LOCUS       XM_035966452            1844 bp    mRNA    linear   PLN 20-FEB-2025
DEFINITION  PREDICTED: Zea mays protein argonaute 1B (LOC103651475), transcript
            variant X2, mRNA.
ACCESSION   XM_035966452
VERSION     XM_035966452.1
DBLINK      BioProject: PRJNA655717
KEYWORDS    RefSeq.
SOURCE      Zea mays
  ORGANISM  Zea mays
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD
            clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae;
            Zea.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_050098.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_902167145.1-RS_2025_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.3
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/14/2025
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1844
                     /organism="Zea mays"
                     /mol_type="mRNA"
                     /cultivar="B73"
                     /db_xref="taxon:4577"
                     /chromosome="3"
     gene            1..1844
                     /gene="LOC103651475"
                     /note="protein argonaute 1B; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 15
                     long SRA reads, and 91% coverage of the annotated genomic
                     feature by RNAseq alignments, including 59 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:103651475"
     CDS             1049..1639
                     /gene="LOC103651475"
                     /codon_start=1
                     /product="protein argonaute 1B isoform X2"
                     /protein_id="XP_035822345.1"
                     /db_xref="GeneID:103651475"
                     /translation="

MGLSLNIDMSSTAFIEPLPVIDFVAQLLNRDISVRPLSDSDRVKIKKALRGVKVEVTGNMRRKYHISGLTSQATRELSFPVDDRGTVKTVVQYFMETYGFSIQHTTLPCLQVGNQQRPNYLPMEVCKIVEGQHYSKRLNEKQITALLKVTCQRPQERELDILQDSGSHQVTPPPHDDFADKCLHSSGGAMNNNPMS"

     misc_feature    1097..1435
                     /gene="LOC103651475"
                     /note="PAZ domain, argonaute_like subfamily. Argonaute is
                     part of the RNA-induced silencing complex (RISC), and is
                     an endonuclease that plays a key role in the RNA
                     interference pathway. The PAZ domain has been named after
                     the proteins Piwi,Argonaut, and Zwille; Region:
                     PAZ_argonaute_like; cd02846"
                     /db_xref="CDD:239212"
     misc_feature    order(1238..1240,1283..1285,1316..1318,1328..1330,
                     1382..1384,1403..1405,1409..1411)
                     /gene="LOC103651475"
                     /note="nucleic acid-binding interface [nucleotide
                     binding]; other site"
                     /db_xref="CDD:239212"
ORIGIN      

gacagtgacgacgatgttgatgaggatagaaaggaacaaatttctcattgattttttgagttgggaagtggcaaccacacttcaagtggtggtgctcgtacatctctttgttggactgcatgaatgtgcagggaacacaaaaaaacagatgtacaatcaatcctggtgacagtgctctctgtttggatgaaaggaacaaccatatgaccgtgtcctagcaaaagctgaataacaagtgaaaaaagctggaacctcaagcaaagtttgcatcagtagagaatttataaattcttcctttgtgtgaaatcaccatactgtaagaatgttcacttacgtttccgaataagaacttcaagggaagtgaatagttctatatgagcaatctttgcttagtctaatctcaatattggaaacaaatttaggtagctgagctgatatatgggcaagatactaaactcatgatcacttgctttattgcttccctcaattcatgagcatggatctatatgctggtccaacaactataaagcctgtcatgaataacataccttagcaataggttcagcctacaaattaacaatgttggttctatatgtatgtttggaattctatttagggctttatgttcctaaatgatttgtatcactgtggttcagtactatcaatatgcattgtgaattgtgatgttttgctgctattttgctatacaggtgaaggagcaaataagttagctgcaccatgttgtcaacttgtattttagaaattttctctttattattttagcaattccatgacgcagctgatattctatttgtcttacatcatttaccttttctacactccctaagctgatattctagctggaaggcaagcagatgcccctcaggaagctcttcaagtgcttgacattgtactacgtgaattgcctaccgcgaggtattctcctgttggtaggtcattttactctcccaacttagggagacgtcaaaaacttggtgagggattagaaagttggcgtggtttttaccaaagcataaggccgacacagatgggcctttcactgaatattgatatgtcctctactgcatttatcgagcctctccctgtgattgattttgttgctcagcttcttaacagagatatctcagttagaccattatctgattctgatcgcgtgaagattaaaaaagccctaagaggtgtgaaggttgaggtgactggaaacatgcgcagaaaatatcacatttctggcctcacctcacaagcaacaagagagctatcattccctgttgatgatcgtggtactgtgaagactgtggtgcaatacttcatggagacttatggttttagtatccagcacaccactttaccatgcttgcaagtgggcaatcaacaaagaccaaattatctgcctatggaggtttgcaagatagttgaaggacagcattactcaaagagactcaatgagaaacaaatcactgctctactgaaagtgacctgccagcgccctcaagagcgtgagctggacatcttacaggattccggctctcatcaagtgactcctccccctcacgatgactttgcggacaaatgtctccattctagtggtggagctatgaacaacaatccgatgtcctgatcgagagcgatggagctaatgtttgaacttgtgaactaaaaatgtgaactatggatgtgaacttatgtaaatttgtgaacttatgcatttggacttatgtgaatttgtgaacttatgtatttggacttgtgtgaatttgtgatatgaacatatatccatgtgtttgaaatctgtattgtatgtgatattctgtgttgcatgtgat

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