2024-04-18 14:44:46, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_049612329 12009 bp mRNA linear MAM 28-FEB-2023 DEFINITION PREDICTED: Panthera uncia NRDE-2, necessary for RNA interference, domain containing (NRDE2), transcript variant X2, mRNA. ACCESSION XM_049612329 VERSION XM_049612329.1 DBLINK BioProject: PRJNA861302 KEYWORDS RefSeq. SOURCE Panthera uncia (snow leopard) ORGANISM Panthera uncia Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Feliformia; Felidae; Pantherinae; Panthera. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_026057582) annotated using gene prediction method: Gnomon, supported by mRNA evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Updated annotation Annotation Name :: GCF_023721935.1-RS_2023_02 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.1 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 02/27/2023 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..12009 /organism="Panthera uncia" /mol_type="mRNA" /isolate="11264" /db_xref="taxon:29064" /chromosome="B3" /map="unlocalized" /sex="female" /tissue_type="Tissue Culture" /dev_stage="adult" /collection_date="2000-05-31" gene 1..12009 /gene="NRDE2" /note="NRDE-2, necessary for RNA interference, domain containing; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 3 Proteins" /db_xref="GeneID:125909258" CDS 206..3700 /gene="NRDE2" /codon_start=1 /product="nuclear exosome regulator NRDE2" /protein_id="XP_049468286.1" /db_xref="GeneID:125909258" /translation="
MALFPAFAGIGETSGSGSARKELDWLSNPSFCAGAITSLSQQTEGATALVSEGSPLTRSPLKSEPSDESDTNKKPKQTSRKKKKEKKKKRKHHHKKTRRKHGQSSSSGSEPDSDSEKDKTSRSIRDGKKESEKPNREGNAVADTGHHCIWLEDVQALTGETFRTDKKPDPANWEYKSLYRGDIARYKRKGDSCLGINPKKQCISWEGAATEKKHSHKHVERYFTKKSVGLMNIDGVAVGGKTEPPSSEPVSFIPVKGSDDVAPPVTTWLNPLGIYDQSTTQWLQGQGPSEQESKQPDSQTDREHALLKAKVEEFNRRVRENPWDIQLWMAFVAFQDEVMKSPGLYAIEEGEQEKRKRSLRLVLEKKLAILERAIESNQSSVDLKLAKLKLCSEFWEPSALAKEWQKLIFLHPNDTALWQKYLLFCQSQFSTFTVSKIHGLYGKCLSTLSAVKDGSILSHPALPGTEDAMFGLFLQQCHFLRQAGHSEKAVSLFQAMVDFTFFKPDSVKDLPTKGQVEFFEPFWDSGEPRVGEKGARGWRAWMHQQERGGWVVISPDDDDDEPEDEDQEIREKSLPRWQIWLATERSRDQRHWRPWRPDKTKKQTEEDCEDPERQVLFDDIAQSMIRLSSQDLQFQLVAAFLQFLGVPSGLSPPASCLYLAVDENSIFDDGLCDEMPLTFLNLSSSGVSCVGCSDPLGRRRWTRGHNREGEEFIRNIFHLVMPLFSGRERSQLCFSWLRYEIEKVIWCLHTKNKKRLKSQGKNCKKLAKNLLKEPENRNSFCLWKQYAHLEWLLGNTEDARKVFDTALSMAGGRDLRDRELCELGLLYAGLEAELLPDPRGAATARAVHVLTRLTEQGPCGPYSGQALAVHILKARKAYEHALQDCLGDSCVSAPAPSDSFDRLTSLVKCFMLFQYLTVGIDAAVRVYEQVLAKLKGSVPPGGSGPEDGARAQGPHGALEAVTLMHTSLLRFHTKVSLYPLAPLRQALSEALRLYPGNQVLWRAYVQIQSRSHAASETRRFFDAVTRSTKLLEPWLFAIEAEKMRKRLVESVQRVDGREVHATIPETGLTHRIRALFENALRSDNGSQCPLLWRMYLNFLVSLGNKERSKGVFYKALQNCPWAKVLYLDAVEHFPEEMQEVLDLMTEKELRVRLPVEELALLLED"
misc_feature 686..973 /gene="NRDE2" /note="MTR4-interacting domain (MID) found in nuclear exosome regulator NRDE2 and similar proteins; Region: NRDE2_MID; cd22200" /db_xref="CDD:412062" misc_feature order(686..712,719..724,734..739,743..745,749..793, 800..808,812..820,842..850,860..865,869..874,881..901, 926..937,947..973) /gene="NRDE2" /note="MTR4 binding site [polypeptide binding]; other site" /db_xref="CDD:412062" misc_feature 1142..2140 /gene="NRDE2" /note="necessary for RNA interference; Region: NRDE-2; pfam08424" /db_xref="CDD:429988" polyA_site 12009 /gene="NRDE2" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN
gtatcaattacggcgatgtggctccgccccaccccgccccgccccgcccctcctcgccctgccaggtccccgggtcaagccccagggagtgcgagtgggaaaaaccacacttcccagagtgcaccgcaaccgcgaaggcctcactaccggcgtccgctcgccggcgccatttctggagaggggaacggcggtgcggcctgcagtcatggcgctgttcccggcctttgcaggcattggtgagacttccggtagcggcagcgccaggaaagaattagactggctgagcaacccaagcttttgtgctggagccataacctctctgagccaacaaactgaaggggccacagccctggtttctgaagggtcacctctgacaaggagccctctgaaatcagagccttcggatgaaagtgacactaacaaaaagcccaaacaaacaagcagaaaaaagaagaaagagaaaaagaagaaaaggaagcatcaccacaagaaaactaggagaaaacacgggcagtccagtagcagtgggtctgagccagatagtgattctgaaaaggataaaacttccagaagcattagagacggtaaaaaggaatccgagaaaccaaaccgagaagggaacgccgtcgctgatactgggcaccactgcatctggcttgaggacgttcaggctctcacaggggaaaccttcagaacagataagaaaccggaccctgcaaactgggagtacaagtctctctaccgaggagatatagcaagatacaagaggaaaggagactcctgccttggcattaaccctaagaagcagtgcatatcctgggagggggctgccacagaaaagaagcactcacacaagcatgtcgagcgctatttcacgaagaagagcgtgggactgatgaacattgacggagtcgccgttggcggtaaaaccgaacctccctcatctgagccggtctcatttatcccagtgaagggctccgatgatgtggctcctcctgttacgacctggttgaaccctctggggatttatgatcagtccaccacgcagtggttacaaggacagggtccttcagagcaagaatcaaagcagccagactcacagacagacagagagcatgccctgctcaaggccaaggtggaggagtttaacaggagagttcgggagaatccctgggatattcagctgtggatggcatttgttgcttttcaggacgaggtcatgaagagccctggcctgtatgccatcgaggaaggagagcaggaaaagcggaagcggtctctgaggctcgttctggagaagaagctggccatcctggaacgggccatcgaaagcaaccagagcagcgtggacctgaaactcgccaagctgaagctctgctccgagttctgggagccctccgccctggccaaagagtggcagaaactgatctttctgcatcccaacgatacagccctgtggcagaaataccttttattttgccagagccagtttagcacctttacggtgtcaaaaattcacggtctgtacggcaagtgcttgagcaccttgtctgccgtgaaggatggcagcatcttatcgcaccccgccctgccggggaccgaggacgccatgtttggtctctttcttcagcaatgccacttcctgcggcaggctggtcactctgagaaggcggtctctctgttccaggccatggtcgacttcaccttcttcaaacccgacagtgtgaaagacctgcccaccaaaggacaggtggaattctttgagcccttctgggacagtggggagccccgggttggcgagaagggcgcccgaggctggagagcgtggatgcaccagcaggagcggggcggctgggtggtcatcagtccagatgatgatgatgatgagccagaagatgaggaccaggaaataagagagaagagtctgcccaggtggcagatctggcttgccaccgagcggtcccgagaccagaggcactggcggccgtggcgccctgataagaccaagaagcaaaccgaggaagactgtgaggatccagagagacaggtgctgtttgatgacattgcccagtctatgatccgtctttccagccaggatcttcagtttcagctggttgcggcctttctgcagttcctgggcgtgccttctggcctcagccctccagcctcctgcctctacctggccgtggatgagaacagcatcttcgatgacgggctttgtgacgaaatgccactgacttttctcaacctttcctcttccggtgtcagctgtgttggctgctcagacccactgggccgccggcgctggacccggggtcacaatcgagagggcgaggagttcatccgcaacatctttcaccttgtgatgcctttgttttcaggccgggagaggtctcagctctgcttctcttggttacggtacgagatcgagaaggtcatttggtgtctgcacactaaaaacaagaagaggctaaagtcacagggaaagaactgcaagaaactagccaaaaatctcctgaaggagccagaaaaccgcaacagtttctgcctctggaagcagtacgcacatctggagtggctgcttggcaacaccgaggacgccaggaaggtgttcgatacggcgctcagcatggcggggggcagagacctgagggaccgtgagctgtgtgagctcggcctcctctacgccgggctggaggcggagctgttgccggacccgagaggggccgccacggcgcgagccgttcacgtactgaccaggctgacggagcaggggccctgcgggccctactccgggcaggcgctggccgttcacatcttgaaagctcggaaggcgtacgaacacgcgctgcaggactgtttgggcgacagctgtgtgtccgctccggctcccagcgactccttcgaccgcctgactagcctggtgaaatgcttcatgctctttcagtacttgaccgtagggatcgatgcggccgtgcgggtgtacgagcaggtgctcgcaaaactgaagggctctgttcccccagggggctccggcccggaggacggtgcccgcgcccagggcccccacggcgcgctggaggccgtgacgctgatgcacacgagcctgctcaggttccacacgaaagtcagcctttaccccctggctcctctgcgccaggctctctccgaggcgttaaggttgtacccaggcaaccaggtgctttggcgggcgtacgtgcagattcagagcaggtcccacgcagccagtgagaccagaagatttttcgacgcggtcaccaggtctaccaaactcttggagccttggttgtttgcgatcgaggccgagaaaatgaggaagagactggtggagagtgttcagagggtagatggtagagaggtccacgccacaattcccgagaccggcttgacacatcgcatcagagccctgtttgaaaatgcgttgcggagcgacaacggcagccagtgccccttactgtggaggatgtacctgaattttttggtttccttaggaaacaaagaaaggagcaaaggcgtgttctacaaagcacttcagaattgtccctgggcgaaggtgctgtacctggacgctgtggagcacttccccgaagagatgcaggaggtcctggacctgatgacggagaaggagctccgggtgcgcctgcccgtcgaggagctggcgcttctgctggaggactagaccaggagggaacgggccctgccttccgggcctctcgcctgccccccccccccaacccccccaccggagccgggatgcgcaggacggggacgcatgcgtagaagcccgtgtcatggaagagaatcttgcctagaaaccagcggacactggtgggggagaagggcggcgggtcagggcacccgaggaaggtggctggccagccaagtggatgcttgcctcgatctgccccgcttccttcgcggcttcaagactgaactgttcagagaggggagaagtgccggaaatggatgaagaaagggagccacgttctgggccacagctcccgttacaccaggaaacttcgcggcaacagagcacacgtccagttcatctacctacactgaggagacagcatgcgttctggctaaatggaaatctccccatttactgcatttattgtctcgcaacacttgccaaaagtaaaacaacccacgcaacatgatgtgataaaaccacaatctcagcactaagtttctatctggttatgaccctcaggatatttcaaatggtgcagcaaaaaagaaagtgaacaaaaagacaaagcaaagaggtaaaacggtaacacttggtgaactgaggtgatgggtatgtgggcatttactattgttgcaacttttctgaagacttcaaatttccccaaatacaaagttggtgcaaaatttaaaaactctctttgaattgaagttaccgacaaagacactaacctagttctacagatgccaacgatacgcagttcagtgcaggcaccagcgtgaaaaggccccacacacgccgtccctacctgactgtggcacttacccctacctgacagaaacccaggtcctcacatacaaagcaggctggacccacactcagtgctgccgagcctcgccctaattctggtcgtctgggaagaaacgtcctcacacacacacaactaagaggtacagtccagcccaggttctcaccttgatgtcggccccagagaggtcatctttagccatgatcaagtcgtccagggtcacatcatcggccagcgtcatcctgctcgtgtggatctgaaagatgcgcctcttggtcttttcatcgggcagggggaactcaattttcctgtcaatgcggcctgcgggtataaaaggtttccagtcacacccctgtggctccccccaggctctgctgtggctcggggagcctgtctcctcacacctgcagtttcagagggaaacttcccttgtgggaagggtccaaatcttgaaaagtgaacactgctctttgtaaatatccacgtgtgaaatcatcccgtttaaaagaaatcctctctcctctggtaccttcagaaacacacaaactagccactgctgcttttggtgctacccgaatgcgaaattaactggagctaccataggagctatttcttcagaaaaaagaatattcattacgggaaagagaaacggtcacaacttaagactgcgatggaaagggccacactacacctactacatcatgttcttagccattacctcagtggaacgcagcttttgggaagttattctacacttcagtaatgtatttgccttgatgtgtatcatttttaaatcccctgaaagtgcacttaaacacgaacacatagaaacacactcatcctccgtgatgggacaaaagcaaatctgacctggtctgataagtgctggatccaaagtttctattcggtttgtggccatgataactttcacgtcaccccttgaatcaaatccatccaactggttcaacagttccaacattgttcgctggatttctctttcaccaccagaatttgaatcgtatctttgaaaaagaagagaagggatgaaaaccgaactgatctcctgctgaaggggaattataaaaacacctctgatgccctcaattctagcaacaaaatcagcacagcctcccaaccaccacataatcttacttaaactgtagatgttttcgtgcctgagatggcatcattaattcagattgcacgttcggtatctgagcccctgacccaactatgagctcctggaaagccttgtgacaatggctgtgtccccagagtgcagatgatgcctggctcagagtggaaactcaaggcatggctgcacactaatctccagacggtcacgactcccaggtggttgtcacctggcaccccggagcagagcctaaagcatccacagccacatacagtaggagccaaggcaaacccatgtgctggccacacaggcagtgctccgtgatcattctcagacaagagctacaaggtctttacctctaaatgacacaaagagaaaaatgtacctttttgttccaatggcatcaatttcatcaataaacacgatggatggtgcgtgttcttctgcaactcgaaataactcccgaacgagtttgggcccatcacctaggtacttctgaataagttcagagccaaccactcttaggaaagtggctgaggtttggtttgctactgctttggctaataaggttttacctattttaggttagaaaaagaaagacaaagtgaaaaaaccctcaagtgctgtcttaacttgaaaaccctgtcactaccacctaaaacgggcataaaaaacgggcagatccctccgatgaaaaggcatgccaccattccagtgtcttgacattatgttctccaaggcagataagaggaaattcagaacgttctgattatttttaaccaccttcctaaagtcatcatcatagtgtcagaaaatacactttactgggttattcgaacttgcatagaaattgcaagttattaacccaacgcatgccaccagggtttgagatccaaactctactctgtgaaacaatcagtgatggaaaaacggcctgagaaccctaggtctgacctaaggaaacactctttagcaccaggcctgcagcccccggggccacccgaggagtcgtggctgtgctggctgggcttccccgaggctcagctgagacggggccagctcccactgaaacccacaaatgatagctcttcagacttttctcagcctctgttgtgtccttgtgaggaacttcctctcaccaatctcagggaagatctcaaacatttccagtcctgccccgttccttgagatttctatttcaggtcaaaaccaagagatctggcagccattttgtgaactttagggctggaagaccttggcccctttgacggtgagtgaggacaggggcacagggccaagcaggagcatcaggacacggtggcagttagagcagggctggtaaaggaccaaccttaggcccgcaggggaaggggaggaggctgccggggagtaacacagaagacttagttcaagtgggaagaaggacgaggcgctaagctttactacaagatgtggccacgacatccttgtggtgagacagacagagggctgggtgtgaaggcttaaagtgcggagattccccaagagaaccgactaaggctgctgaacagaagacaaaaaggacctaagtgggtggcatctttcagtccagaagcggccaaggccagctgctgtggcactgcagtagccagagggctcaccgaaccggcttcttcctcctcctggcaggcccaccaccctgtacttcaccccagctcctcagatcggtccccagcagtgcacatgcaccaaaggaggcctctcttccagcctcagccctgtcgccagctcactcccagagcgaccgcggccttgggctagtagtcactggcctctctgacacttgatttcctgggctgtgagaggacaggctgcagaagctccatgcctccggagctcgtctccacttgtctcccagtccctccactgtgggcagtccccagtcctctcaggatcctcctgggaacgtggtttcaattcactcaaataactgtgcttcctctggaatttacacagcgatgtactgctaagtcctggactgtacaacttactcaggtcaactagtcgcacggtgaaccaaatatatgtatttttatcttcatctatgtgttcaatattatattcattcagtaccaatggaccagagaatgaacctaatctgaacagcacagaataggttttaaatcagcggttctccaccatggttctgatgtctggctacacactccagatgcagatcgggattttcagggatgggaccaaatattggtattttttaaagctccagggtgatcctagtgtacagccaaggttgagcatcctggtttatttcctgtcttataaagtatatttaatagactcacactaatcttgaattatgaatacttgaaagccttatgttttacagcatataaatgaggtatacaagaggagttctaagaagctgtaaatgcattcacactgagcaggcatttggggtgggggctgcctactggtgttcgttttttgttgcaattcctactactgtttttaacacgttaagtctgttaagtctacaatttcaagtctaagataattcagtttctaagcatctactatacagataaatatacttttgtgtaataggtatgtttccgtatttattccaaaaacgtccaaaatgccgcttagaaaactttgttttaaactaaggaattgtggcatccttactcaagaattaattataacaagctaatactgcagctcaggagatcagctgagtgcccagagagtgtcaaacacagagcatacgtacctgtgccaggtggtccatagagaatgaccccttttgggggctttatacccatctcttcataatattcaggatgagtgagaggaagctccacggattcctagagaaaacaaacactggtaaaaataaaacgctttcctactaaaattatcagatccattaaccggcgtcaagaatatagctcactttcatcaaaaataagctaaaacctcacttactactgttagagacactgtgggtgacttcatctagcagcaaggacacattgaagaggacatctgtcccgcctgagctgccgccccctgcctattgctcccaatttccctctaactttccagaagcaacatttaagccttgagcaacatttaataagctcttcctgagcaaaagaacttcaagtgaaaatacaccctttccatttaaactacagacaggagctgggatgattttctgattgctgttacaccgacagacacgctggctagagatcgagctgtctgagaggtgccgggtggagaccggggacagctgtgcatgacctccctatagacgagacgccgtgcaggtggctggcccacagccaacctgaatgaccactgcacttcccccgactcacactgtccccacatcactggaggtttccagatggccacagctgaagttaacacagatggaaacattatatattcacacacacaataaacactgcatataaaaaggattaagctgcagctgctgaagcaacaatcacccaatttatttccattacctaactcggtattaacaactacaaaagagcacactggcaagctctgttactgcttgatcagtacagaaaaaacaaaatatgcaaaataactctaagcaccctaaatgaggcagcggtaagaaatctgaagtctaaaaacccagagccggtgcctagacctaccttaatttcctggatttggttgtccaaccccccaatatcagcataggtttcctggggggccttttctactttcatcaccgtgaccaagggatccgtgtcatccatgagcacccctatgacggcatgtacctacagagaacgttaagttttactgcagggacgtgaggtttgcacaatccatttacaacagtgcaatgccaatcaccagaacggcacgaatgggcggatccgagaggaaggaggaagcatccctaattaggggcttcgagaccggcaacttgccttgtggttgagcaggaccgaacagcctggctccagcaggtccttgtctacaaaggagagaatgctgacgtagtgttctgagcccacagacgtggacacgatggcgtgattgtcatcaatgatctcttccaacgttcctaccgacatcggggtccccctcagatcatccacctttgatctctcctcctatgtaagagtatgccatgaaggaaaagcgggttagacctaaaaagtagacaatgctgacagttttactagagttactagattttactacgtttacaaagcaggtggtgctttaaaagcagctaatttatgattcgtaagagcctgcacaggtcaactgcttgaatttcacttattcactgaattctatttaataactaaaaccgtcaatttgtaaaatcaaagttacagtaatttctccgtttacctcttgcttttcttctaaaggcttcatttgttcctgatttctaatgaattcttcctccatgagaagatagtctttaattctctctaacttcagtaattttaagcggcactgagtgtgaggtgtcactgtaattaaaaaagttttactgtatgtggagcttgacgttcgcaatgaattaagtccacccataagaaaaaaaggttaagacttaaataagctaataagcaggtgcctaaatgcaaagggaagagagactttggcagttctaagcaagcaggtaaaaacgggacgagttccatgaccagacagctaatacaaaatgacatacactaagtgaactgtctttatatataagaaaaagagaactcaaggacccaaaagatagtttgcttcggtgttttattccccataggtgctaataaaaatagctacaagtgctgttcagtcagaatacatgctgcatgctagctagaacaaaagcatccacttgtaggaggaccgtgagatatcagtggtattaacataggcggcaaacattttttccacactcttctgcgttcttctggcttgaagtcccctgctgcacaggaatcttagcatatatagacaaaaatgccaatcttttcttttgtggttcctaggtttcttcaaaatgtctctccttccctgaggttaaatatattcctgaatttttgttcatttacttattttcacgtctgtactacatctggcaaaaagggatctaatttcattttccctcaacagcaaataaaatatgccagccatttatgttaaatacttcatcctcttcccacagaactcagacatcaccttaccatacagtaatgacccatgtgacctgacttcctatgctcttctggcaatcggaggacctagactttaccgataccatattgactcattattcattttttcaaattgtcagattcctttccttcttaaccaaccaacatttattgaaattatttcatctaagcaggaagagacttgtttagatggggatgggagggttatgtaagacgaagtgatgagaagaaggcagccatgggaaggagaggggggaagaacgtttttaagcaaacggcaaaagccctaatgtggataagagtcaaagaacacaaggcagggccgtgtgaacgacagcaaggggagtgacgggctgaggacagaggtgggctgggtcaggtcacctgatctgaatctcagtctatgttcagtatgaagccactgaaacagctggtgttcaggaatcccaagatggacattccaacacagtggcgttccatttcttcggggaataagcgtgttttctaagttattcaagctcaatctgacttttctaatctcaaactacactcttcatacctcagaggagctggctgtttaagtgagacatggttgtatgccgtctgcacgccgctaacaccaaaacacagcttttaccgcagcccagaggagggccacacccgcgagcagagctgcagccaccccgtttcctgactccacattccgacctctacgctacacacacagacggctctcatggaaccgacacagcagggaggaaccattacccagtggcagcttgctggcggcatctggtccctttgttttcttcttctttttccctactctggttggtacaggaggttcgtacttctttttcttgtccttgaatttttagaacagcaggaaaaaacaaaaaccacacagatcatatcaaaacacaaacttctgtaaggccatcatctatttctcggggctgtaattttccttatctttcagaatgctattaaaaactccttttacaaataaagctaggtttacacttctgcaattggtgaatgtaactgatctttttatttttttatttttaaaagtttatttattttgagtgaatccgtatcagaggcagag
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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