2024-04-25 15:35:41, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_049598977 1868 bp mRNA linear VRT 23-JUL-2022 DEFINITION PREDICTED: Epinephelus fuscoguttatus vimentin like (viml), mRNA. ACCESSION XM_049598977 VERSION XM_049598977.1 DBLINK BioProject: PRJNA859906 KEYWORDS RefSeq. SOURCE Epinephelus fuscoguttatus (brown-marbled grouper) ORGANISM Epinephelus fuscoguttatus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Perciformes; Serranoidei; Serranidae; Epinephelinae; Epinephelini; Epinephelus. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_064766) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: Epinephelus fuscoguttatus Annotation Release 100 Annotation Version :: 100 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..1868 /organism="Epinephelus fuscoguttatus" /mol_type="mRNA" /db_xref="taxon:293821" /country="China" /collection_date="2018-12" /linkage_group="LG15" /note="scaffold1" gene 1..1868 /gene="viml" /note="vimentin like; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 84 Proteins" /db_xref="GeneID:125902533" CDS 86..1453 /gene="viml" /codon_start=1 /product="vimentin like" /protein_id="XP_049454934.1" /db_xref="GeneID:125902533" /translation="
MAYKVSTTSSYRKMFGGERVTARSSYSSRQLTSPVRTSRVSYGLSSAPAVYATKTQRLRSSAGMPRLSSEQLDFSLSDAINSEFITNRTNEKAQMQSLNDRFASYIEKVRFLEQQNKILLAELEQLRGKGTSRVGDLYEDEMRELRRQVDQLTNEKARVEVHRDNLADDIDRLREKLQDEMAQREEAEGNMQSYRQDVDNAALARLDLERKVESLQDEINFLKKLHDEEMLELQNQIQQQQHVQVDMEMAKPDLTAALRDVRLQYENLASKNIQESEDWYKSKYADLTEAAARNNDALRVAKQEANDYRRQVQGLTCEVDALKGTNESLERQMREMEENFSLETGGYQDTIGRLEEDIHNMKDEMARHLREYQDLLNVKMALDIEIATYRKLLEGEESRITTPLPNFSSLNLRETMIETKPHFESTTTKKVLIKTIETKDGQVINESTQNHDDME"
misc_feature 107..352 /gene="viml" /note="Intermediate filament head (DNA binding) region; Region: Filament_head; pfam04732" /db_xref="CDD:428095" misc_feature 353..1282 /gene="viml" /note="Intermediate filament protein; Region: Filament; pfam00038" /db_xref="CDD:425436" polyA_site 1868 /gene="viml" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN
tagggaacgccttcctaggcgcactccgctgatgcagttgggacaagagcaacgcagagctattgtctgagaagataccaccgtgatggcttataaagtgtctacaacgtcttcttacaggaagatgtttggcggagaaagagtcacggccaggagcagctactccagccgccagctcaccagcccggtgcgcacctcccgcgtatcctacggtctctcctccgccccggccgtctacgcaaccaagacccagcggctccggagcagcgcaggcatgccccggctgtcctctgagcaattggacttctccctgtccgacgccataaacagcgagttcatcacgaaccgcaccaacgagaaggcgcagatgcagtcgctcaacgaccgcttcgccagctacatcgagaaggtgcgcttcttggagcagcagaacaagatcctgctggcggagctggagcagctgcggggcaaaggcacgtcccgggtgggagatctgtacgaggacgagatgcgagagctgaggcgccaggtggaccagctcaccaacgagaaggcccgggtggaagttcaccgggataacctggcggacgacatcgacaggctgagagagaagctgcaggatgagatggcccagcgggaggaggctgagggcaacatgcagagctacagacaggatgtggacaatgctgccctcgccagactggacctggagcggaaggttgagtcactccaggacgagatcaacttcctcaaaaagctgcatgatgaggaaatgctggagctgcagaaccagatccagcagcagcagcatgtgcaggtggacatggagatggctaaacctgacctgacagctgccctgagggacgtccgtctgcagtatgagaacctggcctccaaaaatatccaggagtccgaggattggtacaaatccaagtatgctgacctcactgaagctgcagccaggaataatgatgctctgagagtggccaagcaagaggccaacgactacagacgccaagttcaggggcttacttgcgaggtggatgcccttaaaggaaccaatgagtccttggagcgccagatgagagagatggaggagaacttctccctggaaacgggcggttaccaagacactatcggccgcctggaggaggacattcacaacatgaaggacgagatggcccgtcacctccgggagtaccaggacctcctaaatgtcaagatggccctggacattgagattgccacctacaggaagctgctggaaggagaggagagcagaatcaccaccccactgccaaacttctcatctctaaacctgagagaaacaatgattgaaaccaaacctcattttgaatctacaacaaccaagaaggttctcatcaagaccatcgagaccaaggatggtcaggtgatcaacgagtcgacccagaaccacgatgacatggagtaataatgtctttgtctttgccaaacaatcaacaaaagcaatacgaagaaacacatttcactgggggctacgagcaagcaaacaaaccaacaacaacaacaacaacaacaacaacaacacaaaaagcaaacagcttcaaaaagtgcctttatatgtgatgatccagtaagcctgttagttgacacagactgtattttgcttcctcctctgctgagagtattatcttttgtcacatttgtttagacacaataatgaaatcagcacaacatagaaatccttattgaggtctacaaaaatctttctctgtaaccaaagtagtatttttgatcaatacagcatgcacactccgggaaatctgtatgctaaagatgtcacaattgcctgtacgcagcaataaaccagtaagaccgtaactcaa
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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