GGRNA ver.2 Home | Help | Advanced search    Previous release (v1)

2024-03-29 14:46:57, GGRNA.v2 : RefSeq release 222 (Jan, 2024)

LOCUS       XM_049585409            2199 bp    mRNA    linear   VRT 23-JUL-2022
DEFINITION  PREDICTED: Epinephelus fuscoguttatus vimentin-related 2 (vimr2),
            mRNA.
ACCESSION   XM_049585409
VERSION     XM_049585409.1
DBLINK      BioProject: PRJNA859906
KEYWORDS    RefSeq.
SOURCE      Epinephelus fuscoguttatus (brown-marbled grouper)
  ORGANISM  Epinephelus fuscoguttatus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Actinopterygii; Neopterygii; Teleostei; Neoteleostei;
            Acanthomorphata; Eupercaria; Perciformes; Serranoidei; Serranidae;
            Epinephelinae; Epinephelini; Epinephelus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_064760) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: Epinephelus fuscoguttatus Annotation
                                           Release 100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.0
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2199
                     /organism="Epinephelus fuscoguttatus"
                     /mol_type="mRNA"
                     /db_xref="taxon:293821"
                     /country="China"
                     /collection_date="2018-12"
                     /linkage_group="LG9"
                     /note="scaffold1"
     gene            1..2199
                     /gene="vimr2"
                     /note="vimentin-related 2; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 3
                     Proteins"
                     /db_xref="GeneID:125894170"
     CDS             136..1308
                     /gene="vimr2"
                     /codon_start=1
                     /product="desmin"
                     /protein_id="XP_049441366.1"
                     /db_xref="GeneID:125894170"
                     /translation="
MAMLRVSSYRKLFEDDSWSRNGGLSMQCAPQYRSSVRGVAVDECDCDKLDFVAAKELTKEGLSRFIEDRTIIAALNDRLVRLIELAHCFEEENESLECQIAELEEKLKSRQAYSGITSAVAKPDYSLDAVVERLRRERDEILCHTEELRNELERLMNEYEKAAQQRTLLQQGRQDVAEDVDAVAAECLALREQVAIYEEQLANMEAQHTTAVETLLEPAEGTAGAVAAIKFGSPDITPALDVKKYYCQLAESLQYECGAASSAGVHRGDGKQLEAGGAAGSTVKDLSKIKDVSEIKMLISKLDKELAELQKCNEELEDEVEMKKAAYMDEIAELECTIDEMRRQEADFQVQMREQCEDYKELLSEKMARDMEITAYRSLVEEEEARLCIL"
     misc_feature    358..1293
                     /gene="vimr2"
                     /note="Intermediate filament protein; Region: Filament;
                     pfam00038"
                     /db_xref="CDD:425436"
ORIGIN      
ctactcagtggccggtgagagatccttcacctcactgttacattttcattccctgtgaatataaaacccccgccccagacctgctgccgttatttgcctgttgtgttgttgctcagtttgaacccacccaaagccatggccatgctccgagtgtcatcttaccgcaagctgtttgaggatgatagctggagtcggaatggagggttgagtatgcagtgtgcgccgcagtacaggtcctctgtcaggggtgtggctgttgatgagtgcgactgtgacaagttagactttgtggctgccaaggagctcaccaaggagggtctgagtcggttcatcgaggaccgcaccatcatcgctgccctcaatgaccgcctggtcaggcttattgaactggcccattgtttcgaggaggagaatgagtctcttgaatgtcagattgctgaactagaagagaagctgaaaagtcgacaagcctactctggcatcacctctgctgtggcaaagcctgactacagtctagatgcagtggtggaaagactgcgcagggagagggatgagattctgtgtcacactgaggagctgcggaacgaactcgaacgtcttatgaacgagtatgagaaggctgcacagcagaggaccctcctgcagcagggacgacaagatgttgctgaggacgtcgatgctgtggcagcagagtgtttggcgctgagggagcaagtggctatctacgaggagcagctggccaacatggaggcccagcacacgacggcagtggagactctgctggagccggctgaagggactgcaggggcggtggcagctattaaatttggcagccctgacatcactccggccctggatgtaaagaagtactactgccagctggctgagagcctccagtacgagtgtggtgcagcctcctccgctggggttcaccgtggtgatggaaaacaactggaagcgggaggagctgcggggtcaacagtcaaagacctgtcaaagataaaggacgtcagtgagattaaaatgctgatttcaaagctagacaaggagctggctgagctgcagaagtgtaatgaggagctggaggacgaggttgagatgaagaaggctgcgtacatggacgagatcgctgagctggagtgtactatagatgaaatgcggcgccaggaggctgacttccaagtgcagatgagggagcagtgtgaagactacaaggagctgctcagtgagaagatggccagagacatggagattactgcctacaggagtctggtggaggaagaggaggcgaggctgtgcatcctgtgactcgaggctggagagtgatactggcaggctggatgctccccccaacacatggattagaaaacagaccaaagagaaacgtaaaaaaacacaccagaaaccagcactaggatgaagcttgaggtaccaatgcagcaatttaagcagaacttatcatgacagattaatcccgtctggaggccttaagacgggccattgataacaggtcgctaggagatgaccccgagactccaagaaagatggagctgtctaaatgtggtgggaggatcggggctgcgccacaagtgtgtatccattcagtgtctggcagggatatttccttaagtgggttttatctttaccagctccctgatatgtttcataaatgttttgtcccctctttgttgaacacaaacacacaagtgaaactgtgcagctccgtgaagcccccccccactgataccaccttgtccatcactcaaactttgtctgattactggctcttaacctacgaccccttcactgttaacaaacatattgacagctcttcttttagtaactaaaaacattccaccttccctttgcttttacagtcatgtttagtttcacatataactgacagtcatgtgtgcagtgctctgtttgcttttcaaatggttcatgaagttgttttctttcacaaaatgagcacctggatgtttctgcaagaaaaagccagtgtgatttattatttctcttttgaaaaccaacgtcccaatttgctgtcgtttcagaaataagcattcggtaatacattcctgtgtaatctcttccttattttcaacatgactttgaagatgtctgtgataaatcattcccgcttatgcacaatgcatcagaatctgcttcagatttaaattaaataaaactagttgc
//

by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).

If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]