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2024-03-28 23:36:08, GGRNA.v2 : RefSeq release 222 (Jan, 2024)

LOCUS       XM_049898912            3322 bp    mRNA    linear   MAM 27-FEB-2023
DEFINITION  PREDICTED: Elephas maximus indicus NRDE-2, necessary for RNA
            interference, domain containing (NRDE2), transcript variant X4,
            mRNA.
ACCESSION   XM_049898912
VERSION     XM_049898912.1
DBLINK      BioProject: PRJNA861314
KEYWORDS    RefSeq.
SOURCE      Elephas maximus indicus
  ORGANISM  Elephas maximus indicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Afrotheria; Proboscidea; Elephantidae; Elephas.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_064828) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_024166365.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Gnomon; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/26/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3322
                     /organism="Elephas maximus indicus"
                     /mol_type="mRNA"
                     /isolate="mEleMax1"
                     /sub_species="indicus"
                     /db_xref="taxon:99487"
                     /chromosome="10"
                     /sex="male"
                     /cell_type="fibroblast"
                     /tissue_type="fibroblast cells from skin"
                     /dev_stage="adult"
                     /country="USA: San Diego Zoo"
                     /lat_lon="32.7353 N 117.1490 W"
                     /collection_date="2016"
                     /collected_by="San Diego Zoo"
     gene            1..3322
                     /gene="NRDE2"
                     /note="NRDE-2, necessary for RNA interference, domain
                     containing; Derived by automated computational analysis
                     using gene prediction method: Gnomon."
                     /db_xref="GeneID:126084353"
     CDS             46..3231
                     /gene="NRDE2"
                     /codon_start=1
                     /product="nuclear exosome regulator NRDE2 isoform X4"
                     /protein_id="XP_049754869.1"
                     /db_xref="GeneID:126084353"
                     /translation="
MALFPAFAGVSEAADSGSSRKELDWLSNPSFCVGTIIPPSQQLEEAPDLVPEGPPLTRSPLKSEPSDESDTNKKLKQTSRKKKKEKKKKRRHQHHKKTKRKHGQSSGSTSEPDTDAERDKSSRSISKRESEKPNQDNHAAADIGHRCVWLEDIQAATGETFRTDKKPDPANWEYKSLYRGDIARYKRKGDSCLGINPKKQCISWEGAPMEKKNSHKHVERYFTKKNVGLMSIDGAAVSSKTEPPSSEAASFIPVKDSEDVAPSVTTWMNPLGIYDHSTTQWLQGQGPLEQETKLPDSQPDRENAVLKAKVEEFNRKIRENPQDIELWMAFVAFQDEVMRRPGLYALDEGEQEKRKRSLKLTLEKKLAILERAIESNPSSVDLKLAKLKLCTEFWEPATLVKEWQKLIFLHPNNTALWQKYLLFCQSQFSTFSVSKIHNLYGKCLSTLSSVKDGSILSHPVLPGTEEAMFALFLQQCHFLRQAGHSEKAVSLFQAMIDFTFFKPDSVKDLPTKGQVEFFEPFWDSGEPRAGEKGARGWRAWMHQQERGGWVVINPDEDDDEPEEDDQEIRDKTLPRWQIWLGAERSRDQRHWQPWRPDKTKKQTEEDCEDPERQVLFDDIGQSLIRLSSRDLQFQLVEAFLQFLGVPSGFAPPVSCLYLAMDENSVFVHRLSDEKPLTCSTPSFAGVGCVGRMDRLGCQRWSRGHNREGEEFIRNIFHLVMPLFSGEEKSRLCFSWLRHETAKVIWCLQTENKKKLKSQGRNCKKLAKSLLKEPENCSSLCLWRQYAHLEWLLGNTEDARKVFDTALSMVGARELKDAALCELSLLYAELEVELLSDLRGAATSRAVHVLTKLTESGPYGPYSGQVLAVHILKARKAYERVLQDCLDESCIPDPAPTDSFNCLVSLVRCFMLFQYLTMGIDAAVQIYEQVFTKLKGSVSREGTGLEHSGSPRSLASALEAVTLMYTSLLQFHVKVSVYPLTPLREALSEALKLYPANQALWRSYVQIQNKSHSASKTRRFFDAITRSTKSLEPWLFAIEAEKMRKRLVETVQRRWRSTCHNP"
     misc_feature    523..813
                     /gene="NRDE2"
                     /note="MTR4-interacting domain (MID) found in nuclear
                     exosome regulator NRDE2 and similar proteins; Region:
                     NRDE2_MID; cd22200"
                     /db_xref="CDD:412062"
     misc_feature    order(523..549,556..561,571..576,580..582,586..630,
                     637..645,649..657,679..687,697..702,706..711,718..738,
                     763..774,784..813)
                     /gene="NRDE2"
                     /note="MTR4 binding site [polypeptide binding]; other
                     site"
                     /db_xref="CDD:412062"
     misc_feature    979..1977
                     /gene="NRDE2"
                     /note="necessary for RNA interference; Region: NRDE-2;
                     pfam08424"
                     /db_xref="CDD:429988"
ORIGIN      
gaggcgccatttctgtagaggggagcggcggcgcagcctgcgaacatggcgttgttcccagcctttgcgggtgttagtgaggccgccgacagcgggagctccaggaaagaattagactggctgagcaacccaagcttctgtgttggaaccataataccaccgagccagcagctggaagaagccccagaccttgttcctgaggggccaccactgaccaggagtcctttgaaatcagagccttcagatgaaagtgacactaacaaaaaactcaaacaaacaagcagaaaaaagaagaaagagaaaaagaagaaaaggagacatcagcaccacaagaaaaccaagagaaaacatgggcagtcgagtggcagcacatctgagccagatactgacgctgaaagggacaaatcttctagaagcatcagtaaaagggaatctgagaaaccaaatcaagataatcatgctgctgcagatattggacatcggtgtgtttggctggaggacattcaggctgcgacgggagaaaccttccgaacagataagaaaccagatcctgcaaactgggagtataagtctctctaccggggggatatagcaagatacaagaggaaaggagactcctgcctgggcattaaccctaagaagcagtgtatatcttgggaaggggctcccatggaaaagaagaattcacacaagcatgttgaacgctattttaccaagaagaacgtgggattgatgagcattgatggagctgctgttagcagtaaaaccgaacctccctcatctgaggcggcctcgtttataccagtgaaggactcggaggatgtggctccttccgtcaccacctggatgaaccctctggggatttacgaccattccaccacgcagtggttacaaggacagggccctttggagcaagagacaaagctgccagactcacagccagacagagagaatgctgttctcaaggccaaggtggaggaatttaacaggaagattcgggagaatcctcaggacattgagctgtggatggcatttgttgcttttcaggacgaggtcatgagaaggccaggcctgtatgcccttgacgaaggagagcaggagaagcgaaagcggtccctgaagctcaccctggagaagaagctggctatcctggagcgggccatcgagagcaacccaagcagcgtcgacctgaaactcgccaagctgaagctctgcacggagttctgggagcccgccactctggtcaaagagtggcagaagctgatattcttgcaccccaacaatacagccctttggcagaagtaccttctattttgccagagtcaatttagcaccttctcggtatcaaaaattcacaatctttatggaaaatgcttgagtactttgtcttccgttaaggacggcagcatcttatctcaccccgtgttgcctggcaccgaggaggccatgtttgctctctttcttcagcagtgccactttctgcggcaggctggccactcggagaaggcagtctctttgttccaggccatgattgacttcaccttcttcaaacctgacagtgtgaaagatctgcctaccaaaggacaggtggaattctttgagcccttttgggacagcggcgagccccgggctggggagaagggggcccgaggctggagagcatggatgcaccagcaggagcggggcggctgggtggtcatcaacccagatgaggatgacgatgagccggaagaggatgaccaggaaataagagataagaccctgcccaggtggcagatctggcttggtgctgagcgttcccgagaccagaggcattggcaaccttggcgccctgataagaccaagaagcaaaccgaggaagattgtgaggatccagagaggcaggtgttgtttgatgatattggacagtctctgatcagactctcaagcagagatctccagtttcagctggttgaagccttcctgcagttcttgggtgtgccttctggctttgcgcccccagtctcctgcctttatctggccatggatgagaacagcgtcttcgttcacagactttctgatgaaaagccattgacttgttccaccccttcctttgccggcgtgggctgtgttggccgcatggaccgcttgggctgtcagcgctggagcagggggcacaaccgagagggcgaggagtttatccgtaacatcttccacctggtgatgcctttgttctcaggcgaggagaagtctcggctctgcttctcctggttacggcacgagacggcaaaggtcatttggtgtctgcaaactgaaaacaagaagaaattaaagtcacaaggaaggaactgcaaaaaactagccaagagtctcctgaaggagccagaaaactgcagcagtctgtgcctctggaggcagtatgcacatctggagtggctgctgggcaatacagaggatgccaggaaggtttttgatacggcactcagcatggtgggagccagggagctgaaggacgctgcgctctgtgagctcagtcttctgtatgcggaactggaggtggagctgctgtcggacttgagaggggccgccacgtccagagctgtccatgtactaaccaaactgaccgagagcggtccctacgggccctactctgggcaggtcttggctgttcacattctgaaggcccggaaggcttacgagcgagtgcttcaggactgcttggacgagagctgcatcccagacccagctcccaccgactcctttaactgcctggtcagcttggtcagatgctttatgctcttccagtacttgaccatgggcatcgatgctgctgtgcagatatacgagcaggtatttacaaaactgaagggctctgtgtcccgtgaaggcactggcctggagcacagcggcagcccccggagcctggccagcgctctggaagctgtcacactgatgtacacgagtctgctccagttccacgtgaaagttagcgtttaccctctgacccctttgcgagaggcactctctgaggctttgaagttgtatccggccaaccaagctctttggaggtcatatgttcaaattcaaaacaagtcccacagtgccagcaagaccagaagattctttgatgcgatcaccaggtccaccaaatccttggagccttggttgtttgcaattgaagccgagaaaatgaggaaaagactggtggaaactgttcagagaaggtggagaagtacatgccacaatccctgagagcggcttaacaaaccgaatcaaagccctgtttgaacatgcgatccagagtgacaacggcagccagtgccccttgctgtggagaatgtac
//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]