2024-04-28 10:18:03, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_056345711 4287 bp mRNA linear VRT 25-MAY-2023 DEFINITION PREDICTED: Falco biarmicus NRDE-2, necessary for RNA interference, domain containing (NRDE2), transcript variant X3, mRNA. ACCESSION XM_056345711 VERSION XM_056345711.1 DBLINK BioProject: PRJNA975131 KEYWORDS RefSeq. SOURCE Falco biarmicus (lanner falcon) ORGANISM Falco biarmicus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Falconiformes; Falconidae; Falco. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_079294) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_023638135.1-RS_2023_05 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.1 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 05/22/2023 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..4287 /organism="Falco biarmicus" /mol_type="mRNA" /isolate="bFalBia1" /db_xref="taxon:345155" /chromosome="7" /sex="female" /tissue_type="blood" /dev_stage="adult" /country="Qatar: Doha" /lat_lon="25.286106 N 51.534817 E" /collection_date="2020-02-16" /collected_by="Farooq Omar Al-Ajli, Souq Waqif Falcon Hospital" gene 1..4287 /gene="NRDE2" /note="NRDE-2, necessary for RNA interference, domain containing; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 ESTs, 5 Proteins" /db_xref="GeneID:130152325" CDS 767..3574 /gene="NRDE2" /codon_start=1 /product="nuclear exosome regulator NRDE2 isoform X3" /protein_id="XP_056201686.1" /db_xref="GeneID:130152325" /translation="
MLNTDGILVCSKSSSSDPAAFVPVFQMEAEDPSDTTEVNPLGIYDPSTTVWLQGNGSKSTEPVNAQQAVQEPVINMNSILMTKVEEHNKKVRENPRDINAWMEFVSFQDELMRGPSPYASKGEQEVRRKSLKLILEKKLAILERAIESNPSNVDLKLARLKICAEFWEPPALIKEWQKLIFLHPNNPELWKKYLLFCQSQFTTFSVSKINSLYGKCLTTLAAVQDGSMVSHPLLPGTEEAMLAIFIQQCHFLRQAGHSEKAVSLFQALIDFTFFKPDSVKDLPTRGQVEFFEPFWDSGEPRIGEKGARGWKAWMHQQEKGGWIALKPDDDDDDEEIDEDQEIKDKTLPKWHIWLDVEYSREARHWLPWRPDKTKKEMEEDCEDPERQVLFDDLGPSLIQLSNPDLQRQLLYSFLQFLGVPCTSKLFPSNLYIAMDENNIFESVLSDEKPLTSVEFPLSGFNSIGHMDTMLRGRHHIGHYKEGEEFIQNVFHVLFLLFSGKEKSNLSICWLQYEISKVVQCLQAKKKKKLKAQGRKSKKLAKNLLKAPDNRNHLSLWKLYAYLEWLLGNIDDARKVFDTALCTAGTEGLKSPQICSLSLLYAQLEVELLESIEGAVMSRAVHILTKLAESGPYVPYSGQVLAVNVLKARKTYEHALQDYLSKPPVSDQVGDANQLVNLVGCYALFQYLTVGIDAAVLIYAQTSEKLEALGPQKCENTGENFGIRNFSTALEAVTLLHTNLLRFHMKISVYPLNPLREALTEALKRYPSNRSLWRSYIHIQRKSHSASKARRFFDGVTRSTNSLEPWLFAIQAEQMRKKLIENVQRADVGEIHSTIPETGLTNRIVALFEHAVQSENGTHCPLLWRMYLNFLTSLGKKEKSRGLFYKALQNCPWAKVLYMDAVEYFPDHLQETLDLMTEKELRVRVPVEELDLLLEV"
misc_feature 1022..2020 /gene="NRDE2" /note="necessary for RNA interference; Region: NRDE-2; pfam08424" /db_xref="CDD:429988" polyA_site 4287 /gene="NRDE2" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN
tggcccgcacaggcgcactccgcgcaaggcgcgccgctgcccgtgtgaaaaaagttactagttacgaataaagttaatttctgtgagataactcgcggggaacccgaaatagggacgttcccattcccttcgcattggcgggttctcagagttggactggcttagtaacccaagcttctctacagaagatgcactattactgcatcagcgcactgcagaagctgtaaacctcagtcctgaaaaatcaccactaataaggactacttcaaggtcagagttgtcagaggaaagtgatacagatgagactctgaaacagtcaagtaagaaaagaaaaaagaaaaagaaaaaacatcaccactataagagggcaaaaaagaaaaccaaaggggactccagtaacagtgaatcagacctggacaccaagtacatcaaggacaaaaccacaggaagtgggagaaataacgaaaaggaagcagcagcaaatccagataagaaaacaccaaatcttaccagcagtcgcttgctttggcttgatgatatccaggctttcacagcagaaaccttcagaatagacaagaaaccagaccctgcaaactgggcctacaaatccctgtatcgaggggacatagcaagatacaaaaggagaggagagtcctgtcttggcatagatgcaaagaaacagtgtataacttgggacagttctgcatcaaaaaggaagcagttacagaggcgacctgagcgctacttcacaaagaacaatgtgaagatgctgaacacagatgggattcttgtttgcagtaaaagttcttcatctgacccagctgctttcgtaccagttttccaaatggaagctgaggatccttctgacacaacagaggtaaatcctcttgggatttatgatccatcaactacagtgtggctacaagggaatgggagcaagagtacagagcctgtaaatgcgcagcaagcagttcaagagcctgtgataaacatgaactccattctaatgacaaaagtggaagaacataacaagaaagtcagagaaaacccaagagatattaatgcttggatggaatttgtttcttttcaggatgaattaatgagaggacctagcccttatgccagtaagggagagcaggaagtaagaagaaaatcactgaagttaatcttggaaaagaaactggctattttagagagggcaattgaaagcaatccaagtaatgttgatctgaaacttgctaggctgaagatttgcgcagaattctgggaaccaccagctttgatcaaagaatggcagaagctaattttcttacatcccaataatccggagttgtggaagaaatatctactgttctgtcaaagtcagttcactaccttttctgtttcaaaaatcaatagtctctatggaaagtgtttgactacactggcagctgtacaggatggcagcatggtatcacaccctctactgcctggcacagaagaagctatgctggctatatttattcagcagtgccactttctgagacaggctggccattccgagaaagcagtgtctctgtttcaggctctgattgacttcaccttctttaaacctgacagtgtaaaagatctgccaacaaggggacaggtggaattctttgaacccttttgggatagcggggaaccacgaattggagaaaaaggagcaagaggctggaaagcatggatgcaccaacaagaaaagggtggctggattgctcttaagcccgatgacgatgacgatgatgaagagatagatgaggatcaagaaataaaggataaaactctcccaaagtggcatatttggttggatgtggagtattctcgtgaagcaaggcattggttaccttggaggccagacaaaaccaaaaaggaaatggaagaagattgtgaagatccagaaagacaggtattatttgatgatcttggaccatctttaatccagctttctaatccagatcttcagcgtcaactactctactcatttttgcaattcctgggagttccatgtacaagtaaactcttcccttccaacctctatattgccatggatgaaaataacatctttgagagtgtgctttctgatgaaaagccactgacttctgttgaatttccactttctggattcaacagtattggtcatatggacacaatgctacgagggagacatcacataggccactataaagaaggagaggagttcatacagaatgtttttcatgttctattcctgctattttcaggaaaggaaaaatccaacctgtccatttgttggttacagtatgaaatatctaaggtagttcagtgtctccaagcgaaaaagaagaagaagctgaaagcacaagggaggaagagcaaaaagttggccaagaatctccttaaagcacctgacaaccgaaaccacctttctctctggaaattgtatgcctacctggaatggctgcttggtaacattgacgatgccaggaaggtatttgacacagctctttgcacagcagggacagaaggattgaagagtccccaaatctgcagcctcagtctgctttatgctcagctggaagttgaactactagaaagtatagaaggagctgttatgtcacgtgctgttcatatattgaccaaattggctgaaagtggaccatatgtgccatatagtggacaagtgttagctgtaaatgtcttgaaagctcgtaaaacatatgagcatgcactgcaagattatttaagtaaaccaccagtttctgatcaggttggtgatgctaatcagctggttaacttggttggttgttacgcactgttccagtatttgactgttgggattgatgctgcagtattaatatatgcacagacttcggaaaaacttgaagctcttggtccacagaaatgtgaaaatactggagagaattttggcattcgaaatttttccactgctcttgaagctgtcacactgctgcatacaaatttgctcagattccacatgaaaattagtgtttatcctttgaatcctctgcgagaggcactaacagaggctctgaaacggtatcctagcaaccggtccctttggaggtcatatatccatatccaaaggaagtctcacagtgctagcaaagcacgaagattttttgatggtgtcacaaggtctactaactctttagagccatggctgtttgcaatccaagcagagcaaatgagaaaaaaactcattgagaatgtccagagggcagatgttggtgaaatacattctacgattcctgaaactgggttaacaaatcggattgtagctctatttgaacacgcagttcagagtgaaaatggtacccattgtccactgctgtggagaatgtatttgaactttctgacttcactaggaaaaaaggaaaaaagtagaggattgttttataaagcacttcaaaactgtccttgggcaaaggtgctctacatggacgcagtagagtacttccctgatcatctgcaagagacgcttgatctaatgactgaaaaagaattgagagtgcgggtacctgtggaagagctggatctactattagaggtttaaaagactgtagaagagtggcgaaagtacagaaggtagttctgaagcaaagttagacctgtctcttttcaaacaggagctctgttgagaattgggtactatgtactttttttaaagcttttatataaattgctgtcaaaatggagttctgctagctgcaagtattctggaataaagtactgcattttgcccacaaaaatgcatccatttctttgaagtattgctggctgctacaggaggataccctcttagaaggagcctcctgttgaatgttgcccacatttcttattctgttgtttgaaattacattccctagagttcagcaggaattcagtacgtgccagctatggtttggtgagcagcacaggaaataaacatctgccagatggatgctccactgttctccatttggcaggcttcagtaatttccttcagcttggtatgtgtgtgtgtgtatatgtaactaccaagtcaaacagccgttaaatctgtacaagcagttacatttgtacatatactgttagtaaaagctaagtctttgcttaagcaggcacctgttttggacttggacttgtatgttttaacagatgaccattttaatataaatatttatgagaaatatacctgaatatttgaaaattcaaaaggaacttgaattatttatttcttaatttaatagaactgtgagtgtattaaaaatgaaagtgtatctataa
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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