2024-04-28 00:10:12, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_055800129 4255 bp mRNA linear VRT 02-MAY-2023 DEFINITION PREDICTED: Falco peregrinus NRDE-2, necessary for RNA interference, domain containing (NRDE2), transcript variant X3, mRNA. ACCESSION XM_055800129 VERSION XM_055800129.1 DBLINK BioProject: PRJNA962079 KEYWORDS RefSeq. SOURCE Falco peregrinus (peregrine falcon) ORGANISM Falco peregrinus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Falconiformes; Falconidae; Falco. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_073721) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_023634155.1-RS_2023_04 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.1 Annotation Method :: Best-placed RefSeq; Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 04/26/2023 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..4255 /organism="Falco peregrinus" /mol_type="mRNA" /isolate="bFalPer1" /db_xref="taxon:8954" /chromosome="1" /sex="female" /tissue_type="blood" /dev_stage="adult" /country="Qatar: Doha" /lat_lon="25.286106 N 51.534817 E" /collection_date="2020-02-16" /collected_by="Farooq Omar Al-Ajli, Souq Waqif Falcon Hospital" gene 1..4255 /gene="NRDE2" /note="NRDE-2, necessary for RNA interference, domain containing; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 6 ESTs, 5 Proteins" /db_xref="GeneID:101918926" CDS 741..3548 /gene="NRDE2" /codon_start=1 /product="nuclear exosome regulator NRDE2 isoform X3" /protein_id="XP_055656104.1" /db_xref="GeneID:101918926" /translation="
MLNTDGILVCSKSSSSDPAAFVPVFQMEAEDPSDTTEVNPLGIYDPSTTVWLQGNGSKSTEPVNAQQAVQEPVINMNSILMTKVEEHNKKVRENPRDINAWMEFVSFQDELMRGPSPYASKGEQEVRRKSLKLILEKKLAILERAIESNPSNVDLKLARLKICAEFWEPPALIKEWQKLIFLHPNNPELWKKYLLFCQSQFTTFSVSKINSLYGKCLTTLAAVQDGSMVSHPLLPGTEEAMLAIFIQQCHFLRQAGHSEKAVSLFQALIDFIFFKPDSVKDLPTRGQVEFFEPFWDSGEPRIGEKGARGWKAWMHQQEKGGWIALKPDDDEDDEEIDEDQEIKDKTLPKWHIWLDVEYSREARHWLPWRPDKTKKEMEEDCEDPERQVLFDDLGPSLIQLSNPDLQRQLLYSFLQFLGVPCTSKLFPSNLYIAMDENNIFESVLSDEKPLTSVEFPLSGFNSIGHMDTMLRGRHHIGHYKEGEEFIQNVFHVLFLLFSGKEKSNLSICWLQYEISKVVQCLQAKKKKKLKAQGRKSKKLAKNLLKAPDNRNHLSLWKLYAYLEWLLGNIDDARKVFDTALCTAGTEGLKSPQICSLSLLYAQLEVELLESIEGAVMSRAVHILTKLAESGPYVPYSGQVLAVNVLKARKTYEHALQDYLSKPPVSDQVGDADQLVNLVGCYALFQYLTVGIDAAVLIYAQTSEKLEALGPQKCENTGENFGIRNFSTALEAVTLLHTNLLRFHMKISVYPLNPLREALTEALKRYPSNRSLWRSYIHIQRKSHSASKARRFFDGVTRSTNSLEPWLFAIQAEQMRKKLIENVQRADVGEIHSTIPETGLTNRIVALFEHAVQSENGTHCPLLWRMYLNFLTSLGKKEKSRGLFYKALQNCPWAKVLYMDAVEYFPDHLQETLDLMTEKELRVRVPVEELDLLLEV"
misc_feature 996..1994 /gene="NRDE2" /note="necessary for RNA interference; Region: NRDE-2; pfam08424" /db_xref="CDD:429988" polyA_site 4255 /gene="NRDE2" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN
aggcgcgccgctgcccgtgtgaaaaaagttactagttacgaataaagttaatttctgtgagataactcgcggggaacccgaaatagggacgttcccattcccttcgcactggcgggttctcagagttggactggcttagtaacccaagcttctctacagaagatgcactattactgcatcagcgcactgcagaagctgtaaacctcagtcctgaaaaatcaccactaataaggactacttcaaggtcagagttgtcagaggaaagtgatacagatgagactctgaaacagtcaagtaagaaaagaaaaaagaaaaagaaaaaacatcaccactataagagggcaaaaaagaaaaccaaaggggactccagtaacagtgaatcagacctggacaccaagtacatcaaggacaaaaccacaggaagtgggagaaataacgaaaaggaagcagcagcaaatccagataagaaaacaccaaatcttaccagcagtcgcttgctttggcttgatgatatccaggctttcacagcagaaaccttcagaatagacaagaaaccagaccctgcaaactgggcctacaaatccctgtatcgaggggacatagcaagatacaaaaggagaggagagtcctgtcttggcatagatgcaaagaaacagtgtataacttgggacagttctgcatcaaaaaggaagcagttacagaggcgacctgagcgctacttcacaaagaacaatgtgaagatgctgaacacagatgggattcttgtttgcagtaaaagttcttcatctgacccagctgctttcgtaccagttttccaaatggaagctgaggatccttctgacacaacagaggtaaatcctcttgggatttatgatccatcaactacagtgtggctacaagggaatgggagcaagagtacagagcctgtaaatgcgcagcaagcagttcaagagcctgtgataaacatgaactccattctaatgacaaaagtggaagaacataacaagaaagtcagagaaaacccaagagatattaatgcttggatggaatttgtttcttttcaggatgaattaatgagaggacctagcccttatgccagtaagggagagcaggaagtaagaagaaaatcactgaagttaatcttggaaaagaaactggctattttagagagggcaattgaaagcaatccaagtaatgttgatctgaaacttgctaggctgaagatttgcgcagaattctgggaaccaccagctttgatcaaagaatggcagaagctaattttcttacatcccaataatccggagttgtggaagaaatatctactgttctgtcaaagtcagttcactaccttttctgtttcaaaaatcaatagtctctatggaaagtgtttgactacactggcagctgtacaggatggcagcatggtatcacaccctctactgcctggcacagaagaagctatgctggctatatttattcagcagtgccactttctgagacaggctggccattccgagaaagcagtgtctctgtttcaggctctgattgacttcatcttctttaaacctgacagtgtaaaagatctgccaacaaggggacaggtggaattctttgaacccttttgggatagcggggaaccacgaattggagaaaaaggagcaagaggctggaaagcatggatgcaccaacaagaaaagggtggctggattgctcttaagcccgatgacgatgaagatgatgaagagatagatgaggatcaagaaataaaggataaaactctcccaaagtggcatatttggttggatgtggagtattctcgtgaagcaaggcattggttaccttggaggccagacaaaaccaaaaaggaaatggaagaagattgtgaagatccagaaagacaggtattatttgatgatcttggaccatctttaatccagctttctaatccagatcttcagcgtcaactactctactcatttttgcaattcctgggagttccatgtacaagtaaactcttcccttccaacctctatattgccatggatgaaaataacatctttgagagtgtgctttctgatgaaaagccactgacttctgttgaatttccactttctggattcaacagtattggtcatatggacacaatgctacgagggagacatcacataggccactataaagaaggagaggagttcatacagaatgtttttcatgttctattcctgctattttcaggaaaggaaaaatccaacctgtccatttgttggttacagtatgaaatatctaaggtagttcagtgtctccaagcgaaaaagaagaagaagctgaaagcacaagggaggaagagtaaaaagttggccaagaatctccttaaagcacctgacaaccgaaaccacctttctctctggaaattgtatgcctacctggaatggctgcttggtaacattgacgatgccaggaaggtatttgacacagctctttgcacagcagggacagaaggattgaagagtccccaaatctgcagcctcagtctgctttatgctcagctggaagttgaactactagaaagtatagaaggagctgttatgtcacgtgctgttcatatattgaccaaattggctgaaagtggaccatatgtgccatatagtggacaagtgttagctgtaaatgtcttgaaagctcgtaaaacatatgagcatgcactgcaagattatttaagtaaaccaccagtttctgatcaggttggtgatgctgatcagctggttaacttggttggttgttacgcactgttccagtatttgactgttgggattgatgctgcagtattaatatatgcacagacttcggaaaaacttgaagctcttggtccacagaaatgtgaaaatactggagagaattttggcattcgaaatttttccactgctcttgaagctgtcacactgctgcatacaaatttgctcagattccacatgaaaattagtgtttatcctttgaatcctctgcgagaggcactaacagaggctctgaaacggtatcctagcaaccggtccctttggaggtcatatatccatatccaaaggaagtctcacagtgctagcaaagcacgaagattttttgatggtgtcacaaggtctactaactctttagagccatggctgtttgcaatccaagcagagcaaatgagaaaaaaactcattgagaatgtccagagggcagatgttggtgaaatacattctacgattcctgaaactgggttaacaaatcggattgtagctctatttgaacacgcagttcagagtgaaaatggtacccattgtccactgctgtggagaatgtatttgaactttctgacttcactaggaaaaaaggaaaaaagtagaggattgttttataaagcacttcaaaactgtccttgggcaaaggtgctctacatggacgcagtagagtacttccctgatcatctgcaagagacgcttgatctaatgactgaaaaagaattgagagtgcgggtacctgtggaagagctggatctactattagaggtttaaaagactgtagaagagtggctaaagtacagaaggtagttctgaagcaaagttagacctgtctcttttcaaacaggagctctgttgagaattgggtactatgtactttttttaaagcttttatataaattgctgtcaaaatggagttctgctagctgcaagtattctggaataaagtactgcattttgcccacaaaaatgcatccatttctttgaagtattgctggctgctacaggaggataccctcttagaaggagcctcctgttgaatgttgcccacatttcttattctgttgtttgaaattacattccctagagttcagcaggaattcagtacgtgccagctatggtttggtgagcagcacaggaaataaacatctgccaaatggatgctccactgttctccacttggcaggcttcagtaatttccttcagcttggtatgtgtgtgtgtgtatatgtaactaccaagtcaaacagccgttaaatctgtacaagcagttacatttgtacatatactgttagtaaaagctaagtctttgcttaagcaggcacctgttttggacttgtatgttttaacagatgaccattttaatataaatatttatgagaaatatacctgaatatttgaaaattcaaaaggaacttgaattatttatttcttaatttaatagaactgtgagtgtattaaaaatgaaagtgtatctataa
//
by
@meso_cacase at
DBCLS
This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
[Full Text]