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2024-03-30 00:30:33, GGRNA.v2 : RefSeq release 222 (Jan, 2024)

LOCUS       XM_047352943            2050 bp    mRNA    linear   VRT 03-APR-2022
DEFINITION  PREDICTED: Girardinichthys multiradiatus vimentin-related 2
            (vimr2), mRNA.
ACCESSION   XM_047352943
VERSION     XM_047352943.1
DBLINK      BioProject: PRJNA821872
KEYWORDS    RefSeq.
SOURCE      Girardinichthys multiradiatus
  ORGANISM  Girardinichthys multiradiatus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Actinopterygii; Neopterygii; Teleostei; Neoteleostei;
            Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes;
            Goodeidae; Girardinichthys.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_061815) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Girardinichthys multiradiatus
                                           Annotation Release 100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 9.0
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2050
                     /organism="Girardinichthys multiradiatus"
                     /mol_type="mRNA"
                     /isolate="DD_20200921_A"
                     /db_xref="taxon:208333"
                     /chromosome="23"
                     /sex="male"
                     /tissue_type="mix of soft organs"
                     /dev_stage="adult"
     gene            1..2050
                     /gene="vimr2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 15 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:124860001"
     CDS             24..1184
                     /gene="vimr2"
                     /codon_start=1
                     /product="low molecular weight neuronal intermediate
                     filament"
                     /protein_id="XP_047208899.1"
                     /db_xref="GeneID:124860001"
                     /translation="
MAMLRVSSYRKLFEDNRWSPNGGSRLQRAGLYRASGRRAAVDRSVCDKLDFGATSALNKEGLDRFVQDRTTIAALNDRLVKLIELAHCLEEENNSLECQITDLEENLNGQHASPSITPTVAMAECSLEAVVERLHKQRDEIVCDTEELKEELECLHKEYEKAVHQRVLVQQGQQNVAEVVDAVTAECLALREQVAVYEEQLANMETQHKMEVESLLQPDERALATAAIRFGSPDITPALDVKEYHCQLAESLQMEFGTPACGEGDGKKMEMGQTDGSVVKDPTEITDVDEVKALISELQKELNELEKNNEELLDEVEVKRDAYMDEVAELEFTITEMKQQKADLKSQMKEQCQEYKELLTEKMARGMEIAAYRSLVEEEEVRLCSL"
     misc_feature    36..233
                     /gene="vimr2"
                     /note="Intermediate filament head (DNA binding) region;
                     Region: Filament_head; pfam04732"
                     /db_xref="CDD:428095"
     misc_feature    222..1169
                     /gene="vimr2"
                     /note="Intermediate filament protein; Region: Filament;
                     pfam00038"
                     /db_xref="CDD:425436"
     polyA_site      2050
                     /gene="vimr2"
                     /experiment="COORDINATES: polyA evidence [ECO:0006239]"
ORIGIN      
gaatcctgaactgatccggagccatggccatgctcagagtgtcttcttaccgcaagctgtttgaggacaaccggtggagtccaaacggagggtcgaggttgcagcgtgcaggactttatcgggcctctggcaggcgtgcagctgttgacaggtctgtctgtgataaattagacttcggagcaaccagtgctctgaacaaagagggtctggaccggtttgtccaggaccggaccaccatcgctgcccttaacgaccgcctggtcaaacttattgagttggctcattgtttggaggaagagaataactctcttgaatgccagatcactgacctggaggaaaatctgaacggtcaacacgcctcccccagcatcacccccactgtagcaatggcagagtgcagtttggaagccgtggtggaaagactacacaaacagagggatgagattgtttgtgacacagaggaactgaaggaagagcttgaatgtctacataaagagtacgagaaggctgtacatcagagggtcctcgtacagcaggggcaacaaaatgttgcagaggtggtagatgctgtgacagcagagtgtttggcgctgagggagcaagtggctgtctacgaggaacagctggccaacatggagacccagcacaagatggaagtggagagcctgctgcagccagatgaaagggctctggctacagctgcgattaggtttggcagccctgacatcactccagccttggatgtaaaggagtaccactgccagctggcagagagcctccagatggagtttgggacacccgcctgtggtgaaggtgatggaaagaaaatggaaatgggacaaactgatgggtcagtggtcaaagacccaacggagataaccgatgtggacgaggtgaaggctctgatttcagagctgcagaaggagcttaatgagcttgagaagaataatgaggagttgctggatgaagttgaggtgaagagggatgcttacatggatgaggttgcagagttagagtttactataacagaaatgaagcagcagaaggctgacctcaaatcccagatgaaagagcagtgccaggagtacaaggagctgcttactgagaagatggcaagaggcatggagatcgcggcctacaggagtctggtggaggaagaggaggtgagactgtgcagcctgtgacttggactgatcagatggatttctgctggattctcccctgacacatggattagaaaacagaccaaaaaacatgagaaactgacccaaaatgagcaccagtgtaccagttctagccggtgtttgcttatcatgacggattcatgctgtctggaggactgagccatgccgctgatagcaggtcgaatgcagatgacctggagcctcccaggaaagatggaactgtctgaaacttgttggaggctcagggcttcagtgtctggcactgatatttccttaagtggggtttatctcctccagctcgctgattcataaatgtttgttccctttttgtaaaacaagattcacttaaacgcagacactcaccaagttaggtatcacagagccactcctgctctgatcccacctcgtccgtcaatcaaactccgtctgattaccacctcttaacctttgaccctctcgctgtaatcaaacacactgacaggctcctcctcagtcactgaaagcgtcccaccttgcttttgtttttacagtcatgtgttcatactggtttttaaaagtcaactgctcaacgcaccgtgtttgctttgcaaatggctcgtgaagttgtttttgtgcaaccttctctaaatgagcacctgcatctttccacaagaaaactctgagtgattcattatttcctctttgaaaagcactgtcccaatttgatgtcatttcatgaataagtgtttggtaatgcattcctcactaattttttccttactgtcaacattgcatcaaagctgcctgctatcaatcatccgcctctggccaagcattaaaatgtacttgggattcagattaaataaaactagttgcttgaaaaatca
//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]