LOCUS       XM_056590091            4015 bp    mRNA    linear   VRT 30-MAY-2023
DEFINITION  PREDICTED: Gadus chalcogrammus NRDE-2, necessary for RNA
            interference, domain containing (nrde2), mRNA.
ACCESSION   XM_056590091
VERSION     XM_056590091.1
DBLINK      BioProject: PRJNA975890
KEYWORDS    RefSeq.
SOURCE      Gadus chalcogrammus (walleye pollock)
  ORGANISM  Gadus chalcogrammus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Actinopterygii; Neopterygii; Teleostei; Neoteleostei;
            Acanthomorphata; Zeiogadaria; Gadariae; Gadiformes; Gadoidei;
            Gadidae; Gadus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_079416) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_026213295.1-RS_2023_05
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Gnomon; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 05/25/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4015
                     /organism="Gadus chalcogrammus"
                     /mol_type="mRNA"
                     /isolate="NIFS_2021"
                     /db_xref="taxon:1042646"
                     /chromosome="5"
                     /sex="female"
                     /tissue_type="Muscular tissues"
                     /dev_stage="adult"
     gene            1..4015
                     /gene="nrde2"
                     /note="NRDE-2, necessary for RNA interference, domain
                     containing; Derived by automated computational analysis
                     using gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 4 Proteins"
                     /db_xref="GeneID:130382378"
     CDS             47..3631
                     /gene="nrde2"
                     /codon_start=1
                     /product="nuclear exosome regulator NRDE2"
                     /protein_id="XP_056446066.1"
                     /db_xref="GeneID:130382378"
                     /translation="

MALFPAFAEVTATNLDDSSKDWLTNKSFRADDALALNERALKASRSQNQDDSREVSSEEEKEEEEEEKKTRGEEDDKPPKKKKKKKEKKKKKKKHKKRDRSSSVSSGSGSDTVYPSDLKREQEREREKPAPLASRFSWLDDVRSPTERPFCVDNKPDQANWTYKSLYRGDVARYRRKGSSSLGLDPRFQAITWEESEQSAKKKKKADVKRRRADRYFSKDSQELLRAEPAVPSLPRIGAGDEPPRIIDFITLAGEGGLSRGETAGRVLTSPANPLGVYDAGTALWAQGKGKQEAPEDQSQATAQDQRVASLSEKTGDYNRRLREEPGDTQLWMEFIHYQDEQSETVFGGGGEPDSAERRRASYRGVVEKKLSVAERAVALNPSCVALQLERLRLCRELWEPAALAKEWKKLVFLHPNSPSLWREYLLFTQSHFSTFTVSRVNAAYGKCLSTLSAVQDGSMVSHLAIAGTEEEMLDLFIQQCHFLRQCGHSEKAVSLFQAMMDFTFFKPDTVRGLPTRQQVEFFEPFWDSGEARIGEVGARGWKAWMLQQERGGWLQPSAEDDEDEEEEEEELKDRERPRWELWLNVESSREATHWLPWRPEKGQTVEDCEDPDRQVLFDDIGPSLIHLASPELQRRLLLSFLSFMGMPVDSVLLGAPCQSSLLMEDLTLLTQGNDPQRPLSGYDLQNTGVHTVGHMTTLQGSRKWAGLGKQGEEFLTNAFHLLLPQLAPPHRAALSLCWIRYEKLKVLRCLCGGSKKRLRSQGKSSKRVAKRLLKEPDNRSALALWREYGHLEWLLGNADDARKVFSAATAMGGAKGLGCPALCDLCLLWAQLECEEGAGEGRKGGPGDATSAPAVGVLTRLAEGTPSAPGAAAPTPVAVLKARRTYEQALTDRLAALEKDLRKWGEGKKGDGPKLRGLVGCYALYQHLTVGVQATNAVYGQAREGTEGLHGALTLASDNHAGASGGPGAAGTEAGRLCAQRLAFECEALAVQHAALLRYHLSTSVFPLATLRHALTSSLSAWPQCAPLWTVYLQVENRYHSAGRARRFFHSVTRGRKDIVPRLFAIVAEQQRKQLVDATQRFESHDGALPILPENGLGNRIRGLFGNALLSEMGAHCPLLWRMYMHFLVSEGKLDNAKAIFYKALQNVPWSKGLYMDAVQLFPGHLQEFVDLMTEKELRLRLPLEELDILLED"

     misc_feature    491..>751
                     /gene="nrde2"
                     /note="MTR4-interacting domain (MID) found in nuclear
                     exosome regulator NRDE2 and similar proteins; Region:
                     NRDE2_MID; cd22200"
                     /db_xref="CDD:412062"
     misc_feature    998..1984
                     /gene="nrde2"
                     /note="necessary for RNA interference; Region: NRDE-2;
                     pfam08424"
                     /db_xref="CDD:429988"
ORIGIN      

gacgccgtcttcctgcgaccataacgctgttcataatatcaacaacatggctctgttcccagctttcgcagaagtcacggccacaaacctggatgattcttccaaagactggttgacaaataagagttttcgagctgatgatgcattggctctcaacgaacgggctttaaaggccagcagaagtcagaaccaagatgattcaagggaggtgagctctgaggaggagaaggaggaggaggaggaggagaagaagacgagaggggaggaggatgacaagcctcccaaaaagaagaaaaagaagaaggagaagaagaaaaagaagaaaaaacataagaagagggacaggagctcttcagtcagtagcgggtcgggctctgacaccgtttatcccagtgacctcaagagggagcaggagagagaaagggaaaagcctgctccgctggccagtcgtttctcctggcttgatgacgtgcgttcccccactgagcggccgttctgcgttgacaataaaccagatcaagctaactggacctacaagtccctgtacaggggggacgtggccaggtacagacggaagggctcgtcctcgctgggcctggaccctcgctttcaggcgattacttgggaggagtcggagcaaagtgccaaaaaaaagaagaaagctgacgtcaagaggagaagggcggaccgatacttttcgaaggatagtcaggagctgctgagagccgagcccgctgtgccatcactgcccaggatcggagcaggcgatgagccgccccgaattatcgactttattaccctggctggtgaaggaggattaagcagaggagagactgcggggagggtgctgacgtcgccggcgaaccccctgggcgtgtacgatgccggcacggccctgtgggcccaggggaaggggaagcaggaggcccccgaggaccagagccaggccacggcccaggaccagagggtggccagcctgtctgagaaaaccggggattacaacaggcgcctgagggaagaaccaggagacacacagctatggatggagttcatacactaccaggatgagcagagcgagacggtgttcggcggcgggggcgagccggactcggcggagcgccggcgggcgtcgtaccgcggcgtggtggagaagaagctgagtgtggcggagcgggccgtggccctcaacccgtcctgcgtggccctgcagctggagcggctgcggctctgcagggagctgtgggagcccgccgccctggccaaggagtggaagaaactggtgttccttcaccccaacagcccctccttgtggcgggagtacctgctgttcacccagagtcacttcagcaccttcaccgtgtccagggtcaacgcggcctacgggaagtgtctgagcacgctcagtgcggtgcaagacggcagcatggtgtctcacctggccatagcaggaactgaggaggagatgttagacctgttcatccagcagtgtcacttcctgcgacagtgtggccactctgagaaggccgtgtcactcttccaggctatgatggacttcaccttcttcaagcctgacacggttcgaggattgcccaccaggcagcaggtggagttctttgagccgttctgggacagcggggaggccaggatcggtgaggtgggggcccgagggtggaaggcctggatgcttcaacaggagagagggggctggctccagcccagtgcagaggatgacgaagatgaggaagaggaggaggaggagctgaaggatcgggagagacccagatgggagctctggctgaatgtggagtcttccagggaggcaactcattggctgccctggaggccagaaaagggccaaacagtggaggactgtgaagacccagacagacaggtgttgtttgacgacatcgggccctcgttgatccacctggcgtccccagagctccagcgccgtctgctcctctccttcctgtccttcatggggatgcctgtggactctgtgctcctgggtgccccctgtcagagcagcctcctgatggaggacctcactctgctcacacagggcaacgacccccagcgacctctgagcggctacgacctccagaacacgggagtccacacggtgggtcacatgacaacgctgcaggggtcaaggaagtgggcggggctcgggaagcaaggggaagagttcctcaccaacgccttccatttgctcctcccacaactggccccgccccaccgggcggccctgtccctctgctggatacgctatgagaaactcaaggtcctgcgctgtctctgcggtggcagcaagaagcgcctgcgctcccagggcaagagcagcaagcgcgtggccaagcggctgctcaaggagcccgacaaccgctccgccctggcgctgtggcgggagtacggccacctcgagtggctcctgggcaacgccgacgacgcccgcaaggtgttctcggccgccaccgccatgggaggagccaaggggctgggctgccccgccctctgcgacctctgcctgctgtgggcccagctggagtgtgaggagggcgccggggaggggaggaagggcggccccggggacgcgacctccgccccggccgtgggcgtcctcacccggctggcggaggggaccccctccgcccccggggccgcggcgcccaccccggtggcggtgctgaaggccaggaggacttatgagcaggccctgacggaccgtctggctgccctggagaaggacctccgcaagtggggagagggcaagaaaggagacggaccgaagctaagaggcctggtgggctgttacgccttgtaccagcatctgacggtcggcgtgcaggcgaccaacgcggtgtacggccaagctcgggagggaacggaggggctgcacggggcgctgaccctggcctctgataaccacgccggcgccagcgggggtccgggcgccgccggcacagaggccggcagactctgcgcccagaggctggcgtttgagtgcgaggcgttggccgtccagcacgcggcgctgctccgataccacctcagcaccagcgtgtttcccctggccacgctgagacacgccctcacctcctcgctctccgcctggccccagtgcgcccccctctggaccgtttacttgcaggtggagaaccggtaccacagcgcaggacgggcccgccgcttctttcactcggtgacccggggacgcaaggacatcgtgccacgcctctttgctattgttgccgagcaacaaaggaagcagctggtggacgcgacccagcggtttgaatctcatgatggcgctctacccatcttgccggaaaatggccttggcaaccgtatccggggcctgtttggaaacgcccttcttagtgagatgggtgcccactgtcctctactctggcggatgtatatgcacttcctggtatcggagggtaagctggacaatgccaaagcgatcttctacaaggccttgcagaacgttccctggtctaagggtttgtacatggacgcagtgcagctattccccggacacctccaggagtttgtggacctcatgacggagaaggaactgcgtctcagactgcccctagaggagttggatatactacttgaagattgaatgaacaagcagacattcatgtgaacaaaatgttattcattcttagcctaaaaataatttgatgagaaaggttttttttccatgtatataggtacatcaaatatactttttgagaattggaataaaagtgttttttagaactggtgtttttttttttgtattttcgttctgttaaaccaggtatgtatggacaaaataagcatacagtacttaaatgtaatgttagatcgtctagatgaaataaacataacattaagaaagaacctcaaataaaagtataaataataaaacccaccacgaacgaagacgcacaaagcagaaagatattttaaataatttaaatgttccacaaaacgttttgaacgccaattattcgacttttga

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