GGRNA ver.2 Home | Help | Advanced search    Previous release (v1)

2024-11-01 08:28:46, GGRNA.v2 : RefSeq release 226 (Sep, 2024)

LOCUS       XM_047297341            2544 bp    mRNA    linear   PLN 28-MAR-2022
DEFINITION  PREDICTED: Vigna umbellata protein NETWORKED 4B-like
            (LOC124824825), mRNA.
ACCESSION   XM_047297341
VERSION     XM_047297341.1
DBLINK      BioProject: PRJNA819033
KEYWORDS    RefSeq.
SOURCE      Vigna umbellata
  ORGANISM  Vigna umbellata
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
            Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50
            kb inversion clade; NPAAA clade; indigoferoid/millettioid clade;
            Phaseoleae; Vigna.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_025902602) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Vigna umbellata Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 9.0
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2544
                     /organism="Vigna umbellata"
                     /mol_type="mRNA"
                     /cultivar="VRB-3 Himshakti"
                     /db_xref="taxon:87088"
                     /chromosome="Unknown"
                     /tissue_type="leaf"
                     /dev_stage="Seedling"
                     /geo_loc_name="India"
     gene            1..2544
                     /gene="LOC124824825"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 13 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 11 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:124824825"
     CDS             679..2370
                     /gene="LOC124824825"
                     /codon_start=1
                     /product="protein NETWORKED 4B-like"
                     /protein_id="XP_047153297.1"
                     /db_xref="GeneID:124824825"
                     /translation="
MMKNQPSQWWWLESHSNTRRSPWLQSTLTELNEKTKAMLKLIEEDADSFAQRAEMYYKKRPQLVSMVEDFYRTHRSLAERYDQIAGIRQQKTGGSPFSPLKHHQPEKLISFANDCYDSYSESCDVEESGESEIDDPEQEEDEDSIFNNCAELEEVQFERLGEENKDHKGQNKQKYNIYEAVMLREEIEQLRKENRVQKDELDRKSITFVELMMLREEIEQLRKENRAQKDELNQKDIICGEAMMLREEIEQLGKENRVLKDELSQKSIICGEVMMLREEIEQFRKENRAQKHELNQKDIICGKTMMPREEIEQLCKENIVLKDELNQKSIICGEVMMLKEEIEQLRKENRAQKDELHKKDNICSEIMMLREEIGQLGKENAALKDELNKKYIICGEIMMLREEIEQLRKYIRGQKNELHQKGIKCEVTMSREEKENRVKNDELNPEDSVCGEVVMLREEIKRLEKDERALKGTLSGEVMKLRQENSAQKDHLKQKDQEKIEVIRHLSLAIDMLKQENIRMRSFIAKESANKWKNPFGLKNFMGSLSEQLFNGITNNQPSLVAL"
     misc_feature    703..924
                     /gene="LOC124824825"
                     /note="KIP1-like protein; Region: KIP1; pfam07765"
                     /db_xref="CDD:429647"
     misc_feature    <1213..>2175
                     /gene="LOC124824825"
                     /note="chromosome segregation protein SMC, common
                     bacterial type; Region: SMC_prok_B; TIGR02168"
                     /db_xref="CDD:274008"
     polyA_site      2544
                     /gene="LOC124824825"
                     /experiment="COORDINATES: polyA evidence [ECO:0006239]"
ORIGIN      
aaaaaaaataattactagtcaaacaaattttattgccaccacaataatttagactcaaaatgaaacagccacccaagacagtgtcaccacaaactgatctgtcactagaaaatgcgtttattttgaattagtttgtagtttgggttcgaccgttgcaccaaaatttttgtcttcacatcacgctcctccgattttccatccaagtcccacgccagatactgcttttgccaaatcagaattatcgctaatcatcaatttaaataatgaattcgtcaattaagcactagttattgcattagtgaagctctaatttttctcataatcttcgtgcttttcaatttaaaccttccatagattatggcagcgggatcattgactgaactgtagcattttgaatttgagtgtgtttgtatgaattattactattatttttggtcgaggcaaagggttgattgtgaaatgttgagtagacgtgtcgtaagatgataggtggagggtttcagatgagacaaatcaagaatttcaaaaccgaaaacaacagtatatataaaatggttctattctaatctcttgctcttcgtgaactctaattccatcgcaggcggtggtggcaagcattgcattaattcatgctcttggtgttcgtgataacatagacaactgaggaggagggctaaaatgatgaagaatcaaccgtcacagtggtggtggcttgagagccacagtaacacaagacgatccccttggcttcaatccactctcacagagctaaatgagaagacaaaggcaatgttaaaactaattgaagaagatgcagattcctttgcccaacgtgctgagatgtattacaagaagagaccacaacttgtgagcatggttgaagacttctataggacacatcgatcattagctgagcggtatgatcaaatcgctggaattcgtcagcagaagactggagggtcccccttttctccactcaagcatcatcaaccagagaagttgataagttttgcgaatgactgttatgatagctattctgagagttgtgatgtagaggagtctggggaatctgaaattgatgatcctgagcaagaagaggatgaggattccatattcaataactgtgcagaactggaggaagttcagtttgagagacttggtgaagaaaacaaggatcataagggtcagaacaagcaaaaatataacatttacgaagcagtgatgttgagggaagaaatagagcaactcagaaaagagaacagggttcagaaggatgaactcgaccggaaaagcatcacttttgttgaattaatgatgctgagggaagaaatagagcaactaagaaaagagaatagagcacagaaggatgaactcaaccagaaagatatcatttgtggtgaagcaatgatgttgagggaagaaatagaacaactcggtaaagaaaatagagttctgaaggatgaactaagccagaaaagtatcatttgtggtgaagtaatgatgttgagggaagaaatagagcaattcagaaaagagaatagagcgcagaagcatgaactcaaccagaaagatatcatttgtggtaaaacaatgatgccgagggaagaaatagagcaactctgtaaagagaatatagttctgaaggatgaactaaaccagaaaagtatcatttgtggtgaagtaatgatgttgaaggaagaaatagagcaactcaggaaagagaatagagcgcagaaggatgaactccacaagaaagacaacatttgcagtgaaataatgatgttgagggaagaaatagggcaattgggaaaagagaatgcagcgctgaaggatgaactcaacaagaaatatatcatttgtggagaaataatgatgttgagggaagaaatagaacaactcaggaaatatattagagggcagaagaatgaactccaccagaaaggtatcaagtgtgaagtaacgatgtcgagggaagaaaaagagaatagagtgaagaatgatgaactaaacccagaagacagcgtttgtggtgaagtagtgatgttaagggaagaaataaaacgacttgaaaaagatgaaagagcactaaaaggtaccctttctggtgaagtaatgaagttaaggcaggagaatagcgcgcagaaggaccatcttaagcaaaaagaccaagagaaaatagaggtgataagacacctgagtttagctatagatatgctgaagcaggagaacataaggatgagaagcttcattgctaaggaatctgccaacaaatggaagaatccatttgggttaaagaatttcatgggatcattatcagagcagttgtttaatggaattacaaataatcaacctagtcttgtagctctctagataaggttcacagagtaaataactaagttttgtagaacaatattaaaagagacctatgtacatgttatggggacctgctcaagtaacctacagatcttgtatacagtttagtatattcctaactaatccaagaccgagtatctagtggatttcctagacacttgtttttctaca
//

by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).

If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]