSFAQRSSLVTHNRTHTGEKPYACNVCGRSFAQRSILVTHTRTHTGEKPYACNVCGRSFFQRSNLVSHNRTHTGEKPYACNVCGRSFAQRSSLVTHNRTHTGEKPYACNVCGRSFSLGSTLAKHNRTHTGERPFKCGHCEKKFTSSGNCKRHTLSVHTKCF"
ORIGIN      
atatttcccaaattcccaatgggcaatggctatcatttaattatgacgttttatctgtgatattagttttacaaaattaatttaattgttatatcgtgtactgtgtagaaatatacaagtttagaattgtatattacaaatatatatattttttttgtaatttatagtttcttttacattcgttatatagtgacaaaaatcaaattaatgccggctgattacaaattataatgacctggataaagattgaaaaaaaaatgaagaaaaaaaataagctatcaactagaaatataatttcatctacttatcttgaagaatatacagggaaatggaatacatcaactcagttaaccaccatattacatgataagaaggcaaagaagctttatactacgatatgtgatgacaaagacaaaacagaggctaatttaaacaaaaatgcattgataaaatgtattctttattctaatgcttcagaaaatgaaaaagaactgacaatattaaaaaaaaataaaaaaaggaaaagagacaaaaaacaggtacaaaataatgaaaatttaaaaaccgataaaactatgttgaagaccagtaagttgtatactgagaccattgatgacaatgacacagatttgaatatggaaaaaacagttgattctaatttaaacaaagatgaattgacaaggattcctattgccaatgcttcggaaagtgactttttatttaaaaaaaagaagaagaaaaagaaatcagatagaaaaatggtacaaaatgataaagattcgacaaacagtaaagctacattgaatgtaggaaagtattttgatgagaccgttcatgacaattacaaacatttggataaagacgaaacaagggattctaatctaaacaaagatgaattgacaaggattcctattgccaatgcttcggaaagtgactttttatttaaaaaaaagaagaagaaaaagaaatcagatagaaaaatggtacaaaatgataaagattcgacaaacagtaaagctacattgaatgtaggaaagtattttgatgagaccgttcatgacaattacaaacatttggataaagacgaaacaagggattctaatctaaacaaagatgaattgacaaggattcctattgccaatgcttcggaaagtgactttttatttaaaaaaaagaagaagaaaaagaaatcagatagaaaaatggtacaaaatgataaagattcgacaaacagtaaagctacattgaatgtaggaaagtattttgatgagaccgttcatgacaattacaaacatttggataaagacgaaacaagggattctaatctaaacaaagatgaattgacaaggattcctattgccaatgcttcggaaagtgactttttatttaaaaaaaagaagaagaaaaagaaatcagatagaaaaatggtacaaaatgataaagattcgacaaacagtaaagctacattgaatgtaggaaagtattttgatgagaccgttcatgacaattacaaacatttggataaagacgaaacaagggattctaatctaaacaaagatgaattgacaaggattcctattgccaatgcttcggaaagtgactttttatttaaaaaaaagaagaagaaaaagaaatcagatagaaaaatggtacaaaatgataaagattcgacaaacaataaagctacattgaatgtaggaaagtattttgatgagaccgttcatgacaattacaaacatttggataaagacgaaacaagggattctaatctaaacaaagatgaattgacaaggattcctattgccaatgcttcggaaagtgactttttatttaaaaaaaagaagaagaaaaagaaatcagatagaaaaatggtacaaaatgataaagattcgacaaacagtaaagctacattgaatgtaggaaagtattttgatgagaccgttcatgacaattacaaacatttggataaagacgaaacaagggattctaatctaaacaaagatgaattgacaaggattcctattgccaatgcttcggaaagtgactttttatttaaaaaaaagaagaagaaaaagaaatcagatagaaaaatggtacaaaatgataaagattcgacaaacagtaaagctacattgaatgtaggaaagtattttgatgagaccgttcatgacaattacaaacatttggataaagacgaaacaagggattctaatctaaacaaagatgaattgacaaggattcctattgccaatgcttcggaaagtgactttttatttaaaaaaaagaagaagaaaaagaaatcagatagaaaaatggtacaaaatgataaagattcgacaaacagtaaagctacattgaatgtaggaaagtattttgatgagaccgttcatgacaattacaaacatttggataaagacgaaacaagggattctaatctaaacaaagatgaattgacaaggattcctattgccaatgcttcggaaagtgactttttatttaaaaaaaagaagaagaaaaagaaatcagatagaaaaatggtacaaaatgataaagattcgacaaacagtaaagctacattgaatgtaggaaagtattttgatgagaccgttcatgacaattacaaacatttggataaagacgaaacaagggattctaatctaaacaaagatgaattgacaaggattcctattgccaatgcttcggaaagtgactttttatttaaaaaaaagaagaagaaaaagaaatcagatagaaaaatggtacaaaatgataaagattcgacaaacagtaaagctacattgaatgtaggaaagtattttgatgagaccgttcatgacaattacaaacatttggataaagacgaaacaagggattctaatctaaacaaagatgaattgacaaggattcctattgccaatgcttcggaaagtgactttttatttaaaaaaaagaagaagaaaaataaaggagataaaaaaatggtacaaaatgataaagattcgacaaacagtaaagctacattgaatgtaggaaagtattttgatgagactgttcatgacaattacaaacatttggataaagacgaaacagaggattctaatttatacaaagattcgtccgccttatcagatatagaatatgttaatgttttgttaaaaactcctttaaaaaagaagacaaattctaagattgcaataaaagaatatactgaatcgtcaaaatatgaatctatacaaacatttcttaaaaatatggaatacctgaataaagttataactgaagaacagccaaatgagatttacaatggttctgctatgatttacactccatacaattcaagaatttcaaaagtccatgaacagtaccctgaattatttcaaaaattattggaaaaaaaaaggaaagttacgaaaaaatctattaaggttgtaaatagtaaagaagtaatgtcaccgaaaaaacgtaaacgacggacgcctgataaagaatattcgaaaaacgatccccttcaatcagtggatacgaatgtggagacatatgttggtaataattataatgtcgaaggcgggactaagaaattagaattttttgattctttggacgatcagacgtcggaatattgcaccatggccgacacaggtatgtattttggccaatattctaatcaaacggctaacaacgcctacggtgtacatggtcacaaaaatgttctcactggaaacactcctctccagtgcaacgtttgctttaaaacgtttacctatagatccattttggctagacatcaaataatgcacaccggtgagaaaccatatgcgtgcaacttttgtggccgatcattttcgcaagggtcaactttggctagacataaaagaatgcacaccggtgagaaaccatatgcgtgcaacgtttgtggccgatcatttgcgcaaaggtcaagtttggtcacacataatagaacgcacaccggtgagaaaccatatgcgtgcaacgtttgtggccgatcatttgcgcaaaggtcaattttggttacacatactagaacgcacaccggtgagaaaccatatgcgtgcaacgtttgtggccgatcattttttcaaaggtcaaatttggtttcacataatagaacgcacaccggtgagaaaccatatgcgtgcaacgtttgtggccgatcatttgcgcaaaggtcaagtttggtcacacataatagaacgcacaccggtgagaaaccatatgcctgcaacgtttgtggccgatcattttctctagggtcaactttggctaaacataatagaacgcacaccggcgaaagaccattcaagtgcggtcattgtgaaaaaaagtttacatcaagcggtaactgtaaaagacatacactaagtgttcataccaaatgtttttaaattcgttactattattgttgtatgacccattactcaagaaaaataaactataaacatcaaattatgtatgaaaacgtccaatcatcattcattgcagtaagggttctcgacttagaaaacgctatcacagtatcacttcatcgtaaacgtttaaatacctatatgcttgggcataagcaaaaccactctgtcgacgacgatcgcccgttgtgtagtagcttcaatgctctctgtctggcgttgttgttgcgtatactttacattaatgattgtattgcttctccttcaactgtttaatagcaatgaaaatatttctattccagaatgcttttgtaataagcggatagcgagtattacctaatcgactaaaattatataatgtacatattagttataagttataaccttagactgtagtcctatttgattgtgtaataaataccacccaatcatattaaattcaaatgaaattcagtttttatagaattaggtttttgttatgtacatttattttatctatagacgaaagttgaataataaaa
//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]