2024-03-28 23:36:08, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_049898912 3322 bp mRNA linear MAM 27-FEB-2023 DEFINITION PREDICTED: Elephas maximus indicus NRDE-2, necessary for RNA interference, domain containing (NRDE2), transcript variant X4, mRNA. ACCESSION XM_049898912 VERSION XM_049898912.1 DBLINK BioProject: PRJNA861314 KEYWORDS RefSeq. SOURCE Elephas maximus indicus ORGANISM Elephas maximus indicus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Afrotheria; Proboscidea; Elephantidae; Elephas. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_064828) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Updated annotation Annotation Name :: GCF_024166365.1-RS_2023_02 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.1 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 02/26/2023 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3322 /organism="Elephas maximus indicus" /mol_type="mRNA" /isolate="mEleMax1" /sub_species="indicus" /db_xref="taxon:99487" /chromosome="10" /sex="male" /cell_type="fibroblast" /tissue_type="fibroblast cells from skin" /dev_stage="adult" /country="USA: San Diego Zoo" /lat_lon="32.7353 N 117.1490 W" /collection_date="2016" /collected_by="San Diego Zoo" gene 1..3322 /gene="NRDE2" /note="NRDE-2, necessary for RNA interference, domain containing; Derived by automated computational analysis using gene prediction method: Gnomon." /db_xref="GeneID:126084353" CDS 46..3231 /gene="NRDE2" /codon_start=1 /product="nuclear exosome regulator NRDE2 isoform X4" /protein_id="XP_049754869.1" /db_xref="GeneID:126084353" /translation="
MALFPAFAGVSEAADSGSSRKELDWLSNPSFCVGTIIPPSQQLEEAPDLVPEGPPLTRSPLKSEPSDESDTNKKLKQTSRKKKKEKKKKRRHQHHKKTKRKHGQSSGSTSEPDTDAERDKSSRSISKRESEKPNQDNHAAADIGHRCVWLEDIQAATGETFRTDKKPDPANWEYKSLYRGDIARYKRKGDSCLGINPKKQCISWEGAPMEKKNSHKHVERYFTKKNVGLMSIDGAAVSSKTEPPSSEAASFIPVKDSEDVAPSVTTWMNPLGIYDHSTTQWLQGQGPLEQETKLPDSQPDRENAVLKAKVEEFNRKIRENPQDIELWMAFVAFQDEVMRRPGLYALDEGEQEKRKRSLKLTLEKKLAILERAIESNPSSVDLKLAKLKLCTEFWEPATLVKEWQKLIFLHPNNTALWQKYLLFCQSQFSTFSVSKIHNLYGKCLSTLSSVKDGSILSHPVLPGTEEAMFALFLQQCHFLRQAGHSEKAVSLFQAMIDFTFFKPDSVKDLPTKGQVEFFEPFWDSGEPRAGEKGARGWRAWMHQQERGGWVVINPDEDDDEPEEDDQEIRDKTLPRWQIWLGAERSRDQRHWQPWRPDKTKKQTEEDCEDPERQVLFDDIGQSLIRLSSRDLQFQLVEAFLQFLGVPSGFAPPVSCLYLAMDENSVFVHRLSDEKPLTCSTPSFAGVGCVGRMDRLGCQRWSRGHNREGEEFIRNIFHLVMPLFSGEEKSRLCFSWLRHETAKVIWCLQTENKKKLKSQGRNCKKLAKSLLKEPENCSSLCLWRQYAHLEWLLGNTEDARKVFDTALSMVGARELKDAALCELSLLYAELEVELLSDLRGAATSRAVHVLTKLTESGPYGPYSGQVLAVHILKARKAYERVLQDCLDESCIPDPAPTDSFNCLVSLVRCFMLFQYLTMGIDAAVQIYEQVFTKLKGSVSREGTGLEHSGSPRSLASALEAVTLMYTSLLQFHVKVSVYPLTPLREALSEALKLYPANQALWRSYVQIQNKSHSASKTRRFFDAITRSTKSLEPWLFAIEAEKMRKRLVETVQRRWRSTCHNP"
misc_feature 523..813 /gene="NRDE2" /note="MTR4-interacting domain (MID) found in nuclear exosome regulator NRDE2 and similar proteins; Region: NRDE2_MID; cd22200" /db_xref="CDD:412062" misc_feature order(523..549,556..561,571..576,580..582,586..630, 637..645,649..657,679..687,697..702,706..711,718..738, 763..774,784..813) /gene="NRDE2" /note="MTR4 binding site [polypeptide binding]; other site" /db_xref="CDD:412062" misc_feature 979..1977 /gene="NRDE2" /note="necessary for RNA interference; Region: NRDE-2; pfam08424" /db_xref="CDD:429988" ORIGIN
gaggcgccatttctgtagaggggagcggcggcgcagcctgcgaacatggcgttgttcccagcctttgcgggtgttagtgaggccgccgacagcgggagctccaggaaagaattagactggctgagcaacccaagcttctgtgttggaaccataataccaccgagccagcagctggaagaagccccagaccttgttcctgaggggccaccactgaccaggagtcctttgaaatcagagccttcagatgaaagtgacactaacaaaaaactcaaacaaacaagcagaaaaaagaagaaagagaaaaagaagaaaaggagacatcagcaccacaagaaaaccaagagaaaacatgggcagtcgagtggcagcacatctgagccagatactgacgctgaaagggacaaatcttctagaagcatcagtaaaagggaatctgagaaaccaaatcaagataatcatgctgctgcagatattggacatcggtgtgtttggctggaggacattcaggctgcgacgggagaaaccttccgaacagataagaaaccagatcctgcaaactgggagtataagtctctctaccggggggatatagcaagatacaagaggaaaggagactcctgcctgggcattaaccctaagaagcagtgtatatcttgggaaggggctcccatggaaaagaagaattcacacaagcatgttgaacgctattttaccaagaagaacgtgggattgatgagcattgatggagctgctgttagcagtaaaaccgaacctccctcatctgaggcggcctcgtttataccagtgaaggactcggaggatgtggctccttccgtcaccacctggatgaaccctctggggatttacgaccattccaccacgcagtggttacaaggacagggccctttggagcaagagacaaagctgccagactcacagccagacagagagaatgctgttctcaaggccaaggtggaggaatttaacaggaagattcgggagaatcctcaggacattgagctgtggatggcatttgttgcttttcaggacgaggtcatgagaaggccaggcctgtatgcccttgacgaaggagagcaggagaagcgaaagcggtccctgaagctcaccctggagaagaagctggctatcctggagcgggccatcgagagcaacccaagcagcgtcgacctgaaactcgccaagctgaagctctgcacggagttctgggagcccgccactctggtcaaagagtggcagaagctgatattcttgcaccccaacaatacagccctttggcagaagtaccttctattttgccagagtcaatttagcaccttctcggtatcaaaaattcacaatctttatggaaaatgcttgagtactttgtcttccgttaaggacggcagcatcttatctcaccccgtgttgcctggcaccgaggaggccatgtttgctctctttcttcagcagtgccactttctgcggcaggctggccactcggagaaggcagtctctttgttccaggccatgattgacttcaccttcttcaaacctgacagtgtgaaagatctgcctaccaaaggacaggtggaattctttgagcccttttgggacagcggcgagccccgggctggggagaagggggcccgaggctggagagcatggatgcaccagcaggagcggggcggctgggtggtcatcaacccagatgaggatgacgatgagccggaagaggatgaccaggaaataagagataagaccctgcccaggtggcagatctggcttggtgctgagcgttcccgagaccagaggcattggcaaccttggcgccctgataagaccaagaagcaaaccgaggaagattgtgaggatccagagaggcaggtgttgtttgatgatattggacagtctctgatcagactctcaagcagagatctccagtttcagctggttgaagccttcctgcagttcttgggtgtgccttctggctttgcgcccccagtctcctgcctttatctggccatggatgagaacagcgtcttcgttcacagactttctgatgaaaagccattgacttgttccaccccttcctttgccggcgtgggctgtgttggccgcatggaccgcttgggctgtcagcgctggagcagggggcacaaccgagagggcgaggagtttatccgtaacatcttccacctggtgatgcctttgttctcaggcgaggagaagtctcggctctgcttctcctggttacggcacgagacggcaaaggtcatttggtgtctgcaaactgaaaacaagaagaaattaaagtcacaaggaaggaactgcaaaaaactagccaagagtctcctgaaggagccagaaaactgcagcagtctgtgcctctggaggcagtatgcacatctggagtggctgctgggcaatacagaggatgccaggaaggtttttgatacggcactcagcatggtgggagccagggagctgaaggacgctgcgctctgtgagctcagtcttctgtatgcggaactggaggtggagctgctgtcggacttgagaggggccgccacgtccagagctgtccatgtactaaccaaactgaccgagagcggtccctacgggccctactctgggcaggtcttggctgttcacattctgaaggcccggaaggcttacgagcgagtgcttcaggactgcttggacgagagctgcatcccagacccagctcccaccgactcctttaactgcctggtcagcttggtcagatgctttatgctcttccagtacttgaccatgggcatcgatgctgctgtgcagatatacgagcaggtatttacaaaactgaagggctctgtgtcccgtgaaggcactggcctggagcacagcggcagcccccggagcctggccagcgctctggaagctgtcacactgatgtacacgagtctgctccagttccacgtgaaagttagcgtttaccctctgacccctttgcgagaggcactctctgaggctttgaagttgtatccggccaaccaagctctttggaggtcatatgttcaaattcaaaacaagtcccacagtgccagcaagaccagaagattctttgatgcgatcaccaggtccaccaaatccttggagccttggttgtttgcaattgaagccgagaaaatgaggaaaagactggtggaaactgttcagagaaggtggagaagtacatgccacaatccctgagagcggcttaacaaaccgaatcaaagccctgtttgaacatgcgatccagagtgacaacggcagccagtgccccttgctgtggagaatgtac
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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