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2024-03-29 17:50:35, GGRNA.v2 : RefSeq release 222 (Jan, 2024)

LOCUS       XM_040380212            9053 bp    mRNA    linear   INV 26-JUL-2022
DEFINITION  PREDICTED: Anopheles coluzzii protein argonaute-2 (LOC120957828),
            transcript variant X5, mRNA.
ACCESSION   XM_040380212
VERSION     XM_040380212.2
DBLINK      BioProject: PRJNA858859
KEYWORDS    RefSeq.
SOURCE      Anopheles coluzzii
  ORGANISM  Anopheles coluzzii
            Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
            Pterygota; Neoptera; Endopterygota; Diptera; Nematocera;
            Culicoidea; Culicidae; Anophelinae; Anopheles.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_064671) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Jul 26, 2022 this sequence version replaced XM_040380212.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: Anopheles coluzzii Annotation
                                           Release 101
            Annotation Version          :: 101
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.0
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9053
                     /organism="Anopheles coluzzii"
                     /mol_type="mRNA"
                     /db_xref="taxon:1518534"
                     /chromosome="3"
     gene            1..9053
                     /gene="LOC120957828"
                     /note="protein argonaute-2; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 71
                     Proteins"
                     /db_xref="GeneID:120957828"
     CDS             818..3511
                     /gene="LOC120957828"
                     /codon_start=1
                     /product="protein argonaute-2 isoform X4"
                     /protein_id="XP_040236146.1"
                     /db_xref="GeneID:120957828"
                     /translation="
MYPVGQPPPAGATVNPTTVATTTGTQGAQALGVVPATPPAPPDLPVFTCPRRPNLGREGRPIVLRANHFQITMPRGFVHHYDINIQPDKCPRKVNREIIETMVHAYSKMFGALKPVFDGRNNLYTRDLLPIGNDRVELEVTLPGEGKDRVFRVTIKWVAQVSLFNLEEALEGRTRQIPYDAILALDVVMRHLPSMTYTPVGRSFFSSPDGYYHPLGGGREVWFGFHQSVRPSQWKMMLNIDVSATAFYKAQPVIEFMCEVLDIRDINEQRKPLTDSQRVKFTKEIKGLKIEITHCGTMRRKYRVCNVTRRPAQMQSFPLQLENGQTVECTVAKYFLDKYKMKLRYPHLPCLQVGQEHKHTYLPLEVCNIVAGQRCIKKLTDMQTSTMIKATARSAPDREREINNLVRRADFNNDAYVQEFGLTISNNMMEVRGRVLPPPKLQYGGRVSSMSGQLLSGPQNKVSLALPNQGVWDMRGKQFFTGVEIRVWAIACFAPQRTVREDALRNFTQQLQKISNDAGMPIIGQPCFCKYATGPDQVEPMFRYLKSTFSHLQLVVVVLPGKTPVYAEVKRVGDTVLGMATQCVQAKNVNKTSPQTLSNLCLKINVKLGGINSILVPSIRPKVFDEPVIFLGADVTHPPAGDNKKPSIAAVVGSMDAHPSRYAATVRVQQHRQEIIQELSSMVRELLIMFYKSTGGFKPHRIILYRDGVSEGQFPHVLQHELTAIREACIKLEADYKPGITFIVVQKRHHTRLFCADKKEQSGKSGNIPAGTTVDVGITHPTEFDFYLCSHQGIQGTSRPSHYHVLWDDNHFESDELQCLTYQLCHTYVRCTRSVSIPAPAYYAHLVAFRARYHLVEKEHDSGEGSHQSGCSEDRTPGAMARAITVHADTKKVMYFA"
     misc_feature    995..1384
                     /gene="LOC120957828"
                     /note="N-terminal domain of argonaute; Region: ArgoN;
                     pfam16486"
                     /db_xref="CDD:435368"
     misc_feature    1412..1564
                     /gene="LOC120957828"
                     /note="Argonaute linker 1 domain; Region: ArgoL1;
                     pfam08699"
                     /db_xref="CDD:430160"
     misc_feature    1565..1927
                     /gene="LOC120957828"
                     /note="PAZ domain, argonaute_like subfamily. Argonaute is
                     part of the RNA-induced silencing complex (RISC), and is
                     an endonuclease that plays a key role in the RNA
                     interference pathway. The PAZ domain has been named after
                     the proteins Piwi,Argonaut, and Zwille; Region:
                     PAZ_argonaute_like; cd02846"
                     /db_xref="CDD:239212"
     misc_feature    order(1721..1723,1766..1768,1808..1810,1820..1822,
                     1874..1876,1895..1897,1901..1903)
                     /gene="LOC120957828"
                     /note="nucleic acid-binding interface [nucleotide
                     binding]; other site"
                     /db_xref="CDD:239212"
     misc_feature    2063..3382
                     /gene="LOC120957828"
                     /note="PIWI domain, Argonaute-like subfamily. Argonaute is
                     the central component of the RNA-induced silencing complex
                     (RISC) and related complexes. The PIWI domain is the
                     C-terminal portion of Argonaute and consists of two
                     subdomains, one of which provides the...; Region:
                     Piwi_ago-like; cd04657"
                     /db_xref="CDD:240015"
     misc_feature    order(2513..2515,2525..2527,2561..2572,2579..2581,
                     2603..2605,2612..2614,2624..2626,2636..2638)
                     /gene="LOC120957828"
                     /note="5' RNA guide strand anchoring site [active]"
                     /db_xref="CDD:240015"
     misc_feature    order(2717..2719,2723..2725,2936..2938,3350..3352)
                     /gene="LOC120957828"
                     /note="active site"
                     /db_xref="CDD:240015"
     polyA_site      9053
                     /gene="LOC120957828"
                     /experiment="COORDINATES: polyA evidence [ECO:0006239]"
ORIGIN      
ttcttgtaaattcatctaaaatcctcttatattcaaaccaagcaaatacaaaaaaacaatacaattttatttaaaaaaccaaaattataactgaaacgtcaccccacaaccgcctgtgttcgaaaagcctttcgcccatcttttggaggccttttcatcgccacgcgcgcgtttaccgcccgagcgggttgaaaacttacgctctgtgtacgagcgtgcgtgcgcgcgcgcctgtatgtgtgtgtgttttgtgtgcggaacgagcaaaagttgtggcggatgcatcactctttttcttcttcaaatttccgagcgaaacgcgcgctgttggcgaacgggcggcagtgaaactgtgtgaaaagcttaaaccactcctgcatccggtgtttgtggcgcgggttcggtgcggttcgcgtcggtggtcgtacgggaaagtgggccctacaaagcgcgtgtctcgggtaccccgtcagcgagagggggtgtggtgggagagagaacacagagccacagtgtgtggaccatctcgggtcgggtggagcagaagggaaacattaagggcgacacacagtgtgtcagggtgtgtgtgtgtgtgtgcctgtgtgcgtggagcaagatcaaacgggaaaaaagaggaaagacaccccagtgtgtggtgtgccgtggccgcaatcgagtgtgtgaaacaaggttgtcccgcaaaagacggccggacccaccggagcagcagcagcagcagcaggcgtaggagcagaagcagaagcagcagtagcaccagcagcgtagcaacgagcagccagcacatacattcacaacaatgtatccagtaggccaaccacctccggctggggcgacggtcaacccgaccacggtggcgacgacgacgggtacgcagggtgcgcaggcactcggtgtcgtgccggccacaccgccggcaccgccggatctaccggtcttcacatgcccgcgccggcccaacctgggccgggagggccgcccgatcgtgctgcgggccaaccacttccagatcacgatgccgcgcgggttcgtgcaccactacgacattaacatccagccggacaagtgcccgcgcaaggtgaatcgcgaaatcatcgaaacgatggtgcacgcgtacagcaagatgttcggcgcgctgaagcccgtgttcgacgggcgcaacaatctgtacacgcgcgatctgctcccgatcgggaacgatcgcgtcgagctggaggtaacgctgccgggcgagggcaaggatcgggtgttccgcgtcacgatcaagtgggtcgcgcaggtgtccctgttcaacctggaggaggcgctcgagggccgcacccgccagataccgtacgatgcgatactggcgctggatgtggtgatgcgccatctgcccagcatgacctacacaccggtcggacgcagcttcttcagctcgccggatgggtattatcatcctctgggcggtggtcgtgaggtgtggttcggtttccaccagagtgtcagaccctcacagtggaagatgatgcttaatattgacgtatcggctaccgcgttctacaaggcgcagccggtgattgagttcatgtgcgaggtgctggacatcagagacatcaacgagcagcgcaaaccgctgaccgattcgcagcgcgtcaagttcaccaaggaaatcaaggggctcaagatcgaaatcacccactgcggtacgatgcggcgcaagtatcgcgtctgcaatgtgacgcgacgacccgcacaaatgcaatccttcccgttgcagctagagaacggccaaacggtcgagtgtacggtggccaaatacttcctcgacaagtacaagatgaagctgcgctatccgcacctgccctgcctgcaggtgggccaggagcacaaacacacctacctgccgctggaggtgtgcaacatcgtggccggccagcgctgcatcaagaagctgaccgacatgcaaacatcgaccatgatcaaagcgactgcccgttcggcacccgatcgggagcgagaaatcaacaatctggtgcggcgagccgatttcaacaacgacgcgtacgtgcaggagttcggtctgaccatctcgaacaacatgatggaggtgcggggccgtgtgctgcccccgccgaagctacagtacggtgggcgcgtttccagcatgagcggacaattactctccggtccacagaacaaggtgagcttagcattaccaaaccaaggggtttgggatatgcgaggcaaacaattttttaccggcgtcgagatacgcgtgtgggcgatcgcctgcttcgcgccccagcgcaccgtgcgggaggacgcgctgcgcaactttacccagcagctgcagaagatttcgaacgacgcgggcatgccgatcatcgggcagccgtgcttctgcaagtacgcgaccgggccggaccaggtggagccgatgtttagatatctgaagagcacgttcagccacctgcagctcgtcgtggtggtgctgcccggcaaaacgcccgtctacgcggaagtaaagcgcgtcggcgacacggtgctcggcatggcgacgcagtgtgtgcaggcgaagaacgtgaacaaaacgtcgccccaaacgctgtccaatctctgcctgaagatcaacgtgaagcttggtggaatcaactcgattctggtgccatcgatcagaccaaaggtattcgacgagccggtcatcttcctcggcgctgacgtgacgcacccgccggccggcgacaacaagaaaccgtcgattgcggccgtcgtcggctcgatggatgcgcatccgtcccggtacgcggcgacggtgcgcgtccagcagcaccggcaggagatcatccaggagctgagcagcatggtgcgcgagctgctgatcatgttctacaaatcgaccggcgggttcaagccgcaccgcatcatcctctaccgggacggtgtgtccgagggccagttcccgcacgtgctgcagcacgagctgacggcgatccgcgaggcgtgcatcaagctggaggccgactacaagccgggcatcacgttcatcgtggtgcagaagcggcaccacacgcggctgttctgcgcggacaagaaggagcagagcggcaaatcgggcaacattccagccggcacgaccgtggacgtgggcattacgcatccgaccgagtttgacttctacctgtgcagccaccagggcattcagggtacgagtcgcccgtcccactaccacgtgctctgggacgacaatcacttcgagtcggacgagctgcagtgcctaacgtatcagctgtgccacacgtacgtccggtgtacccgatccgtttccattccagctcctgcctactacgcacatttggtcgcatttagggcgaggtaccacttggtcgagaaggagcacgattcgggcgaaggatcgcaccagagcggttgctcagaggacagaacgccgggcgcgatggcccgcgccattaccgtacacgccgacaccaaaaaggttatgtactttgcctaaatgctgggcaaaggcttcatcggacgacacacgcacacatacacacgcagtttcagtttggccgtcgtcgccgtccgagctgctgctgcagtgtgcagaggagaagaagaggaagaaggatatgcatcccgaagtcactaaaacaacaaaaaagcagtaccgaatccaacgcgcgccagcttgctctgttggtggtgatgatccagcagcagcatcatcaacaatcaacatcggcagcaacagtagcagccgaagcggttttaatcgtaaatcaaattcaatcaatcactatgctatcgagatctctcacgcgtttgtcaggtgtaacgcaaaacccactgatgctttaattttgtaccccggatgatgatcccgaatgatgttggcaagcttttacgcgcaaaacccccccgaacacgtgtgcgggcgcgtagtttgcagtgctctgctgtaccaatattgagcggaagcaatcgcacgagatactgtaatgtgtaggggggagtgtagggtaacggattgtgcaattgtgcagttatcacctcattgcatcaccactacccagcgagataagtatgttctagcaaagcgcaagagaggtgtagtagagtagagagaacagtctcgtcttttgcaacagatcgttgcatgttatcgtgtgttttaaatgtttaacgtgtccttatattatttcataacgtatatgcaaacctttagtttgtaaaacgattcgcttccttacgagctcttaccagtagcagatgctgatgatggtgttgttggtggttgcgtgtgtttatgtacgtaggaaacaaaccccagattaatttgggtttgcagtgagctttacgtttttacgtttccttttctttgacatcgtgcaacaaccaatacaaacaacacactatcaatagactcttgttgatacacaaaaacacacactttacgctacaatcagtgccccaatcacgttcaacaccgcaaaatcgcgcggtgggggaaggcgaccaccatcatcagtgagacaaatggtgtgaaacgttgtatttagtcggtaatagtttagtacaattgtgaaaatacaagggattttttttacgtcttaacatcgactgtcacacgctaccaattatgaatttgctcgttgtgcggcttcggcggctctgaacccccgaagtgttcgggcggaggtatcaaaacgagttatgttttgagttcgtcaaataagctgctttttttactattggttaaatttactggaagcaaatatccaatatattatgacagcattagtgtagaatgagtacagaaaacgagatgaaagagatgtaggtgaataaggtttctttcttttttcgttagcgggatatgtgaaagagaagcaagctttccgtgtataattcattaaatgataatttcccactgctcaaatgcaaaccaatttgcaactacaatgccatccgttcggcaataacatgctgctggtggtttaagcttcctctacgagatctcccgccccttcggcgtttggaacagaacagtctctaccaccgcctccatgagcccagcccaaggggttgatgaatcatttcgcctctagagttattagtagatacacgcgcttttatacactagcacaagctctcagtactactactactacttaccagtaagcttcccccactctcagcacacacacacgccagcactgtaaaaatagtcaaaaaggtttgctcgtttcgtgtgcttactaagcgccattttgaatagatttgatctaaagcataacgagcaaaagctctcgatgtgttgtgtggtgtgcgaaacacgcacctcaacacgagtgccgggaattagacagacagtttaataacactcaatacactcaaacacaatcaattcttcaacttgttgtatatacgtgtaaggaaaacaaaatctcgtctgccgcgggaaagagcatcgaatatgcaggggggaagggggacccccccccccccctttgaatgcgccaacgaaacatcatcatccaaacttaagcgaaacaaactaaagctgttcggtacggtcactaatgaatgcggtcaaatcatagattcttaagacgtaagacgataagagggaactcagcatgaaaaaaaaaaacatgaataatgcttcatcaaaccccccgcagtggtttcgtgggggaggggtagcactaccggaaaggtgtaaaatatttaacacaatgtaaacacaattctttttacaaactctgatcacacaacacaacactaagctatagagagccccccacacaaaacgtggttatgtagatgaatttgtagtcaaatccaatcaaacccctctcaatgtatggaggcttttatcaatgcaaaatgtgtcaaaactgtatgtgtgtcacgggcgggagtaagaaaagaacggacaaaggaacggcgacagctacacaatttagggtttgttagggacagcagcgagccaggtttaagatgtgttctgttccgtatacatgtatgtgatggtgtgtgtgtgacagtgcgcagctgtagtttgcaaattcggctgctacacttaatcgtatgatacttataagaggtgcaaagcgattgcagcacgcgaacgatacacaaaccccctcactccgcccctttcccaaaaaacaacagaatcttaccattgagcgaatgaacaacccacccagagcggatagaatgctcacactaaaaaacaaccacgcaacaataatcagatcagatcccatttcccaggcacccacaggtgcccttttacagggttttcgaggattatatagacatgttcagcgagttgtagattcggtcaggcatataatagactctttcagcgagatatagaattgttcggaagtaggcgttgacatgttcagcgattctgtagagctgtcatttgttttgtttacacgctgtgccgcagggttcaatttttcattcttaaaagtcctaaaagtagctaataatcattctccaagctgtttaatacataaattagttgaaaaaagcatattttttcgaaaaccgtttgtttaccttctgatgagaatgatccaacttgcagtccaaggggtacgaaagtgacagctctacagtataaccgaacatgtctacacctacttccgaacaattctatatctcgctgaaagagtctattatatgcctgaacgaatctacaactcgctgaacatgtctatataatcctcgaaaaccctgtaaaagctacacccgccccccattacaccgtttttttagttttgcctgtgcagtagtagcatcagattgtattgtcgattcgcacgaaggtttcagtaaacgtatgatgatgaggatgaggaatcaacctggcaaaaaatgggaagtaagctttactcgctcgctcgaacctcctgcgcactagcgtgtttaaacatacatttgtagctcccttccttcatacacattagcagcaggcaacatcagtccgtgctagtgtgcggtctttatatattagctctatatgtacgtacatttatatatgttgcttgcttcactcggaaagcatctctaaagtggggtaggatttaatgttgacaaacaaggagaaggagtctagtagcgtggatggaaaacaaaactgataatgagcatgatggattttaaaattgtggtgtatgtttttcggggacgaactgtgtggactggggcttccttttttttatttaacacaccaacgcaaagccaccaaccaaaccagttcacgcacacacacacagcagttcgtgggtaaaattcagttattgattcatagcagcatcacccatttcgcgtataagcaagagaggaatgattctaatgtgaagtagagttggacatcgcgtgaatatcgcaataataagcaagatcatcagatgaattgcgtgcgggcaaaatgactagacggaagtatttaggtcagcagcatctcgataaaagcagcagcagcagcacgcattcgtcgaaacatagagttataacaaacaaacaaaaaaaacacacaagcgagacacatacatacatatatatatatatattagtacggtggtccatgtgccaccagtaagctgaaacttcagaccgggaattagattgtaaggatcgtaacaaataatatgaaaaaaggtatattatacatacattaattgtaaatgattaaatcttaaatggcggtcaccaaattgctaatttttctcaaaacgcgatcgctcgcggcggtggtgttttggacgcacacttcacgagagagacgagaggacattacatggcttgaaacattacccccaataatcatatcgttcgcgtattgcagggagagagagagaggggtgatatcgaacggttagaatgactccatcaatagattagaaatgtgttttccgttttgtttgtttctaatttataaagcaaacagacgtaaacacaaactctaccgcaactgagaaaggtttctccgacaaaaaaacaaacccaataaaacactgacaaatacaccacaacggaagcggtaaggagattttgattttgccaagccttttgcaagggcttacacagggacgagttgctaaatatgtttttagctgtaattacgaactgcgcttgagcacaaaaggtgcggccagcagtgatgatggaaggctcgagaagattaaaatctccccttcaatttgaatcataaactttaaccgaccgatggtcaattctaatctctctgtctaatgatccaaatcacaaaacataagcgaaaacaaaaagaataaagagtgagagtgaatgaccaaaaagaagaaaagcacacaaacacacccccacacacagaacaaaagagtggaaacaaatttttagcaaatttgaatgtgaaaagcagcgttttgtttaacaattaattgggctaaaatgaatgaaaaagagtacgtaacggtgagtgatgatagcacataacacgcaacgcaaccaacacacaacacagtgaccaaacacacaaaaaaaaaaacgtacgcgacatgttttcttttaaaagaaaaacaaacaaacaaaaacaaagaaagtggaaaaagaaccgcaagacaagtgaaaagaaacaaataactatattcaacttatacaagggatttataacatattaaggtagtcaaaaagaagaagaaaaacggagaggaaagaggaagtgaagaagaagcaaacacctttgcaaaaatcgaacattaaagtatgaaaacaatgacccattaacaggcaaaattgtattttagataacaaaagcaactaaaataatgaaaaaaacagagagacatgtgtttaagtggcaagattaagctaaacaagaagtaaaaaaaaaacaaaaactagcaagtaagacgaaacaaagcaaagcataaactttaaagtgtaaagggaaagaagaaggaaggaacacaaaacatacattaaacatgtgagaaagtaagagaaaacaaattgtcaaagcacacattcaaaaaaaaaaaaagaaa
//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]