2024-04-24 09:36:17, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_048984695 2867 bp mRNA linear VRT 12-JUL-2022 DEFINITION PREDICTED: Brienomyrus brachyistius vimentin-related 2 (vimr2), mRNA. ACCESSION XM_048984695 VERSION XM_048984695.1 DBLINK BioProject: PRJNA854133 KEYWORDS RefSeq. SOURCE Brienomyrus brachyistius ORGANISM Brienomyrus brachyistius Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Osteoglossocephala; Osteoglossomorpha; Osteoglossiformes; Mormyridae; Brienomyrus. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_064550) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: Brienomyrus brachyistius Annotation Release 100 Annotation Version :: 100 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2867 /organism="Brienomyrus brachyistius" /mol_type="mRNA" /isolate="T26" /db_xref="taxon:42636" /chromosome="18" /sex="male" /tissue_type="skeletal muscle" gene 1..2867 /gene="vimr2" /note="vimentin-related 2; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein" /db_xref="GeneID:125713497" CDS 147..1322 /gene="vimr2" /codon_start=1 /product="glial fibrillary acidic protein" /protein_id="XP_048840652.1" /db_xref="GeneID:125713497" /translation="
MLRVSSYRRLFEEEQWTGAGVISRRCAEQYGPSARALDGPWGEPDFEEACRQIKEAMSRFVQERGVIAALNDRLAVLVEMVRFLEEENNSLECEILELEGKQSGDGTVDHRGLPDYSLEAVMEKLRREKGETLRDVTELKRELEHLQAKQAEVAAQRSLIHKAREDVALDVDAVTAECLALRDQLNIFEQQLAAMQEAHEVMVENLVEPGENIVALALEFPRPDVAPAIQEIKEYYHELAESLQYDLKLAAPSPVLAGREAAAVSARALDAGKVADVTEAIDTGEVRRQVETLRRELAQLEQCGGQLEGEIEQRGEAHLQEIEDLECYAADLKTIQQDLETEMREHCGCYDELLNEKMALDIEICAYRGLVQQEEERLCYLRHQSEIGFAG"
misc_feature 330..1277 /gene="vimr2" /note="Intermediate filament protein; Region: Filament; pfam00038" /db_xref="CDD:425436" polyA_site 2867 /gene="vimr2" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN
tgcctgtcctatagttggctctgtcagcagtccgtgaggcatccctcagctacatgcgagattgctgcttccctgctacaaaaacacccgtcccacccagaacaccttagttttccttgcggccagcttgtcctccacctacggccatgctgagggtgtcttcctaccgccggctctttgaagaagagcagtggaccggggcaggtgtgatcagccggcgctgtgcagagcaatacggcccatctgccagggccttagatggcccctggggggagccggactttgaagaggcatgcaggcagatcaaagaggccatgtctagatttgtgcaggaacgtggtgtcattgctgcactcaatgaccggctggctgttctcgttgaaatggtgaggtttctggaggaggagaataattccctagagtgtgagattctggaactagaggggaagcagagcggggatgggacagtcgaccacagaggacttcctgactacagcttggaggccgtgatggagaagctgagaagagagaagggggagactctgcgcgatgtcactgagctgaaacgagagttagagcatttgcaagcgaagcaagcagaagtggctgctcaaaggtccctcatccataaagccagggaggatgtcgctttggatgtggacgcagtgaccgcggagtgcctggccctgagggaccagctgaacatcttcgagcagcagcttgctgccatgcaggaagcacatgaggtgatggttgagaacttggtagagcctggagaaaacattgttgcgctcgccctggagttccccaggcctgatgttgcccctgccatccaggagatcaaggagtactaccacgagcttgcagagagcctgcagtacgacctgaaattggcagcaccctctccagtgctggcagggagggaggcagccgccgtctctgccagagcactcgatgctggcaaagtggctgacgtcactgaggcgatagacaccggagaggtgaggaggcaggttgaaaccttgcggagggagctggcccagctggagcagtgtggcggccagctggagggcgagatcgagcagaggggggaggcccatctgcaggagattgaggatctagagtgctatgctgcagacctgaagaccattcagcaggacctggagactgagatgagggagcactgtgggtgctatgatgagctgctgaatgagaaaatggccctggacatagaaatctgcgcctataggggtttagtgcagcaggaagaagagcgattgtgttacctgcgacaccaatcggagatcggatttgcaggctgacagagaggcacgtgcaccaatgattagttagcttcttagagcggttaacactaacacacatgcaaagccaatgcttgtgacatcgtggttgtgcaaaatctggccgttttctttagctcgccggtcagggccaggtaagacttatccaacaagaatgatggctgttgtctgtcagcaaagtgggagcgggaagcagtgtccttggattacagcatgactgggggctggttagggaaggtcatgacgtcccttctcgagtttccatagcccccccactccttaccacgatcgcagccacagccactgatatccctcccctgtgtttccgtccagcccagtcttcacagacagtgtgttgctgaggcactgaactgccgactctagagtggcaggtaaaataaatcgccctcttgtgcaaacacaggctgattacggccacttaacctctgcttcgtcctgaagtcgccggatatcgttcatgctcagataagataccttgaagccatgaatcaagcaagtgatgctaattaccttggtttgtttcacaaagcttctcttaagatgcctaatcgtccatcaagtcatgcgtgtgatatttcactctgtgtctctgtaaagggttaatgaacccctaaagctcttaatcaaacataaatttacttatgataagtttcctggtacagggcggcatcgcaatcaaattttggctggggtgtcagtttatgagtggattttcatagttattatgactgtactccagctgcaaatgctgaaaaagccaccgcggaattcatgccacagatttctactgtattgccttttgcaatgaaatttaaatccctgtaaatcctgtcaggacagccagaaaacggagtatgactatcgtaaaaaaacatgacctcggaaaaataaagattacttcacctcaggcctctcacagatattatggtgattaaacactgactacgtgaccgacagcatgaatgaatcctctactacgagtaccggctctgactgagcctctgactgtcacacgagcactgaggacgggggcaatgcagcacaaacttctgctggattctgccgatgcccttggcaacgttattggaggactggagaatgctgaagggtccatgtgacgtctttattggtgagcaggagaggaggctgtctcaggatgaagactctttgttctgtgctcctcttcagtagattgaaccctctgggcttgtctccagactctctgtggactgcgccatttctgtgaacccccccgagactggacacgggcagtggtgctgggagggggaagtggaagagctggatatgtaatagaagcatggatgggggagggagtgatcatcacagggttagatccagcttctgttcccctttagggggtttaatttaaggcactgcattcctcaaaagtcagaccttagcatttcgtatagaaggtaattcagatttatttcttgtctcactttagcagagcttaacagcagagctattaacagcgaataaagtttgtggacaaaactataa
//
by
@meso_cacase at
DBCLS
This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
[Full Text]