2024-04-24 19:16:23, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_050062534 3900 bp mRNA linear VRT 26-FEB-2023 DEFINITION PREDICTED: Epinephelus moara NRDE-2, necessary for RNA interference, domain containing (nrde2), transcript variant X1, mRNA. ACCESSION XM_050062534 VERSION XM_050062534.1 DBLINK BioProject: PRJNA868339 KEYWORDS RefSeq. SOURCE Epinephelus moara (kelp grouper) ORGANISM Epinephelus moara Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Perciformes; Serranoidei; Serranidae; Epinephelinae; Epinephelini; Epinephelus. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_065519) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Updated annotation Annotation Name :: GCF_006386435.1-RS_2023_02 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.1 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 02/26/2023 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3900 /organism="Epinephelus moara" /mol_type="mRNA" /isolate="mb" /db_xref="taxon:300413" /chromosome="14" /tissue_type="muscle" gene 1..3900 /gene="nrde2" /note="NRDE-2, necessary for RNA interference, domain containing; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins" /db_xref="GeneID:126401339" CDS 37..3672 /gene="nrde2" /codon_start=1 /product="nuclear exosome regulator NRDE2 isoform X1" /protein_id="XP_049918491.1" /db_xref="GeneID:126401339" /translation="
MALFPAFAGVDSNKVEDSSKELDWLTNRSFKTGDALALHSRLFETSERPKEKESSVGRELSSAEEGEEEEGNVPPKKKKKKSEKKRKKKKKHKKKSGRYSDSSRSDSEIIFPSDLKREQDADSPQAAPLACRFSWLDDLQAPTEQPFCVDCKADPANWTYKSLYRGDVARYKRKGNSSLGLDPRRQGVSWAESESNKKQKGGDKKKAADRYFSTVSRQLLRSELPVPTLPTVLECSDVISSTSFLPLGDNEENKRGGMGDRVQTSSVNPLGVYDSSTALWLQGKGQQEQTEQQKQDTETGQSAALLTGRTEEFNRRLREQPTDTQLWLQFIRYQDELSATSFGGEEEQQGGNSADRRKSSNRALLEKKLSIAERAVATNHSCIALQLERLRICQELWEPSLLAKEWKKLVFLHPNSAPLWREYLLFTQSYFSNFTVSKVNSAYGKCLSTLSAVRDGSMVSHPALPGLEEDMLDIFIQQCHFLRQSGHSEKAISLFQAMIDFTFYKPDSVRELSTKQQVEFFEPFWDSGEERVGELGARGWKAWMLQQERGGWLQPNAEEEEEEEEEDEEEVKDRSQPRWTVWLDVETSREAAHWLPWRPDKAKGQSEEDCEDPDRQVLFDDIGPSLICLSTPELRLCLLLHFFSFLGLPVDSVLSAAPCQPGLLLENLSLLTQGNELRHPLTSHNLPEPGVNSVGHMTTLQGTRKCVGLGKQGERFVTNVISMVQAVLPVHHRAALSLSWMQYEKLKVWRCLRGSNKKRLRSQGKRSKRVAKQLLKEPDNRSSLVLWREYAHLEWMLGNFDEARKVFSTATAIGGTKGLKSPALCELCLLWAQLEVEEGAGERGGGQTDVTVSPAVCILTRLAEGTSSSSSSSSQSLSPVSILKARKLYEQALTAGLSALDQNLNNPQANRKAGHEDLLGEKLRLRGLIGCYTLFQYLTMGIQAANAVYSQARGRMEELHSTLTLDKQLNSNEKANLASTDASQSATDSSHSSRHFANRLASECEALAVQKAVLLRYHNSISVFPLATLRQTLTCALPTWPSSAPLWSIYVQVENRYHSAGRARRFFHSVTRDNSSVVPRLFAIVAEQQRKQLVDAAQRSCSHDAALPILPENGLSNRIRGLFESAIATEMGSHCPLLWRMYMHFLVSEGRVDQAKGIFYKALQNIPWAKGLYMDAVQLFPEHLQEFVDLMTEKELRLRLPLEELDILLED"
misc_feature 472..783 /gene="nrde2" /note="MTR4-interacting domain (MID) found in nuclear exosome regulator NRDE2 and similar proteins; Region: NRDE2_MID; cd22200" /db_xref="CDD:412062" misc_feature order(472..498,505..510,520..525,529..531,535..579, 586..594,598..606,640..648,658..663,667..672,679..699, 724..735,754..783) /gene="nrde2" /note="MTR4 binding site [polypeptide binding]; other site" /db_xref="CDD:412062" misc_feature 970..1977 /gene="nrde2" /note="necessary for RNA interference; Region: NRDE-2; pfam08424" /db_xref="CDD:429988" polyA_site 3900 /gene="nrde2" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN
acgtcataatcctgcgactgtttatatgcgaccatcatggctctgtttccagctttcgcaggagtcgacagtaacaaagttgaagattcgtctaaagaattagactggctgaccaacaggagttttaagactggagatgccctcgctctacacagtcgtttgtttgagaccagtgagaggccgaaagagaaggaatcaagtgtaggcagagagctgagctctgcggaggagggggaagaggaggagggtaatgtgccacccaaaaagaagaaaaagaagagtgaaaagaagagaaaaaagaagaaaaaacataaaaagaaaagtgggagatattcggacagcagtaggtctgactctgaaatcattttccccagtgacctcaaaagggagcaagatgcagacagtccccaggctgctccgttagcatgtcgtttctcctggttggatgacctccaggcgccaacagagcagccgttctgtgtggactgtaaagcagaccctgccaactggacgtacaagtccctgtacagaggagacgtagccaggtataagaggaaaggcaactcctccttgggtctggaccctcgcagacagggagtcagctgggcggagtccgagtcaaataagaaacagaaaggcggggacaagaagaaagcagcagacagatacttctctacagtcagtcggcagctgctgaggtccgagctccctgttcctacgttacctaccgttcttgagtgcagcgatgtcatcagctccacctcctttcttccgctgggtgataatgaagagaacaaacgaggagggatgggtgacagagtgcaaacatcatcagtaaatcctctcggagtgtatgactcctccacggccctgtggctgcaggggaaggggcagcaggagcagacagagcagcagaagcaggacaccgagacgggacagagtgcagcgctattgaccggaaggactgaagagtttaacagacggctcagagagcagccaacagacacgcagctgtggttacaattcatacgataccaggatgagctcagtgcaacatcgtttggaggcgaggaggagcaacagggcggcaattcggctgatcgtcgtaagtcctccaaccgagcactcctggagaaaaagctgagcatcgcagagcgtgcagtggccaccaaccacagctgcatagctctgcagctggagaggctcaggatctgccaagagctctgggagccctcacttctggctaaagaatggaagaaactggttttcctccaccccaacagtgcccccctgtggagggagtatctgctgttcacccagagctacttcagcaacttcacggtgtcaaaggtcaactctgcgtatgggaagtgtctaagcacactcagtgcagtgcgtgacggcagcatggtctctcacccggccctgccggggcttgaggaggatatgttggatatcttcatccagcagtgtcatttcctgcgtcagtctggtcactcagagaaggcgatttctctgtttcaggccatgatcgactttacattctacaaacctgacagcgtacgagaactctccaccaagcagcaggtcgagttctttgagccgttctgggacagtggggaggagagggttggagagttgggggccagaggttggaaagcctggatgctccaacaagagcgaggagggtggctacagcccaatgcagaagaagaggaggaggaggaggaagaggatgaggaggaggtaaaggaccggagccagcccagatggacagtctggttggatgtggagacgtctcgtgaagctgctcactggctgccctggaggcctgacaaagccaagggccaatcagaagaggactgtgaggacccagacagacaggtgttgtttgatgacataggtccatccctaatttgtctgtctacaccggagctccggctctgtcttcttctccatttcttttcattcctggggctgcctgtggactctgtgctctctgctgccccctgtcagcctggcctgctgctagagaacctctctctactcactcagggtaatgagctcaggcatcctctgacctcccacaacctacctgaacctggggttaactctgtaggtcacatgaccaccctccagggaacaaggaagtgcgtggggcttgggaagcagggtgagaggtttgtcaccaatgtgatcagtatggtccaagctgtccttcctgtccaccaccgagctgccctgtcactcagctggatgcaatacgagaaactcaaggtctggcgctgcttgcgtggcagcaacaaaaagcgtcttcgttctcagggtaaacgcagcaagcgggttgccaagcaactactcaaggaacccgacaaccgctcatctttggtgctgtggcgggagtacgctcacctggagtggatgctgggcaactttgacgaggctcgcaaagtcttctctacggccacagcgatagggggaaccaaaggtctgaagagccccgccctctgtgagctgtgtctgctgtgggcccagctggaggtggaggaaggggccggtgagcgagggggaggacaaaccgatgtcaccgtgtccccagctgtgtgtatactaaccaggctagcagaaggaacttcttcatcgtcctcttcatcctcccagtcactctctccggtttccatcctgaaagccaggaagttgtatgaacaggctctgactgctggcttgtcagccctggaccaaaacctcaacaaccctcaggccaacagaaaagcaggccatgaggacctgctcggagagaagctgaggctgcgaggcctaataggctgctacactctgttccagtacctcacaatgggcatccaagcagctaatgctgtctacagccaggctagagggaggatggaggagctgcacagcacgctaacacttgacaagcagcttaacagtaatgagaaagctaaccttgctagcacagatgctagccagtctgcaactgattctagccatagcagcaggcactttgctaacaggctagcttctgaatgtgaggcattagcagtgcagaaggcagtgctgctcaggtaccacaacagcatcagtgtgtttccactggcaacactaagacagacactgacctgtgccctccccacctggcccagcagcgcccctctttggagcatatatgtacaggtggagaaccgttaccatagtgctggccgggcgcgtcgcttttttcactctgtaaccagggacaacagcagtgtggtgccgcgcctctttgccattgttgctgaacaacaaaggaagcagctggtggacgctgctcagaggtcttgtagccatgatgctgccttgcccatcctgccagagaatggcctcagcaaccgtatccgtggactgtttgaaagtgccatagcaacagagatgggttctcactgtcctttactttggaggatgtacatgcacttcctggtgtcagaggggagggtagatcaagccaaagggatcttctacaaggccttacagaatattccctgggctaagggtttgtacatggacgcagtgcagctgttccctgaacatctgcaggagttcgtagatctgatgacggagaaagaactccgactcagactgcccttagaagaactggatatactactggaggactgaacacacacagatatcattcaagaacttgtgtttgctttattgccaacttgctagtatcagcacacttgatggcagagcaggagaacgcaaaaacttgggacgcttacacacacatatctgcagtattaaacagtgaagttgcagtgatcatatgggttcagggccattctttctacataatgtctttattttcacagcaaaacactagttaataaaaatgtgattctc
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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