2024-11-01 08:44:10, GGRNA.v2 : RefSeq release 226 (Sep, 2024)
LOCUS XM_048734512 2744 bp mRNA linear INV 21-JUN-2022 DEFINITION PREDICTED: Nematostella vectensis DNA ligase 1-like (LOC116610563), mRNA. ACCESSION XM_048734512 VERSION XM_048734512.1 DBLINK BioProject: PRJNA847078 KEYWORDS RefSeq; includes ab initio. SOURCE Nematostella vectensis (starlet sea anemone) ORGANISM Nematostella vectensis Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; Edwardsiidae; Nematostella. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_064044) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Nematostella vectensis Annotation Release 101 Annotation Version :: 101 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 9.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 5% of CDS bases ##RefSeq-Attributes-END## FEATURES Location/Qualifiers source 1..2744 /organism="Nematostella vectensis" /mol_type="mRNA" /db_xref="taxon:45351" /chromosome="11" gene 1..2744 /gene="LOC116610563" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 95% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns" /db_xref="GeneID:116610563" CDS 192..2744 /gene="LOC116610563" /codon_start=1 /product="DNA ligase 1-like" /protein_id="XP_048590469.1" /db_xref="GeneID:116610563" /translation="
MTDELQEKELENDRQYQTIVDLKDELKSLTASAKEMKQNQNESEELAACRSELEKAKEEIEKARASYDKEKDRLEKLNKEMTDELKEKELENDRQYQTIIDLKDELKSLTASAKEMKQNQNESEELAACRSELEKAKEEIEKARASYDKEKDRLEKLNKEMTDELQEKELENDRQYQTIVDLKDELKSLTASAKEMKQNQNESEELAACRSELEEAKEEIEKAWALYDKEKDRLEKLNRQMTDELQEKELENDRQYQTIVDLKDELKSLTASHKEMKQNQNGSEELAACRSELEKAREEIEKAWALYDKEKDRLEKLNRQMTDELQEKELENDRQYQTIVDLKDELKSLTASQKEMKQNQNGSEELDACRSELEKAKEEIEKARASYDKEKDRLEKLNKEMTDELQEKELENDRQYQTIVDLKDELKSLTASAKEMKQNQNGSEELDACRSELEKAKEEIEKARASYDKEKDRLEKLNKEMTDELQEKELENDRQYQTIVDLKDELKSLTASAKEMKQNQNESEELAACRSELEEAKEEIEKAWALYDKEKDRLEKLNRQMTDELQEKELENDRQYQTIVDLKDELKSLTASHKEMKQNQNGSEELAACRSELEKAREEIEKAWALYDKEKDRLEKLNRQMTDELQEKELENDRQYQTIVDLKDELKSLTASQKEMKQNQNGSEELDACRSELEKAKEEIEKAWALYDKEKDRLEKLNRQMTDKLQEKELENDRQYQTIVDLKDELKSLTASHKETKQNNNGSEELAACKSELEKAKEEIDKAWALYDKEKDRLEKINWQMTGKVLICNYSDGLVLSSPSVFGIPDETLALVFHILHEYEQSLASTDRFN"
misc_feature 195..2537 /gene="LOC116610563" /note="chromosome segregation protein SMC, common bacterial type; Region: SMC_prok_B; TIGR02168" /db_xref="CDD:274008" ORIGIN
tgagagctgattctgattgactgtgctgactaacattgattataatacttctttccttttagcaaaatcagaatgaaagtgaagaacttgctgcatgtagatctgaacttgagaaagcgaaggaggagatagagaaagcccgggcatcatacgacaaagagaaagatcgccttgaaaaactgaacaaggaaatgacagatgagctccaggagaaagaattagaaaatgatcgtcaatatcaaacaattgttgatttgaaagatgagctgaagtcattaacagcaagcgctaaggagatgaagcaaaatcagaatgaaagtgaagaacttgctgcatgtagatctgaacttgagaaagcgaaggaggagatagagaaagcccgggcatcatacgacaaagagaaagatcgccttgaaaaactgaacaaggaaatgacagatgagctcaaggagaaagaattagaaaatgatcgtcaatatcaaacaattattgatttgaaagatgagctgaagtcattaacagcaagcgctaaggagatgaagcaaaatcagaatgaaagtgaagaacttgctgcatgtagatctgaacttgagaaagcgaaggaggagatagagaaagcccgggcatcatacgacaaagagaaagatcgccttgaaaaactgaacaaggaaatgacagatgagctccaggagaaagaattagaaaatgatcgtcaatatcaaacaattgttgatttgaaagatgagctgaagtcattaacagcaagcgctaaggagatgaagcaaaatcagaatgaaagtgaagaacttgctgcatgtagatctgaattggaggaagcgaaggaggagatagagaaagcctgggcattatacgacaaagagaaagaccgccttgaaaaactcaacaggcaaatgacagatgagctccaggagaaagaattagaaaatgatcgtcaatatcaaacaattgttgatttgaaagatgagctgaagtcattaacggcaagccataaggagatgaagcaaaatcagaatggaagtgaagaacttgctgcatgtagatctgaattggagaaagcgagggaggagatagagaaagcctgggcattatacgacaaagaaaaagatcgccttgaaaaactcaacaggcaaatgacagatgagctccaggagaaagaattagaaaatgatcgtcaatatcaaacaattgttgatttgaaagatgagctgaagtcattaacagcaagccagaaggagatgaagcaaaatcagaatggaagtgaagaacttgatgcatgtagatctgaattggagaaagcgaaggaggagatagagaaagcccgggcatcatacgacaaagagaaagatcgccttgaaaaactgaacaaggaaatgacagatgagctccaggagaaagaattagaaaatgatcgtcaatatcaaacaattgttgatttgaaagatgagctgaagtcattaacagcaagcgctaaggagatgaagcaaaatcagaatggaagtgaagaacttgatgcatgtagatctgaattggagaaagcgaaggaggagatagagaaagcccgggcatcatacgacaaagagaaagatcgccttgaaaaactgaacaaggaaatgacagatgagctccaggagaaagaattagaaaatgatcgtcaatatcaaacaattgttgatttgaaagatgagctgaagtcattaacagcaagcgctaaggagatgaagcaaaatcagaatgaaagtgaagaacttgctgcatgtagatctgaattggaggaagcgaaggaggagatagagaaagcctgggcattatacgacaaagagaaagaccgccttgaaaaactcaacaggcaaatgacagatgagctccaggagaaagaattagaaaatgatcgtcaatatcaaacaattgttgatttgaaagatgagctgaagtcattaacggcaagccataaggagatgaagcaaaatcagaatggaagtgaagaacttgctgcatgtagatctgaattggagaaagcgagggaggagatagagaaagcctgggcattatacgacaaagaaaaagatcgccttgaaaaactcaacaggcaaatgacagatgagctccaggagaaagaattagaaaatgatcgtcaatatcaaacaattgttgatttgaaagatgagctgaagtcattaacagcaagccagaaggagatgaagcaaaatcagaatggaagtgaagaacttgatgcatgtagatctgaattggagaaagcgaaggaggagatagagaaagcctgggcattatacgacaaagagaaagaccgccttgaaaaactcaacaggcaaatgacagataagctccaggagaaagaattagaaaatgatcgtcaatatcaaacaattgttgatttgaaagatgagctgaagtcattaacagcaagccataaggagacgaagcaaaataacaatggaagtgaagaacttgctgcgtgtaaatctgaactggagaaagcaaaggaggagattgataaggcctgggcactatacgacaaagagaaagatcgcctggagaaaatcaactggcaaatgacaggtaaagtgctgatatgtaattattcagacggcctcgtactttcatctccctcggtgtttggaatccctgatgaaacactcgcacttgtttttcatatattacatgaatacgaacaaagcctggcaagcactgacaggttcaattag
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This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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