LOCUS       XM_048367584            1854 bp    mRNA    linear   ROD 19-MAY-2022
DEFINITION  PREDICTED: Perognathus longimembris pacificus vimentin (Vim), mRNA.
ACCESSION   XM_048367584
VERSION     XM_048367584.1
DBLINK      BioProject: PRJNA837248
KEYWORDS    RefSeq.
SOURCE      Perognathus longimembris pacificus (Pacific pocket mouse)
  ORGANISM  Perognathus longimembris pacificus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia;
            Castorimorpha; Heteromyidae; Perognathinae; Perognathus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_063178) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Perognathus longimembris pacificus
                                           Annotation Release 100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 9.0
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1854
                     /organism="Perognathus longimembris pacificus"
                     /mol_type="mRNA"
                     /isolate="PPM17"
                     /sub_species="pacificus"
                     /db_xref="taxon:214514"
                     /chromosome="18"
                     /sex="male"
                     /cell_line="21356"
                     /cell_type="fibroblast"
                     /tissue_type="trachea"
                     /dev_stage="adult"
                     /country="USA: Santa Margarita"
                     /collection_date="2019"
                     /collected_by="SDZWA"
     gene            1..1854
                     /gene="Vim"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 12 mRNAs, 37 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 12 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:125366861"
     CDS             120..1520
                     /gene="Vim"
                     /codon_start=1
                     /product="vimentin"
                     /protein_id="XP_048223541.1"
                     /db_xref="GeneID:125366861"
                     /translation="

MSTRSTSSSSYRRMFGGPGTGSRPSSGRSYVTTSTRAYSLGSALRPSTSRSFYASSPGGGYVQRSSAVRVRSAVPGVRLLQDSVDFSLADAINTEFKNTRTNEKVELQELNDRFANYIDKVRFLEQQNKILLAELEQLKGQGKSRLGDLYEEEMRELRRQVDQLTNEKARVEVERDNLGEDIMRLREKLQEEMLQREEAESTLQSFRQDVDNASLSRLDLERKVESLQEEIAFLKKLHDEEIQELQAQIQEQHVQIDMDVSKPDLTAALRDVRQQYESVAAKNLQEAEEWYKSKFADLSEAANRNNDALRQAKQESNEYRRQVQSLTCEVDALKGTNESLERQMREMEENFSLEAANYQDTIGRLQDEIQNMKEEMARHLREYQDLLNVKMALDIEIATYRKLLEGEESRISLPLPNFASLNLRETNLDSLPLVDTHSKRTLLIKTVETRDGQVINETSQHHDDLE"

     misc_feature    159..422
                     /gene="Vim"
                     /note="Intermediate filament head (DNA binding) region;
                     Region: Filament_head; pfam04732"
                     /db_xref="CDD:428095"
     misc_feature    423..1349
                     /gene="Vim"
                     /note="Intermediate filament protein; Region: Filament;
                     pfam00038"
                     /db_xref="CDD:425436"
     polyA_site      1854
                     /gene="Vim"
                     /experiment="COORDINATES: polyA evidence [ECO:0006239]"
ORIGIN      

tgtcgctctcgccccgggtccccgcgccagagacgcagcagacccccccgcatccaccgcgcgccctcgctcgcctcgccggtccgcagccgcccagcccgacgccgctccccgcagccatgtccacccgatcgacgtcctcctcctcctaccgcaggatgttcggaggccccggcaccgggagccgaccgagctccggccggagctacgtgaccacgtccacccgcgcgtacagcctgggcagcgcgctgcgccccagcaccagccggagcttctacgcctcgtccccgggcggcggctacgtgcagcgctcgtccgcggtgcgggtgcgcagcgcggtgcccggcgtgcgcctgctgcaagactcggtggacttctcgctggccgatgccatcaacaccgagttcaagaacacccgcaccaacgagaaggtggagctgcaggagctcaacgatcgcttcgccaactacatcgacaaggtgcgcttcttggagcagcagaacaagatcctgctggccgagctggagcagctcaagggccagggcaagtcgaggctgggggacctctacgaggaggagatgcgggagctgcgtcgccaggtggaccagctcaccaacgagaaagcgcgcgtggaagtggaacgggacaacctgggcgaggacatcatgcgactccgggagaaattgcaggaagagatgctgcagagggaggaagccgaaagcaccctgcagtctttcagacaggatgtggataatgcatccctgtcacgccttgaccttgagcgaaaagtggaatcattgcaagaagagattgcctttttgaagaagctacatgatgaggaaatccaggagctgcaggcccagatccaggagcagcatgtccagattgacatggatgtatctaagcctgacctcaccgcagctctgcgggacgttcgtcagcagtatgaaagtgtggctgccaagaacctccaggaggcggaggaatggtacaagtccaagtttgctgacctctcagaggctgctaaccgcaacaatgacgccctgcgccaggcgaagcaggagtccaatgagtaccggagacaagtgcagtccctcacctgcgaagtggacgcgcttaaaggaactaatgaatctctggaacgccagatgcgtgaaatggaagagaacttttctcttgaagctgctaactaccaagacactattggccgccttcaggacgagattcagaacatgaaggaagagatggctcgtcatcttcgtgaataccaagacttgctcaatgtgaagatggcccttgacattgagattgccacctacaggaagctgctggagggcgaggagagcaggatttctctgcctcttccaaactttgcctccttgaacctgagagaaacaaatctggattcactccctctggtcgacacccactctaaaagaacacttctgatcaagacggtggaaaccagagatggacaggttatcaatgaaacttctcagcatcatgatgatcttgaataaaaattgcgcatgtttggtgcagcaatatattaccagcaagcataaaaaaagagatccatatcttaaagaaacagctttcaagtgcctttctgcagttttccaggagtgcaagatagatttggaatagttataagctctagttcttaacaaccgacacttctaaaagatttaggtggaaaaaaaaaaacgtttacaacataatctagtttacaaagaagtcttgtgctagaatactttttaaaaagcctttttgaataccattaaaactgcctttgttcctccagcaagtatctgaccaagttgtttctgcttcaataaatctttggaaaaactc

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