2024-11-01 08:12:36, GGRNA.v2 : RefSeq release 226 (Sep, 2024)
LOCUS XM_045971522 2787 bp mRNA linear PLN 15-JAN-2022 DEFINITION PREDICTED: Trifolium pratense protein NETWORKED 4B-like (LOC123919502), transcript variant X2, mRNA. ACCESSION XM_045971522 VERSION XM_045971522.1 DBLINK BioProject: PRJNA796348 KEYWORDS RefSeq. SOURCE Trifolium pratense ORGANISM Trifolium pratense Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; Hologalegina; IRL clade; Trifolieae; Trifolium. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_060059) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Trifolium pratense Annotation Release 100 Annotation Version :: 100 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 9.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2787 /organism="Trifolium pratense" /mol_type="mRNA" /cultivar="HEN17-A07" /db_xref="taxon:57577" /tissue_type="leaves" /dev_stage="Mature plant" /geo_loc_name="USA: Madison, WI" /linkage_group="LG1" gene 1..2787 /gene="LOC123919502" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 13 long SRA reads, 5 Proteins, and 83% coverage of the annotated genomic feature by RNAseq alignments, including 15 samples with support for all annotated introns" /db_xref="GeneID:123919502" CDS 373..2142 /gene="LOC123919502" /codon_start=1 /product="protein NETWORKED 4B-like" /protein_id="XP_045827478.1" /db_xref="GeneID:123919502" /translation="
MTEITMKNQLSQPHWWWLDENTTVRRSTWLQSTVTELNEKTKTMLKLIEEDADSFAQRAEMFYKKRPELVSMVEDFYRRHRLLAERYDQVRPESGIRLLNPPASCKHSQSEKLTSFDDDRGYDSYSYSESCDVEESVESEIDDPEHEEEEHEEVRSVAANDVMKLRKEIEILGEKKKGHKDQIKQIQKDDMLDVMKLREEIERSEKENEAHKDELKQEISISNEVVMKLREEIEQFQQKDTIHDHQVMKLREEIQRLNKENEALKDELKQKDTVSNEVMKLREKIERLEKENEAQKNEFKQKDTVSNEVMKFREKIERLEKENEAKKDELKQKDTISNEVMKFSEKIEQLEKENEAQKDELKQKNTISDEVMKLKEQIEQLKKENEAQKDELKQKATICNEVMKLREELEETHKKENEAQKDELKEEDTTICDEVMKLRKEIERLEKENEAQNDELKEKHIICNEVLKLREELERHREENEARKDELMHKLTIYDEVMMLKEERESFREENRTQKDDLKQKDKEKIEVIRQLSSTIDLLKQENVKMRNFIAKESAKKWKTPFKFNKLIGTFSEKLLNGIPKTKPSLVAL"
misc_feature 415..636 /gene="LOC123919502" /note="KIP1-like protein; Region: KIP1; pfam07765" /db_xref="CDD:429647" misc_feature <958..>1749 /gene="LOC123919502" /note="Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; Region: Smc; COG1196" /db_xref="CDD:440809" ORIGIN
aatcaattaataataattattaaaatctccatattaagcagcattatttatttaccaaaataatctcctttaggtttcccactttccctccctctcttataatttgaaaagaaaccccccacagcacagcaccctctgtctctactgaaacccaagtcaaacaaattttgaatctcagtaactgttcaactcgaggattttgctgtctatgtcaaatacacgtgtttcatcatcactggttcacacctttccaataaaacaaactaaatcaaaaccaaaaactctgtttctagtttctaccgctctctgcaatttgagtgaggcttttggtattggtgatatctaagtaagaagaaagtgaggaagaaggtgatgactgaaattactatgaagaatcaactttcacagccacactggtggtggcttgatgaaaacaccaccgttagaagatcaacatggcttcaatctacagtcactgagctgaatgagaagacaaagacaatgttaaaattaattgaagaagatgcagattccttcgcgcaacgagctgagatgttttacaagaagagaccagagcttgtgagcatggttgaagatttctataggagacaccgcttgttagctgaacggtatgatcaagtcagacctgaatccggaattcgcctgctcaaccctcctgcttcatgtaagcattctcaatcagagaagttaacgagttttgatgatgatcgtggttatgatagctatagctattctgagagttgtgatgtagaggaatctgtggaatctgaaattgatgatcctgagcacgaagaggaagaacatgaggaagttcggtctgtggctgcaaatgatgtgatgaagctgaggaaggaaattgagatacttggtgaaaagaagaagggtcataaggatcaaatcaagcaaattcaaaaagatgacatgcttgatgtaatgaagttgagggaagaaatagagcgatccgagaaagagaatgaagcacataaggatgaactcaagcaggaaatttccatttctaatgaagtagtaatgaagttgagggaagaaatagaacaattccagcagaaagataccattcacgatcatcaagtaatgaagttgagggaagagatacaacgactcaataaagagaatgaagcactgaaggatgaactcaagcagaaagacaccgtttctaatgaagtaatgaagttgagggaaaagatagagcgactcgagaaagagaatgaagcgcagaagaatgaattcaagcagaaagacaccgtttctaatgaagtaatgaagttcagggaaaagatagagcgactcgagaaagaaaatgaagcaaagaaggatgaactcaagcagaaagacaccatttctaatgaagtaatgaagttcagtgaaaagatagaacaactcgagaaagagaatgaagcacagaaggatgaactgaagcagaaaaacaccatttctgatgaagtaatgaagttgaaggaacaaatagaacaactcaagaaagagaatgaggcacaaaaggatgaactcaagcagaaagctacaatttgcaatgaagtaatgaagttgagggaagaattagaagaaacacacaagaaagagaatgaagctcagaaagatgaactcaaggaggaagataccaccatttgtgatgaagtaatgaagttgaggaaagagatagaacgactcgagaaagagaatgaagcacagaatgatgaactcaaggagaaacatatcatttgcaatgaagtgctgaagttgagagaagaattagaaagacacagggaagagaatgaagctcgaaaagatgaactcatgcataaacttaccatttatgatgaagtaatgatgttgaaggaagagagggagagttttagagaagagaataggacacagaaggatgatctgaaacagaaagacaaagagaaaatagaggtaataagacagctcagttcaacaatagatttgctgaagcaggagaatgtaaagatgagaaacttcatagctaaggaatctgccaaaaaatggaagacaccatttaagttcaacaaactcattggaacattctcagagaaattgcttaatgggattccaaagactaagcctagtctggtagctctctagatatggttcaaaaatttaaaataccatgctgttctataaaacaatattataaagatatattgatacatatgttagggccttatcagaatttccttagaatcaattcaatatgtttcttagtgtttaaatgctagtgtactttcttatagaactatatgaataattttttaccaatattccaattgttacaattttttattcatttatctatactgtattcaacccaatgtgcccatctcactttttcatgccttaaaagtttaatttccactactctatcttaatgcaaagtgcaccaaaagaagagtcattaaaagcttcttttttgccacataagagagcattcattgttcaattgattgctaaagccaatgatctttataaataaataggaagttgtccctgcattcctaaaatctatggtatattcctcactttaaggctattatataaatagatatcaaaagaatatagtaataaaaacaaagtaacatacactaaaaaacaaagagtaaagctttagacacctcatgttttctatgtcacttatctggaattcgaatagtactggtcattcttaacttacctctaatggaactctggattattagggtcatctttccgtaaaaatcatagggttaagac
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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