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2024-11-01 08:12:36, GGRNA.v2 : RefSeq release 226 (Sep, 2024)

LOCUS       XM_045971522            2787 bp    mRNA    linear   PLN 15-JAN-2022
DEFINITION  PREDICTED: Trifolium pratense protein NETWORKED 4B-like
            (LOC123919502), transcript variant X2, mRNA.
ACCESSION   XM_045971522
VERSION     XM_045971522.1
DBLINK      BioProject: PRJNA796348
KEYWORDS    RefSeq.
SOURCE      Trifolium pratense
  ORGANISM  Trifolium pratense
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
            Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50
            kb inversion clade; NPAAA clade; Hologalegina; IRL clade;
            Trifolieae; Trifolium.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_060059) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Trifolium pratense Annotation
                                           Release 100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 9.0
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2787
                     /organism="Trifolium pratense"
                     /mol_type="mRNA"
                     /cultivar="HEN17-A07"
                     /db_xref="taxon:57577"
                     /tissue_type="leaves"
                     /dev_stage="Mature plant"
                     /geo_loc_name="USA: Madison, WI"
                     /linkage_group="LG1"
     gene            1..2787
                     /gene="LOC123919502"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 13 long SRA reads, 5 Proteins, and
                     83% coverage of the annotated genomic feature by RNAseq
                     alignments, including 15 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:123919502"
     CDS             373..2142
                     /gene="LOC123919502"
                     /codon_start=1
                     /product="protein NETWORKED 4B-like"
                     /protein_id="XP_045827478.1"
                     /db_xref="GeneID:123919502"
                     /translation="
MTEITMKNQLSQPHWWWLDENTTVRRSTWLQSTVTELNEKTKTMLKLIEEDADSFAQRAEMFYKKRPELVSMVEDFYRRHRLLAERYDQVRPESGIRLLNPPASCKHSQSEKLTSFDDDRGYDSYSYSESCDVEESVESEIDDPEHEEEEHEEVRSVAANDVMKLRKEIEILGEKKKGHKDQIKQIQKDDMLDVMKLREEIERSEKENEAHKDELKQEISISNEVVMKLREEIEQFQQKDTIHDHQVMKLREEIQRLNKENEALKDELKQKDTVSNEVMKLREKIERLEKENEAQKNEFKQKDTVSNEVMKFREKIERLEKENEAKKDELKQKDTISNEVMKFSEKIEQLEKENEAQKDELKQKNTISDEVMKLKEQIEQLKKENEAQKDELKQKATICNEVMKLREELEETHKKENEAQKDELKEEDTTICDEVMKLRKEIERLEKENEAQNDELKEKHIICNEVLKLREELERHREENEARKDELMHKLTIYDEVMMLKEERESFREENRTQKDDLKQKDKEKIEVIRQLSSTIDLLKQENVKMRNFIAKESAKKWKTPFKFNKLIGTFSEKLLNGIPKTKPSLVAL"
     misc_feature    415..636
                     /gene="LOC123919502"
                     /note="KIP1-like protein; Region: KIP1; pfam07765"
                     /db_xref="CDD:429647"
     misc_feature    <958..>1749
                     /gene="LOC123919502"
                     /note="Chromosome segregation ATPase Smc [Cell cycle
                     control, cell division, chromosome partitioning]; Region:
                     Smc; COG1196"
                     /db_xref="CDD:440809"
ORIGIN      
aatcaattaataataattattaaaatctccatattaagcagcattatttatttaccaaaataatctcctttaggtttcccactttccctccctctcttataatttgaaaagaaaccccccacagcacagcaccctctgtctctactgaaacccaagtcaaacaaattttgaatctcagtaactgttcaactcgaggattttgctgtctatgtcaaatacacgtgtttcatcatcactggttcacacctttccaataaaacaaactaaatcaaaaccaaaaactctgtttctagtttctaccgctctctgcaatttgagtgaggcttttggtattggtgatatctaagtaagaagaaagtgaggaagaaggtgatgactgaaattactatgaagaatcaactttcacagccacactggtggtggcttgatgaaaacaccaccgttagaagatcaacatggcttcaatctacagtcactgagctgaatgagaagacaaagacaatgttaaaattaattgaagaagatgcagattccttcgcgcaacgagctgagatgttttacaagaagagaccagagcttgtgagcatggttgaagatttctataggagacaccgcttgttagctgaacggtatgatcaagtcagacctgaatccggaattcgcctgctcaaccctcctgcttcatgtaagcattctcaatcagagaagttaacgagttttgatgatgatcgtggttatgatagctatagctattctgagagttgtgatgtagaggaatctgtggaatctgaaattgatgatcctgagcacgaagaggaagaacatgaggaagttcggtctgtggctgcaaatgatgtgatgaagctgaggaaggaaattgagatacttggtgaaaagaagaagggtcataaggatcaaatcaagcaaattcaaaaagatgacatgcttgatgtaatgaagttgagggaagaaatagagcgatccgagaaagagaatgaagcacataaggatgaactcaagcaggaaatttccatttctaatgaagtagtaatgaagttgagggaagaaatagaacaattccagcagaaagataccattcacgatcatcaagtaatgaagttgagggaagagatacaacgactcaataaagagaatgaagcactgaaggatgaactcaagcagaaagacaccgtttctaatgaagtaatgaagttgagggaaaagatagagcgactcgagaaagagaatgaagcgcagaagaatgaattcaagcagaaagacaccgtttctaatgaagtaatgaagttcagggaaaagatagagcgactcgagaaagaaaatgaagcaaagaaggatgaactcaagcagaaagacaccatttctaatgaagtaatgaagttcagtgaaaagatagaacaactcgagaaagagaatgaagcacagaaggatgaactgaagcagaaaaacaccatttctgatgaagtaatgaagttgaaggaacaaatagaacaactcaagaaagagaatgaggcacaaaaggatgaactcaagcagaaagctacaatttgcaatgaagtaatgaagttgagggaagaattagaagaaacacacaagaaagagaatgaagctcagaaagatgaactcaaggaggaagataccaccatttgtgatgaagtaatgaagttgaggaaagagatagaacgactcgagaaagagaatgaagcacagaatgatgaactcaaggagaaacatatcatttgcaatgaagtgctgaagttgagagaagaattagaaagacacagggaagagaatgaagctcgaaaagatgaactcatgcataaacttaccatttatgatgaagtaatgatgttgaaggaagagagggagagttttagagaagagaataggacacagaaggatgatctgaaacagaaagacaaagagaaaatagaggtaataagacagctcagttcaacaatagatttgctgaagcaggagaatgtaaagatgagaaacttcatagctaaggaatctgccaaaaaatggaagacaccatttaagttcaacaaactcattggaacattctcagagaaattgcttaatgggattccaaagactaagcctagtctggtagctctctagatatggttcaaaaatttaaaataccatgctgttctataaaacaatattataaagatatattgatacatatgttagggccttatcagaatttccttagaatcaattcaatatgtttcttagtgtttaaatgctagtgtactttcttatagaactatatgaataattttttaccaatattccaattgttacaattttttattcatttatctatactgtattcaacccaatgtgcccatctcactttttcatgccttaaaagtttaatttccactactctatcttaatgcaaagtgcaccaaaagaagagtcattaaaagcttcttttttgccacataagagagcattcattgttcaattgattgctaaagccaatgatctttataaataaataggaagttgtccctgcattcctaaaatctatggtatattcctcactttaaggctattatataaatagatatcaaaagaatatagtaataaaaacaaagtaacatacactaaaaaacaaagagtaaagctttagacacctcatgttttctatgtcacttatctggaattcgaatagtactggtcattcttaacttacctctaatggaactctggattattagggtcatctttccgtaaaaatcatagggttaagac
//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]