2024-05-05 00:56:25, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_055103724 6110 bp mRNA linear PRI 11-JUN-2023 DEFINITION PREDICTED: Pan paniscus retina and anterior neural fold homeobox 2 (RAX2), mRNA. ACCESSION XM_055103724 VERSION XM_055103724.1 DBLINK BioProject: PRJNA950461 KEYWORDS RefSeq. SOURCE Pan paniscus (pygmy chimpanzee) ORGANISM Pan paniscus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_073268) annotated using gene prediction method: Gnomon, supported by mRNA evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_029289425.1-RS_2023_05 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.1 Annotation Method :: Best-placed RefSeq; Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 05/31/2023 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..6110 /organism="Pan paniscus" /mol_type="mRNA" /db_xref="taxon:9597" /chromosome="19" /sex="male" /cell_line="PR00251" /cell_type="fibroblast" /dev_stage="adult" gene 1..6110 /gene="RAX2" /note="retina and anterior neural fold homeobox 2; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 5 Proteins" /db_xref="GeneID:100975671" CDS 2645..3199 /gene="RAX2" /codon_start=1 /product="retina and anterior neural fold homeobox protein 2" /protein_id="XP_054959699.1" /db_xref="GeneID:100975671" /translation="
MFLSPGEGPATEGGGLGPGEEAPKKKHRRNRTTFTTYQLHQLERAFEASHYPDVYSREELAAKVHLPEVRVQVWFQNRRAKWRRQERLESGSGAVAAPRLPEAPALPFARPPAMSLPLEPWLGPGPPAVPGLPRLLGPGPGLQASFGPHAFAPTFADGFALEEASLRLLAKEHAQALDRAWPPA"
misc_feature order(2726..2740,2744..2746,2795..2797,2813..2815, 2852..2854,2858..2863,2870..2875,2879..2887,2891..2896) /gene="RAX2" /note="DNA binding site [nucleotide binding]" /db_xref="CDD:238039" misc_feature order(2732..2734,2741..2743,2861..2863,2870..2875, 2882..2884) /gene="RAX2" /note="specific DNA base contacts [nucleotide binding]; other site" /db_xref="CDD:238039" misc_feature 2735..2893 /gene="RAX2" /note="Homeobox domain; Region: Homeobox; pfam00046" /db_xref="CDD:425441" ORIGIN
agtaccctctcctttccatatctagggcactcccctgcctgagccccctggctccttggacttggggggcactggtctctggggcttcccctggagcccgctccacctctcaggcctctgcctctgaaacagtcccacctcgcagcccagaatgggcctgggcaacgcccttgcacctccatacccacaccctgcccctctccagcttccttcctctggaattgctacccccacccttctgtcctccccatccccccagcccttggcctgaccagaccctgtagcctcacctgcctggcacctgcctctggtttctcagctgctcatcattgatgtttgtataaaatgccactgtgtccctgctccacaacctcccatggttccccagcactccatccttcacaccccatgtgtccagaacttgcggctttgcactccatcttccattctcaccaccttccttaacatagcaacccgactggtcgcggtggctcacgcctggaactcctgcactatgggaggccgaggcaagcggatcacctgaggtcaggagttcaagaccaacctggccaacacggcgaaaccccatcttcagtaaaaatacaaaaattagctgggcgtggtggcgcacctgtaatccgagctactcaggaggctgaggcaggagaatcacttgaacctgggaggcagaggttgcagtgagccgagatctcaccactgcactccagcctaggcaacagagtgagactccctctcaaaaaaacaaaaataggccaggcggggtggctcacgcctgtaatgccagcactttgggaggccaaggcaggcggatcacgaggtcaggagttcaagaccagcctggccaaggtggcaaaaccgtgtctctactaaaaaatacaaaaattagccaggcgtggttgcaggtgtctgtaatcccagctactcaggaggctgaggcaggagaattgcttgaacctaggaggcggaggttgcagtgagctgagatcgtgccactgcactccagcctgggcgacagagtaggactctgtctcaaaaaaaaacccaaaaactaaatgaaatatcaacccaccttgcccccacaggcccccctccgtgggttttctccctaggctcgtggccactggccacgatctgcattttaacacagtggttggttgtctgtctgccctgctagaaagtcagccccgtgacttctgtctgttgtggtcactactgctgtgagcagtacctggtagacagtaagtgctcaataaatgtttattgaatggtgaacttctgtttttcttttttgttggtggtggttttggttttttgttttttgttttttttttttgagatggagtttcactctgttgcccaggctggagtgcaatggcatgaccttggctcactgcaagctccaccccaccaggttcaagcaattctcctgcctcagcctcccaagtagctgggatttataggcacccaccaccacgcccggctaatttttgtatttttagtagacagggttttgccatgttggccaggctggtctcaaactcatgatctcaggtgatccgcccgcctcagcctcccaaagtgctggggttacaggcgtgagccactgcgcccggctgtgaatggtgaacttctattcatacctcaagacccagctaaaagggtccctaccccttgtgtccagaggagccaactgcagtgccttcacctctagacctcagcttccccaactgcctctgacatctgtgagttctaagacacctttttctgcccccagcagataaaaatattaacagtgggcattcattaagtgccccctgtatgccaatttctgtgcgatgctctgagaagctgaaatccccccagggtaggtcctagtgtggcagttttacagccagggaaactgaggcccagagagggagaggcccttgccgtcttatggcaaggggccgtggagcctgtaagactatccccccagccacccacttagagccccagccctccatccaccctgccctccctcctggctcagaacagcccaggaccaagtgggaggggccgcctcaattaatcaccttgagctaatcctcccccacgcacccccgacctggctcggctccggcagggccaggccacagcagacacagcaccgggcccgctggggcaggtgtcccgtggaaatcgacggaggggctgccgtgggcggtgagtgcggggtgggcaccggtgggcctgggtaggaggtggtgggggcagagatccccccagggtggagggcttagggcgtgagaagggatcctgccttccttgacgggggggcatccttgaccccccccgccgacacacacacacacaggccgtgacagtcacagagaagggaagagaaaacagggacggtgacacacacagagagaaggaagagcagacagaggcacagcaggagactccccccaagcccgaggaggacagcctggggatgcagagcgcatgccggccccagtggagggaacagatttccccggagccgggaggcaagcctggggctcccctgccctgtccctgccggtagccccccccagccgtctccccgccatctgtcccgctgccgtcccaccaggtgggagccatgttcctgagcccgggcgaggggccggcaaccgagggtgggggtctggggccgggcgaggaggcccccaagaagaagcaccggaggaaccgcaccaccttcaccacctaccagctgcaccagctggagcgggcgttcgaggcctctcactacccggatgtgtacagccgtgaggagctggcagccaaggtgcacctacctgaggtgcgcgtgcaggtgtggttccagaaccgccgggccaagtggcgccgccaggagcggctggagtcaggctcgggtgccgtggcagctccgagactccccgaggccccagcgctgccgttcgcccgccccccggccatgtcgctgcccctggagccctggttgggccctggaccgccggccgtgccaggcctcccccgcctcctgggcccgggcccggggctgcaagcgtccttcgggcctcatgcctttgctcccaccttcgcagatggcttcgccctggaggaggcgtccctgcggctgctggccaaggaacacgcacaggctctggacagggcctggccgccagcctgagcctgccgccctcccgggccccctcctcggcccaacccgagaaccagggacgtgccctggtgacagccaccatgccttggcctaggccgaggtcatggagcaactgtggtcaagccaggccaccaccactggggagcgggaccagagagacaggctgctgggttccctgcccccatcccgtctcccaccccatcgccacccgtcctgctggcagcggactggcccccagtgtcaggcaggaggtgacccaagtattctcaggccaggtgcggggacctcctcccctcctggggcctcagtctcctgtctgttaattgggcgtgggggcctccgaggttcgagggctgcgaggctgtgggtggcgggaccgctgactctgtaagatgagtgtaaatctctctgcttctcctaatccccatcagcagagctgcccactctccaggctcccagtcccctggaaataacaaatagcagcagctcccgcgagcctggtctcctctcaccgtgtgctcgccatgtgagcgctcccctctccgttgtgccctggacctcgggcacagctgtcagcccattctacagagagggaaaccggggcttaggcaggaagccaggtccccaaagtcacacggccaggagtggatggagctgcctttcagacccatcaccggtcctaccgtccggggcacagcgacaggttctggagagagggtgggtcccgggccaggtgctggtgggcctccaggtggaggcgggctgatgctgggtgtgtcgtcatcgtcagcccgttcctcacgtccccacagaccccaggccctgtgcatgtccccagtggaggcatggccagcatctgctctgtccaacccagtcgcatcgctcaagagctctgagcaaggaggctgtcgcggggccgagaacccgctgggactggcaagcacggctggcccagtgcagcaggagggggccctgagccatgggatgggacagtctgggccagcgccaccttccgagacagaagtgcggcaccagggcaggagctgcagtagctaccctccccgtctccagcctgggctccccagatcactcccagatcaccagggcaccccatctctaggcggcacctcacacaccagtcctgtggtccaacgcccagccatcacccaatgtcaccgcacaccaggcagtggggacgcggcagtaagcacaagaaagatttttttttttaaagctaaaccaggccaggtgcggtggctcatgcctgtaatcccagtgctttgggaggctgaggtgggaggattgcttgagacctgcctgggtgacacagcaagaccccatctccacaaacgtttttaaaatgtgccgggtgtagtggtgcacacctgtcatcccagctacccaagaagctgaggcaagaggatcacttgagcccagaaggttgaggctgcagggagctgtgatcacaccgctgcactccagcctgtgcaacagagccagaccctgactcaaaacaaataaaaaacaaatctaaaacaaaagacttcagacagtgataagtgatagggagaaaaaaaaacccaggaaagtcagatgtggagtgtggcaggggctgcaattttaatagggagttctggaggaggggaggctggcgtgaaggtagagaccgggggcgggagggagaaggtctaggggaggagggagctgggcagaggcacaggctgtgcaaaggccctggggcaggaccacgcctagtgcattgaaagaatagcgaggaggcccatgcggaggcccatgcggctggagcagagtgaggagggggaggagggaggtgatggggaggccaggcagggccagtggctgttataactttgatttttaccctcagaaccttggggaacaacaggagggtgggaacggctggcaccacctgcggtgagcgcgagagaaggcgcgctcacacccctgcctgcccagggaggtcgccggggacagcaggtgcgcagtaatccgctccgctccagagtcccctaagaggatgaaggttacggtttccctgagacgggccccgccccgcccatccagcttgtggacagaggaagccggagggtgggtgagcccagtccaaatcccccagggcacccacctaggcatgggtggggctgctgtggcaagggtggggccgagggcatgacccttgggggttctgcaggacgtggggtccatgaggtgatctacccccagcaagaggccccatcactccctaactacgtgtcaccctcagcctcctccaatctggtggactccagccctcgcgatcccgcccatcacagccaggcagggcaggagttgttgggactgcagggaggccagtcctcggtcagaccctgggtcagggtcagggtgccgaaagccgactccagagggtggactgggggcggaggttgagacctgggctccagtggagtggacagaggacttggggggtggggaaggaaggcccaagcccctgggctccagggataggccagtgaggaccacgctgtgactgcggcaggaaggaaggggcagtcccttccctctgattctacttgctgcgctggtggggacgtcggccaggagccctcgggctaccctgcccatgagtgccagcccctgggggatccaaggaccctgagatggagagagccttgggtctgaataccgaagcacctggatccagccacacctgaagccacaccactacccgctccggacatctcctttcttgaagctcataaagcctcttttctgactctgatggcttgagttaggtttgagtcccttgcaaccaagagtggcttagctaggacaaccccctcacccagcaacttgagatttggggccggggcctcgtgagcagtgtcaggaattccaggag
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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