2024-03-30 00:36:58, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_049568452 3606 bp mRNA linear VRT 23-JUL-2022 DEFINITION PREDICTED: Epinephelus fuscoguttatus procollagen C-endopeptidase enhancer b (pcolceb), transcript variant X2, mRNA. ACCESSION XM_049568452 VERSION XM_049568452.1 DBLINK BioProject: PRJNA859906 KEYWORDS RefSeq. SOURCE Epinephelus fuscoguttatus (brown-marbled grouper) ORGANISM Epinephelus fuscoguttatus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Perciformes; Serranoidei; Serranidae; Epinephelinae; Epinephelini; Epinephelus. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_064774) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: Epinephelus fuscoguttatus Annotation Release 100 Annotation Version :: 100 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3606 /organism="Epinephelus fuscoguttatus" /mol_type="mRNA" /db_xref="taxon:293821" /country="China" /collection_date="2018-12" /linkage_group="LG23" /note="scaffold1" gene 1..3606 /gene="pcolceb" /note="procollagen C-endopeptidase enhancer b; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 12 Proteins" /db_xref="GeneID:125883850" CDS 154..1890 /gene="pcolceb" /codon_start=1 /product="procollagen C-endopeptidase enhancer b isoform X2" /protein_id="XP_049424409.1" /db_xref="GeneID:125883850" /translation="
MEDRVWTVCLLVILTLGWTDAQNQNFTRPNFQCGGHLVTDSGIVASEGFPSPYKPNSKCTWYITVPEGHVVMLSFRLFDMEADPTCRYDYLDVYNGHSRLVQKLGRFCGTFRPGALIATSNTMMLEMVSDEATGGRGFLAAFSAGKPHVEENQFCGGRLTKSQGSVKTPNWPNSNYPAGISCSWHISVETGNVIEVKFEKLDLEPDTYCRYDYVALFNGGERDNSRRIGKFCGDRPPGTIVTNGNELLVQFVSDLSITSDGFMAHYASVPRGSRRPTAGGDFIYGPQTTTAPQKPAVKPIKPTKPPPKPKPAPKPKPTPKPAKKPLVKKPPPRKPAAKPTPKPKPAKPTPKPKPAKPTPKAPVKKPTPKPGLRPTPKPKIIKPTLKPSIKTKPTRKPALKTKPTLKPAVKPVKPTPKSRAKPTPKPKIKPKVTPKPGVSKTVTKKPLVTKKPLPLNPVCTQPCKRTGTLQSSFCPHDFVITGKITSLTPGERGSVSVEVFLIKAYKPGRLNIARSGPIMSATLISTCKRCPGLIKGRNYVLMGKVDALGNGHLSPSSFTLLYKPIHAKALASLAGKPC"
misc_feature 250..585 /gene="pcolceb" /note="CUB domain; extracellular domain; present in proteins mostly known to be involved in development; not found in prokaryotes, plants and yeast; Region: CUB; cd00041" /db_xref="CDD:238001" misc_feature order(274..276,280..282,286..288,367..369,382..384, 496..498,568..570,574..576,580..585) /gene="pcolceb" /note="heterodimerization interface [polypeptide binding]; other site" /db_xref="CDD:238001" misc_feature 616..957 /gene="pcolceb" /note="CUB domain; extracellular domain; present in proteins mostly known to be involved in development; not found in prokaryotes, plants and yeast; Region: CUB; cd00041" /db_xref="CDD:238001" misc_feature order(640..642,646..648,652..654,736..738,751..753, 868..870,940..942,946..948,952..957) /gene="pcolceb" /note="heterodimerization interface [polypeptide binding]; other site" /db_xref="CDD:238001" misc_feature <1249..>1407 /gene="pcolceb" /note="transport protein TonB; Provisional; Region: PRK10819" /db_xref="CDD:236768" misc_feature 1513..1887 /gene="pcolceb" /note="NTR domain, PCOLCE subfamily; Procollagen C-endopeptidase enhancers (PCOLCEs) are extracellular matrix proteins that enhance the activity of procollagen C-proteases, by binding to the procollagen I C-peptide. They contain a C-terminal NTR domain, which...; Region: NTR_PCOLCE; cd03576" /db_xref="CDD:239631" polyA_site 3606 /gene="pcolceb" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN
tcgacaacactgaatgcttcttcaagcgcctccatcatcaaaaaaacacggaaacaggacgtgacgaaatatttacatacatttttacagagaatagcgttcgcacaggatattacccatggtattttctccggaccattttacagaagcaggatggaggacagggtgtggactgtgtgcctccttgtcattttgacgctgggatggaccgacgctcagaatcagaacttcaccaggcccaacttccagtgtggaggccacctggtcacagattcgggcatcgtggccagtgaaggattccccagtccctacaaacccaacagtaaatgcacctggtacatcactgtcccagagggtcacgtggtcatgctatctttccgcctcttcgacatggaggccgaccccacctgtcgctacgactacctggacgtctacaacggtcactcccgcctggtgcagaagctgggtcgtttctgtgggacgttccggcccggcgccctcatcgccacctccaacaccatgatgttagagatggtgtcagacgaggccacagggggaagaggctttctcgccgccttcagcgctgggaagccacatgtggaagagaaccagttctgcggaggacgtctgaccaagtctcagggctctgtcaagacgcccaactggcccaactctaattacccagcaggcatcagctgctcctggcacatctccgtagaaacaggcaacgtgattgaggtgaagtttgagaagctggacctggagcctgacacgtactgtcgctacgactatgtggcgctgtttaacgggggagagagggacaactcgcggcggatcgggaagttctgcggagacaggccgccaggaacaatagtgacaaacgggaacgagctcctcgtccagttcgtctccgacctcagcattacctcagatggcttcatggcccactacgcaagtgtgcctcgcgggtctcggaggcccaccgccgggggagacttcatctacggacctcagacgaccacagcgccacaaaaaccagccgtgaagccgatcaaacccaccaaaccacctcccaaacctaagcctgcccccaagcctaaacccaccccaaaaccagccaagaaaccactggtgaagaaaccgccgccacgcaaacctgccgccaagcccacacctaaacccaagccagctaaacccacacctaaacccaagccagctaaacccacacctaaagcacctgtgaaaaaacccacacctaaacctggacttagacctacacccaaacctaagatcattaagccgacgctcaaaccgagcatcaaaactaaacccacacgtaagcctgcactgaagaccaagcccaccttaaaacctgccgtcaaaccagtaaagccaaccccaaagagcagagccaaacctacacccaaacccaagattaaacccaaagtgacgccgaaacctggagttagcaagacggtgacgaagaagcctctggtgaccaagaaacctttaccactgaacccagtgtgcacacaaccctgtaagaggacaggaaccctccagtccagcttctgccctcatgacttcgtgataacaggtaagatcacatctttgacccctggtgagaggggctcagtgtcagtcgaggtgttcctgatcaaggcctataagccaggacgcctgaacatcgccagatcagggcccatcatgtcggccacactgatctccacctgcaagagatgccctgggctaattaaaggacgcaactacgtgttgatgggaaaagtcgacgcactgggcaatggccatctcagcccctccagcttcaccctcctctacaagcccatccacgccaaagcactggccagcctggcgggcaaaccgtgctgacatcacagcccagcccaccaatcagatggacagtcctctgactctctctctgatcacatgtaactttacataagagtgaaaatattatgagtaatatccaaacctgatttttatacaatgctgccgtgaaaaatgatttttaaaaaacatacaacattataaagtgttatattttgtattttgtatgtaagttatgatatgtctgtgattaatggtgcacatcaataaaccatctggtgcttaacatgatctaatatctcaattctactgttcacagtgaaatatgacgtgaaacactttaaggtaaaatttttattaggcacaaacatcaaaacatagataaatattttaatgcccaaagaaggcattatgtttcgggttgtcctgccatcccattctcatgaacatggtatctcaagaacaccttaagagaatttctccaactttggcacaaacatcaacttggattaaaggatgagctgattagactgtggtggtcatagtcaaaggttgctgcgatgattcttgtgatcgtaatatctcaagaacacttcagggtcatttttttcagatttggcacaaacgtctacttgaactcaatgatgaactgattcgattttggtggtcaaaggtcaaggtcactataaccttgtcatttgcattcttgttaacgtgatatctcaagaaaaccttacgggaattccttcaactttggcacaaatgtctgcttaggctcaagaataaactgattagattttggtggtcataggtcactgtgacctcgtccccagcattctcgttagcgggatatcttaagaacatggtaagggtatttcttcaactttggcacaaacatccacttggactcaaggatgaactgattatattttggtggttgtagtttaaaggtcaaggtcaccgtgacctccttttgtctcattctcatgaaagtgatatgtcaagaacacttcagggaaacattttcaattttacacaactgtcaatggtcaaggtcactgtgacctccttctgtcacattgttgttaatgtgatagctaaagaacatagtaagggatttttttcaacacaaacatgaatgaactcataagattttggtcattgtaggtcaaaggtcaaggtcactgtgaccttctgtcttatttttgtgaatggtatatttcaagaactctctgggttgtttttcaaatttggcacatttgttcacttggactcaagaattaactgattagaatgtagtggtcaaaggtcaaggtcactgtgatcttctgtctcattcttgtgatcgtgatatctcaagaactctctgggttctttttcaagtttggtaccgatgtgactaacaccttaaggaaatttcttcaactttggcacaaacatccacttggacttagggataagattagggggtcaaaggtcactgtgaccgttcacccatctcattcttgtgaatgtcatatctcaaaaaggctgtggaagaattttcttaaatttggcacaaatgtctacttggactcaagaatgaaccaattagattttaggggtcaaaggtcaaggtcactgtgacctcattaatcatgtttttgcccataagtcaagaattcttgtgctaattatgacaaaacatttgtaaaaactattgtattctgtatgtaaattataatattttacagaacaataaaccatatggtgcattaa
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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