2024-11-01 08:42:26, GGRNA.v2 : RefSeq release 226 (Sep, 2024)
LOCUS XM_051073683 3064 bp mRNA linear VRT 28-FEB-2023 DEFINITION PREDICTED: Lates calcarifer trichohyalin (LOC108877600), transcript variant X1, mRNA. ACCESSION XM_051073683 VERSION XM_051073683.1 DBLINK BioProject: PRJNA345597 KEYWORDS RefSeq. SOURCE Lates calcarifer (barramundi perch) ORGANISM Lates calcarifer Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Carangaria incertae sedis; Centropomidae; Lates. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_066843) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Updated annotation Annotation Name :: GCF_001640805.2-RS_2023_02 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.1 Annotation Method :: Best-placed RefSeq; Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 02/27/2023 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3064 /organism="Lates calcarifer" /mol_type="mRNA" /isolate="ASB-BC8" /db_xref="taxon:8187" /sex="male" /tissue_type="Brain, Kidney" /dev_stage="adult" /linkage_group="LG11" /note="Back-crossed individual (decreased polymorphism)" gene 1..3064 /gene="LOC108877600" /note="trichohyalin; Derived by automated computational analysis using gene prediction method: Gnomon." /db_xref="GeneID:108877600" CDS 1635..2288 /gene="LOC108877600" /codon_start=1 /product="trichohyalin isoform X1" /protein_id="XP_050929640.1" /db_xref="GeneID:108877600" /translation="
MERKHREELKEKDELLNREVNKRRARTQAYVNCLDLLNRQEKALKSAELRGKALESNLRWELTLKEEKHQEEKKYKEEVEEETKRSEDGWRRMESHLREELNHKDELLKKETKKRKARTQAYVDCMNLLSQKEKDLKESEEQTHDALEKSLKLELALKDQREQEDKYKEKVEEETKRAEDELRRMESQFTEELKEKDELLNREINKRRLILRLMLTA"
misc_feature <1638..>2273 /gene="LOC108877600" /note="Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; Region: Smc; COG1196" /db_xref="CDD:440809" ORIGIN
cttcctgttgtctttctctgactctaaggaccaaacaaaagctttttcctgtaagtcattgtctgcttcaacaatcttcctgttacaatgtgggagacaatttaaagaaccaaaccagaagtcttgtttggttcagccctttacctacaaatcacaactagcaaatataactgccaactattttccaaagcatatgttttagatgaacaccctctcccctggagagtcactgattcaattcaagtatgttataaaaatcaacttacagaaaattaaaaccttcttgagacaccacattctgtcaggtggtccaacattttggtccagactgaaatatctcagcaattattgagtggattgccataaaatgtggttcactcatttatctttctcagaggatgaatcctaatgactttggtgaccccagacctttcctctagtgccaccatgaggctcacgattgcagttttgagacaaatgtcttgcactattgagtggattcctatgcaatttggaacagacattcatgtctccctaaagatgggttttaccttgtgtcaccatctggtcaatctgtcagttagaatttgttcagtactttgatttgatccatttgaaaaaacaaattcagacagttagcaaatgttagcatgctaacacacaaaagtaagatgaacatgatcaacattatacctgctcaacatatggatgttagcattttcattgtatgttaccatgctgttgttggcatttagggcaaagtactgctgggcctaagaagctaagagttgtgagcatgactgtagccttgttattctgtatatttcatataatttaaaaccaagactgaaaatgcgatacaaatgtccacaatctcgtatcgacattgcgggaagacctgttaccccctactatcaagagaaaaaaatcagttcacttcttgttaccaataaaggatgttggtgattttgtgcctgaacttatcaaatgaaaatgtagtgtcaacattttctcatagtgcttttaccattttaccattacttaatggatgttcaaaattaatcagatgtgagttgtaaaatgccatcaccagcttagttagaatcttgatgaactagaactagaacagatgatgagaatgttcagttatcacatcatcactctagaactctgacagaatactgtacattctggttgaagcctggatctacagaacaaacctcatttaccttcatgatcttgaaccgagtaccgtctctgtctttggtgaacgaacgtacaactgttatagaacgacgacaactgatattcgacgaccactattttaacttcaacttctacttctacttcaacaactgtgactgctgtctttgctgcaactcaacaacaaatggacccacaaagacacctggcatttggacaaatgccattcactgctcccctttacaggcgagtcgctgctcccctttacagggcaagtcgctgcttccttttacggggcagcacagttcaaccctgctgtagtacagctgcagcagactgtacagggcctaagagatgccctctactccgccatctctgagataaaggctgtgaaggaagagaacaaggctcttaaggagcaagtgaggaagatggagaggaagcacagagaggagctgaaagaaaaagatgagctccttaacagagaagtcaacaaaaggagggctcgtactcaggcttatgtcaactgcctggacctgctcaatagacaagaaaaggcccttaagagtgcagagctgagaggtaaagctctagagtcaaacctgagatgggagctgactctcaaagaagagaaacatcaggaggagaagaaatacaaggaggaagtggaagaggagaccaagaggagtgaggatggttggaggagaatggagagccacctcagagaggagctcaatcataaagatgagctccttaaaaaagaaaccaaaaaaaggaaggctcgcactcaggcttatgttgactgcatgaacctgctcagtcaaaaagaaaaagatctgaaagagagtgaagagcagacacatgacgccttagagaagagtctaaaactggagctggctctgaaagaccagagagagcaggaggacaaatacaaagagaaggtggaggaggagactaagagggctgaggatgaactgaggaggatggagagccagttcacagaggagctgaaagaaaaagatgagctcctaaacagagaaatcaacaaaaggaggctcatactcaggcttatgttgactgcatgaacctgctcagtcaaaaagacaaggagctgaaggagagcaaggagcagacacgtaaagctttagagaagagtctgagcctggagctggctctgaaacaacagagagagcaggaggagaagaagagccaagagaagatgaagaacaaagacaacgaaaagctagagaagaacaaaggaggtgacgatggtcataggaggatagagagccagctgagacaggagctgaaagaaaaagatgagctcctggaaacaggaattaaaaaaaggaaggcctgcactaaggcgtacctggactgcctggtcctgctcagtcagaaagagaaggagcttcaggagagagaagagcagagacgaaacgccttagagaagagtctgagactggaactggctctaaaacaacagagagagcaggaggagaacaagagccaagaaaagatggagaaccaacacgatgaaaagacggaggaggagacagagaggagtgaagctaaagagatgaatgagaaaaaagagaaaccaaagaagaagagggggaagaaaaagaacaggggttagccacaacagaggatccctccctctgaaaccccacctctttccccccatcttaccttacccactcccctcaccctccttcccctttcctaccctctctttccctcttacccctttctcttttacccctttacccctctttcccctctctcccccacctctttccctctccctaaaacaaacccttcatgtcttgtttgtcatgtgtgttaaatatatgttttc
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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