2024-04-18 12:40:38, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_048164398 1768 bp mRNA linear VRT 13-MAY-2022 DEFINITION PREDICTED: Megalobrama amblycephala vimentin like (viml), mRNA. ACCESSION XM_048164398 VERSION XM_048164398.1 DBLINK BioProject: PRJNA835491 KEYWORDS RefSeq. SOURCE Megalobrama amblycephala (Wuchang bream) ORGANISM Megalobrama amblycephala Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Xenocyprididae; Xenocypridinae; Megalobrama. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_063060) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Megalobrama amblycephala Annotation Release 100 Annotation Version :: 100 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 9.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..1768 /organism="Megalobrama amblycephala" /mol_type="mRNA" /isolate="DHTTF-2021" /db_xref="taxon:75352" /sex="female" /tissue_type="blood" /linkage_group="LG17" gene 1..1768 /gene="viml" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 103 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 23 samples with support for all annotated introns" /db_xref="GeneID:125251401" CDS 129..1469 /gene="viml" /codon_start=1 /product="vimentin like" /protein_id="XP_048020355.1" /db_xref="GeneID:125251401" /translation="
MSTSSYRKRFGDVSRSSGFSSRQTSSLMRSQVSFGVSSAPVIYASKSSKLRSSAAMPRLSSETVDFNLSDALNKEFKVNRLNEKAQMQSLNDRFASYIEKVRFLEQQNKILCAELEQLRGQRSSSIADLYEEEMRDLRRQVDQLTTEKAHVEVARDNMAEDIERLREKLQNEILQREDAENSMRSFRQDVDSAALARVDLERKVESLQDEIAFLKKLHDEELAELQAQIQGQQVQVDMDIAKPDLTAALRDVRLQYENLASKNIQESEDWYKSKFADLTEAANKNNEALRLAKQEANEYRRQVQALTCEVEALKGTNESLERQMREMEENFGMESSSFQDNISRLEEDIRNMKDEMSRHLREYQDLLNVKMALDIEIATYRKLLEGEESRITTPLPNFPSFSLREAMLESKPVTENIITKKVLIKTIETRDGQVINESTQNHDDLE"
misc_feature 129..368 /gene="viml" /note="Intermediate filament head (DNA binding) region; Region: Filament_head; pfam04732" /db_xref="CDD:428095" misc_feature 372..1298 /gene="viml" /note="Intermediate filament protein; Region: Filament; pfam00038" /db_xref="CDD:425436" polyA_site 1768 /gene="viml" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN
agcgttatgtgatttgcataatgacttgactataaatgatgcttcctctcacactgtcgctccccgtttgggacagttcatgaagacagaaactgtgcgcagagctacaacagatattaaagttcacgatgtcaacctcctcgtacagaaagcgatttggagatgtgagccggagcagcgggttctccagccgccagacgtccagtctcatgcgctcacaggtgtctttcggcgtctcctcggctccggttatttacgcgtcgaagagctccaaactccgaagtagcgcggcgatgccacgactgagctctgagactgttgattttaatctctcggatgccttaaataaggaattcaaggtgaatcgtctcaatgaaaaggcgcagatgcagtcactaaacgaccgcttcgccagttacatcgagaaggtgcgtttcctggagcagcagaacaagatcctgtgcgcggagctggagcagctgcggggtcagagatcttccagcatcgctgatctctatgaggaggagatgcgagacttgaggcgacaggtggaccagctcaccacggagaaagcacacgtggaagtggcgcgagacaacatggcagaagatatagagcgactcagagagaaactgcagaatgagattctgcagcgagaagatgcagagaacagcatgaggagtttcagacaggatgtggacagcgctgctcttgctcgagtggatctggagaggaaggtggagtctctccaggatgaaattgccttcctgaaaaagctccacgatgaggagctggctgagctgcaggcacagatccagggccagcaggtgcaggtggatatggacattgctaaacctgatctgacagctgctctgagagacgtcagactgcagtatgagaacctggcatccaaaaacatccaggagtcagaggattggtacaaatccaagtttgctgacctgactgaagcggctaacaagaataatgaagctctacgattggccaagcaggaggccaatgaataccgccgacaggtgcaggcgctcacctgcgaggtggaagcactcaagggaacaaatgaatctctggagcgtcagatgagggagatggaggagaactttggaatggagtcttctagtttccaggataacatctctcggctggaggaggacatacggaacatgaaggacgagatgtcaagacacctgcgtgagtatcaggatttgctcaatgtcaagatggccctggacatcgagatcgccacctacaggaaacttctagagggggaggagagcagaattacaacccctcttccaaatttcccctccttcagtctgagagaagcgatgctcgagtccaagcctgttactgaaaatataattactaagaaagttcttattaagaccattgagaccagagatggccaggtgatcaatgagtccactcagaaccacgatgatctggagtgatggagggaaatctcctaccattatcatccactgcagcacctttttgtatcccaactaccaacctaatctaatgtgaacaacccacattaacctgcttcaaagtgcctttttatctgccaaaaatataccttaagtatttgagccagtagagaacctgtagttttgctcagagtgagaacacatgacctttagcgtactgtgaatcttttcattgtctgaacctgcatttatcttccacacagcatttctgagccaacatgcttcaataaaaataatcaaagaagtgtttgtattcttaa
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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