2024-11-01 08:28:46, GGRNA.v2 : RefSeq release 226 (Sep, 2024)
LOCUS XM_047297341 2544 bp mRNA linear PLN 28-MAR-2022 DEFINITION PREDICTED: Vigna umbellata protein NETWORKED 4B-like (LOC124824825), mRNA. ACCESSION XM_047297341 VERSION XM_047297341.1 DBLINK BioProject: PRJNA819033 KEYWORDS RefSeq. SOURCE Vigna umbellata ORGANISM Vigna umbellata Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Vigna. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_025902602) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Vigna umbellata Annotation Release 100 Annotation Version :: 100 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 9.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2544 /organism="Vigna umbellata" /mol_type="mRNA" /cultivar="VRB-3 Himshakti" /db_xref="taxon:87088" /chromosome="Unknown" /tissue_type="leaf" /dev_stage="Seedling" /geo_loc_name="India" gene 1..2544 /gene="LOC124824825" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 13 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 11 samples with support for all annotated introns" /db_xref="GeneID:124824825" CDS 679..2370 /gene="LOC124824825" /codon_start=1 /product="protein NETWORKED 4B-like" /protein_id="XP_047153297.1" /db_xref="GeneID:124824825" /translation="
MMKNQPSQWWWLESHSNTRRSPWLQSTLTELNEKTKAMLKLIEEDADSFAQRAEMYYKKRPQLVSMVEDFYRTHRSLAERYDQIAGIRQQKTGGSPFSPLKHHQPEKLISFANDCYDSYSESCDVEESGESEIDDPEQEEDEDSIFNNCAELEEVQFERLGEENKDHKGQNKQKYNIYEAVMLREEIEQLRKENRVQKDELDRKSITFVELMMLREEIEQLRKENRAQKDELNQKDIICGEAMMLREEIEQLGKENRVLKDELSQKSIICGEVMMLREEIEQFRKENRAQKHELNQKDIICGKTMMPREEIEQLCKENIVLKDELNQKSIICGEVMMLKEEIEQLRKENRAQKDELHKKDNICSEIMMLREEIGQLGKENAALKDELNKKYIICGEIMMLREEIEQLRKYIRGQKNELHQKGIKCEVTMSREEKENRVKNDELNPEDSVCGEVVMLREEIKRLEKDERALKGTLSGEVMKLRQENSAQKDHLKQKDQEKIEVIRHLSLAIDMLKQENIRMRSFIAKESANKWKNPFGLKNFMGSLSEQLFNGITNNQPSLVAL"
misc_feature 703..924 /gene="LOC124824825" /note="KIP1-like protein; Region: KIP1; pfam07765" /db_xref="CDD:429647" misc_feature <1213..>2175 /gene="LOC124824825" /note="chromosome segregation protein SMC, common bacterial type; Region: SMC_prok_B; TIGR02168" /db_xref="CDD:274008" polyA_site 2544 /gene="LOC124824825" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN
aaaaaaaataattactagtcaaacaaattttattgccaccacaataatttagactcaaaatgaaacagccacccaagacagtgtcaccacaaactgatctgtcactagaaaatgcgtttattttgaattagtttgtagtttgggttcgaccgttgcaccaaaatttttgtcttcacatcacgctcctccgattttccatccaagtcccacgccagatactgcttttgccaaatcagaattatcgctaatcatcaatttaaataatgaattcgtcaattaagcactagttattgcattagtgaagctctaatttttctcataatcttcgtgcttttcaatttaaaccttccatagattatggcagcgggatcattgactgaactgtagcattttgaatttgagtgtgtttgtatgaattattactattatttttggtcgaggcaaagggttgattgtgaaatgttgagtagacgtgtcgtaagatgataggtggagggtttcagatgagacaaatcaagaatttcaaaaccgaaaacaacagtatatataaaatggttctattctaatctcttgctcttcgtgaactctaattccatcgcaggcggtggtggcaagcattgcattaattcatgctcttggtgttcgtgataacatagacaactgaggaggagggctaaaatgatgaagaatcaaccgtcacagtggtggtggcttgagagccacagtaacacaagacgatccccttggcttcaatccactctcacagagctaaatgagaagacaaaggcaatgttaaaactaattgaagaagatgcagattcctttgcccaacgtgctgagatgtattacaagaagagaccacaacttgtgagcatggttgaagacttctataggacacatcgatcattagctgagcggtatgatcaaatcgctggaattcgtcagcagaagactggagggtcccccttttctccactcaagcatcatcaaccagagaagttgataagttttgcgaatgactgttatgatagctattctgagagttgtgatgtagaggagtctggggaatctgaaattgatgatcctgagcaagaagaggatgaggattccatattcaataactgtgcagaactggaggaagttcagtttgagagacttggtgaagaaaacaaggatcataagggtcagaacaagcaaaaatataacatttacgaagcagtgatgttgagggaagaaatagagcaactcagaaaagagaacagggttcagaaggatgaactcgaccggaaaagcatcacttttgttgaattaatgatgctgagggaagaaatagagcaactaagaaaagagaatagagcacagaaggatgaactcaaccagaaagatatcatttgtggtgaagcaatgatgttgagggaagaaatagaacaactcggtaaagaaaatagagttctgaaggatgaactaagccagaaaagtatcatttgtggtgaagtaatgatgttgagggaagaaatagagcaattcagaaaagagaatagagcgcagaagcatgaactcaaccagaaagatatcatttgtggtaaaacaatgatgccgagggaagaaatagagcaactctgtaaagagaatatagttctgaaggatgaactaaaccagaaaagtatcatttgtggtgaagtaatgatgttgaaggaagaaatagagcaactcaggaaagagaatagagcgcagaaggatgaactccacaagaaagacaacatttgcagtgaaataatgatgttgagggaagaaatagggcaattgggaaaagagaatgcagcgctgaaggatgaactcaacaagaaatatatcatttgtggagaaataatgatgttgagggaagaaatagaacaactcaggaaatatattagagggcagaagaatgaactccaccagaaaggtatcaagtgtgaagtaacgatgtcgagggaagaaaaagagaatagagtgaagaatgatgaactaaacccagaagacagcgtttgtggtgaagtagtgatgttaagggaagaaataaaacgacttgaaaaagatgaaagagcactaaaaggtaccctttctggtgaagtaatgaagttaaggcaggagaatagcgcgcagaaggaccatcttaagcaaaaagaccaagagaaaatagaggtgataagacacctgagtttagctatagatatgctgaagcaggagaacataaggatgagaagcttcattgctaaggaatctgccaacaaatggaagaatccatttgggttaaagaatttcatgggatcattatcagagcagttgtttaatggaattacaaataatcaacctagtcttgtagctctctagataaggttcacagagtaaataactaagttttgtagaacaatattaaaagagacctatgtacatgttatggggacctgctcaagtaacctacagatcttgtatacagtttagtatattcctaactaatccaagaccgagtatctagtggatttcctagacacttgtttttctaca
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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