LOCUS       XM_048306915            1779 bp    mRNA    linear   VRT 18-MAY-2022
DEFINITION  PREDICTED: Corvus hawaiiensis vimentin (VIM), mRNA.
ACCESSION   XM_048306915
VERSION     XM_048306915.1
DBLINK      BioProject: PRJNA838000
KEYWORDS    RefSeq.
SOURCE      Corvus hawaiiensis (hawaiian crow)
  ORGANISM  Corvus hawaiiensis
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Passeriformes; Corvoidea;
            Corvidae; Corvus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_063213) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Corvus hawaiiensis Annotation
                                           Release 100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 9.0
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1779
                     /organism="Corvus hawaiiensis"
                     /mol_type="mRNA"
                     /isolate="bCorHaw1"
                     /db_xref="taxon:134902"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /country="USA: University of Hawaii at Manoa"
                     /lat_lon="21.297467 N 157.818261 W"
                     /collection_date="2020-08-08"
                     /collected_by="Bryce Masuda"
     gene            1..1779
                     /gene="VIM"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 40 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 68 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:125327463"
     CDS             77..1456
                     /gene="VIM"
                     /codon_start=1
                     /product="vimentin"
                     /protein_id="XP_048162872.1"
                     /db_xref="GeneID:125327463"
                     /translation="

MSISTKNSSYRRMFGGSSRPSTGTRYITSSTRYSLGSALRPSSARYVSASPGGMYASKTTSVRLRSSMPPMRLHDSVDFSLADAINTEFKANRTNEKVELQELNDRFANYIDKVRFLEQQNKILLAELEQLKGKGTSRLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLADDIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLARLDLERKVESLQEEIVFLKKLHDEEIRELQAQLQEQHIQIDMDVSKPDLTAALRDVRQQYESVAAKNLQEAEEWYKSKFADLSEAANRNNDALRQAKQEANEYRRQIQSLTCEVDALKGSNESLERQMREMEENFAVEAANYQDTIGRLQDEIQNMKEEMARHLREYQDLLNVKMALDIEIATYRKLLEGEESRINMPIPTFAALNLRETNIESQPMVDTHSKRTLLIKTVETRDGQVINETSQHHDDLE"

     misc_feature    98..358
                     /gene="VIM"
                     /note="Intermediate filament head (DNA binding) region;
                     Region: Filament_head; pfam04732"
                     /db_xref="CDD:428095"
     misc_feature    359..1285
                     /gene="VIM"
                     /note="Intermediate filament protein; Region: Filament;
                     pfam00038"
                     /db_xref="CDD:425436"
     polyA_site      1779
                     /gene="VIM"
                     /experiment="COORDINATES: polyA evidence [ECO:0006239]"
ORIGIN      

gccaccgccctttttcgccgcacgccccagtggtcgcgctccgctcctggattacaaagcccgcgccgccgtcgctatgagcatcagcacgaaaaactcctcgtaccgccgcatgttcggcgggagcagccgccccagcaccggcacccgctacatcacgtccagcacccggtactcgctgggcagtgccctgcggcccagcagcgcccggtacgtgtccgcctcgcccggcggtatgtacgccagcaagacgacgtcggtgcggctgcggagcagcatgccgcccatgcggctccacgactccgtagacttctccctggccgacgctatcaacacggagtttaaggcgaaccgcactaatgagaaggttgagctgcaggagcttaatgaccgcttcgccaactacatcgacaaggtgcgcttcctggagcagcaaaacaagatcctgctggccgagctggagcagctcaagggcaagggcacgtcccgcctgggtgacctctacgaggaggagatgcgggagctgcggcgacaggtggaccagctcaccaacgacaaggcacgcgtggaagtggagcgggacaacctcgccgacgacatcatgcggctgcgggagaagttgcaagaggagatgcttcagagggaggaggccgagaacactctgcagtctttcagacaggatgttgacaatgcctctctggcacgtcttgatcttgagcgcaaagttgagtccctgcaagaggagattgtcttcttgaagaagcttcatgatgaggaaatccgagaattgcaggcccaactccaggaacagcacatccagattgatatggatgtttctaagcctgatcttactgctgccctgcgtgatgttcgccaacagtatgagagtgttgctgctaagaatcttcaggaagctgaagaatggtacaagtccaaatttgcagatctctctgaagctgctaacaggaacaacgatgccctgcgccaggccaagcaggaagccaatgagtaccgcagacagatccagtctctcacctgcgaagtcgatgctcttaagggaagcaatgagtccctggagcgccaaatgcgtgaaatggaggagaattttgctgttgaagctgctaactaccaagacactattggccgtctgcaggatgagatccagaacatgaaggaagagatggctcgccatctccgtgagtaccaggacctgctgaatgtaaagatggcccttgatattgagattgccacctacagaaaactgctggagggtgaagagagcaggattaacatgcctattccaacctttgctgctttgaacctgagagaaaccaacattgagtctcagccaatggttgacactcactcaaagagaacacttctaattaagaccgtcgaaactagagatggacaggttattaatgaaacttcccagcatcatgatgacttggagtaaagctgaagtgacgatgcatacttactaaaggagaaattcttaccagcaagattgaaaaagtccatgtcttaaaggaagaaacagctttcaagtgcctttctgcagtttttccatgagcgcaagatgattatgctaggaaataggtcttagatcttacaaactgactccccctgaaggattagagtttacaatggagcctagtttacaaatagcaatatcttgtgctgcaatactgtttttaagtatctgaattcaataaaactgctttttccagcacagtatgagcaacctgtcgctacttcaataaatctttggaaaatggc

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