2024-04-25 18:35:35, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_035698764 6269 bp mRNA linear MAM 15-JUL-2022 DEFINITION PREDICTED: Canis lupus dingo protein argonaute-4 (LOC112663833), transcript variant X2, mRNA. ACCESSION XM_035698764 VERSION XM_035698764.2 DBLINK BioProject: PRJNA477859 KEYWORDS RefSeq. SOURCE Canis lupus dingo (dingo) ORGANISM Canis lupus dingo Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_064257) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Jul 15, 2022 this sequence version replaced XM_035698764.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: Canis lupus dingo Annotation Release 102 Annotation Version :: 102 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..6269 /organism="Canis lupus dingo" /mol_type="mRNA" /isolate="Sandy" /sub_species="dingo" /db_xref="taxon:286419" /chromosome="15" /sex="female" /tissue_type="muscle" gene 1..6269 /gene="LOC112663833" /note="protein argonaute-4; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 94 long SRA reads, 6 Proteins" /db_xref="GeneID:112663833" CDS 144..2528 /gene="LOC112663833" /codon_start=1 /product="protein argonaute-4 isoform X2" /protein_id="XP_035554657.1" /db_xref="GeneID:112663833" /translation="
MVRHFKMQIFGDRQPGYDGKRNMYTAHPLPIGRDRVDMEVTLPGEGKDQTFKVSVQWVSVVSLQLLLEALAGHLNEVPDDSVQALDVITRHLPSMRYTPVGRSFFSPPEGYYHPLGGGREVWFGFHQSVRPAMWNMMLNIDVSATAFYRAQPIIEFMCEVLDIQNINEQTKPLTDSQRVKFTKEIRGLKVEVTHCGQMKRKYRVCNVTRRPASHQTFPLQLENGQAMECTVAQYFKQKYSLQLKYPHLPCLQVGQEQKHTYLPLEVCNIVAGQRCIKKLTDNQTSTMIKATARSAPDRQEEISRLVKSNSMVGGPDPYLKEFGIVVHNEMTELTGRVLPAPMLQYGGRNKTVATPNQGVWDMRGKQFYAGIEIKVWAVACFAPQKQCREDLLKSFTDQLRKISKDAGMPIQGQPCFCKYAQGADSVEPMFKHLKMTYVGLQLIVVILPGKTPVYAEVKRVGDTLLGMATQCVQVKNVVKTSPQTLSNLCLKINAKLGGINNVLVPHQRPSVFQQPVIFLGADVTHPPAGDGKKPSIAAVVGSMDGHPSRYCATVRVQTSRQEISQELLYSQEVIQDLTNMVRELLIQFYKSTRFKPTRIIYYRGGVSEGQMKQVAWPELIAIRKACISLEEDYRPGITYIVVQKRHHTRLFCADKTERVGKSGNVPAGTTVDSTITHPSEFDFYLCSHAGIQGTSRPSHYQVLWDDNCFTADELQLLTYQLCHTYVRCTRSVSIPAPAYYARLVAFRARYHLVDKDHDSAEGSHVSGQSNGRDPQALAKAVQIHHDTQHTMYFA"
misc_feature 153..407 /gene="LOC112663833" /note="N-terminal domain of argonaute; Region: ArgoN; pfam16486" /db_xref="CDD:435368" misc_feature 438..590 /gene="LOC112663833" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:430160" misc_feature 591..953 /gene="LOC112663833" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212" misc_feature order(747..749,792..794,834..836,846..848,900..902, 921..923,927..929) /gene="LOC112663833" /note="nucleic acid-binding interface [nucleotide binding]; other site" /db_xref="CDD:239212" misc_feature 1092..2399 /gene="LOC112663833" /note="PIWI domain, Argonaute-like subfamily. Argonaute is the central component of the RNA-induced silencing complex (RISC) and related complexes. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the...; Region: Piwi_ago-like; cd04657" /db_xref="CDD:240015" misc_feature order(1503..1505,1515..1517,1551..1562,1569..1571, 1593..1595,1602..1604,1614..1616,1626..1628) /gene="LOC112663833" /note="5' RNA guide strand anchoring site [active]" /db_xref="CDD:240015" misc_feature order(1707..1709,1713..1715,1953..1955,2367..2369) /gene="LOC112663833" /note="active site" /db_xref="CDD:240015" polyA_site 6269 /gene="LOC112663833" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN
cctggccttggaactgttggaaaaccaattcgactgttagccaaccattttcaggttcagattcctaaaatagatgtatatcactatgatgtggatattaaaccagaaaaaaggcctcggagagtcaacaggtagtagatacaatggtgcggcacttcaagatgcagatatttggtgatcggcagcctggctatgatggcaaaagaaacatgtacacagcacacccactgccaattggacgggacagggttgatatggaagtgacccttccaggtgagggtaaagaccaaacctttaaagtgtctgttcagtgggtatcagttgtaagccttcagttgcttttagaagctttggctgggcacttgaatgaagtcccagatgactcagtacaagcacttgatgttatcacaagacaccttccctccatgaggtacactccggtgggtcgttcttttttctcacctcccgaaggttattaccaccctctgggagggggcagagaggtctggtttggctttcatcagtctgtgagacctgctatgtggaatatgatgctcaatattgacgtgtctgcaactgctttctaccgggctcagcctatcattgagttcatgtgtgaggttttagacattcagaacatcaatgaacagaccaaaccgctaacagattcccagcgtgtcaagtttaccaaagaaatcagaggtcttaaagttgaggtgacccactgtggacaaatgaaacgaaaatatcgagtttgtaatgtgactagacggccagccagtcatcaaacttttcccttacagttggaaaatggtcaagctatggaatgtacagtagctcaatattttaagcagaagtatagtctgcagctgaaatacccgcatcttccctgtctccaagtgggacaagaacaaaaacatacatatttgccacttgaggtctgtaatatcgtggcaggacagcgatgcatcaagaaactcacagacaatcagacttccacgatgatcaaagctacagccagatctgctcctgacagacaggaagaaatcagcagactggtgaagagtaacagcatggtgggtggaccggatccataccttaaagaatttggtattgttgtccacaatgaaatgacagagctgacaggcagggtactcccagcaccaatgctgcagtacggaggccggaataaaacggtagccacacccaaccagggtgtctgggacatgcgaggaaagcagttttatgctggcattgaaattaaagtttgggcagttgcttgttttgcgcctcagaaacaatgtagggaagatttactaaagagtttcactgaccagctccgtaaaatctctaaggatgcagggatgcccatccagggtcagccgtgtttctgcaagtatgcacaaggtgcagacagcgtggagcccatgttcaaacatctgaaaatgacctatgtgggcctacagctaatcgtggttatcttgcctgggaagacaccggtgtatgcggaggtgaaacgtgttggagataccctcctgggtatggccacacaatgtgtccaagtaaaaaatgtggtgaagacctcgccccaaactctttccaacctttgcctgaagataaatgcaaagctcggaggaattaacaacgtgcttgtacctcatcaaaggccctcggtgttccagcagcctgtcatcttcctgggagcggatgtcacacaccccccagccggggacggaaagaagccttccattgctgctgtcgttggcagtatggatggccaccccagccggtactgtgccaccgtccgggtgcagacctcccgccaggagatctcccaggagctcctctatagccaggaggtaattcaggaccttactaacatggttcgagagctgctgatccagttctacaaatccacacgcttcaaacccactcggatcatctactaccgaggaggggtatcggagggacaaatgaagcaggtagcctggccagagctcatagccatccggaaggcatgtattagcttggaggaagactaccggccaggaataacctacatcgtggtgcagaagagacaccacacacgactcttctgtgcagataaaacagaaagggtggggaaaagtggcaacgtaccagcaggcactacagtggacagtaccatcacacatccttcagagtttgacttttacctctgtagtcatgcaggaattcagggaaccagccgtccttcacattaccaggtcttgtgggatgacaactgcttcaccgcagatgaactccagctactaacttaccagctatgtcacacgtatgtgaggtgcacacgctcggtctccattccagcccctgcatattatgcccggcttgtagcattcagggcaaggtatcatctggtggataaagatcatgacagcgcggaaggcagtcatgtgtcaggacagagcaacggccgggatcctcaggccttggccaaggctgtgcagatccaccatgatacccagcacacgatgtattttgcctgagagtctcagaaaaagaactcaaccaatctggcaccccacgcagcctcgaaatgtttcaaatgcctaccgcctctgagagagccaagttgacttcaggtggtcctctaccagcagcttggaatagttgcactgaatctatactttgcagcactgtctgatgcatcaacaaaattgagccattttttaaaaagtaatagatactcctagattgtcttttctgatgcactggactgaatttttacctcatcttgcaaaggctgatcggcctgaacttccttaaggactttatgagaaaggtttctatggaatattttgctagctgtggtgttcaccgcatccctctagtcttagaagattattccttgttttctgtatccattgagtggggtgtatgcataagtgggaaagaaaaaccaatctacttcagttcagcgtaactttctaattctgtgggtccatagactttttaatggagatttctgacttcaccactgtaaatgcctttaatgagcattaatttttgaaagttttacagttttattagttttcctacttcatcttcatgatatctacagacttgtgctggtgcaagaacaggctgccaggcaattgcactatatttggctgcaaatccagacaggcagttctcttatttggttgacttttgtgaatgtgtagcacaaagagatgtaatgcatgtcacggtgacaaaataacactgccatggtaagagtattcatgtttcccacctctctgaaaaaaaaaaaaaacttttagtatttttcaaagttttcaaaagtgcccattttatgctgctgtgtggtttgttagatctaaatgatttttaagcttttctcatagaaaattaactttggcaataaacattttttaaggtcccttctcttcctcccccaacaatgtagttttttagatgagatttcagtatgattttatcagctacttcttatagatcataatctggcaatttctgaaactggtcagaaaagacatatatttccatgactttttaaagaattatttttatctgttttatagtcacagttggtgtcctgtcactttgttttaaaataagctagaaccaggatgcttccttatcggataggctttgccaatcctcaaagtacattgagtgatgctgcaacctgcacaaatgtaccagcatttaaaactttttttcccgggaatcaaggttactcacacaattatgtgcagtgcaattttttttttttcttctctttcaacctgagatgtacttggtggggtttccttcctttccctaaactaaaattgcttagaagaggttgatttttctgaatagattctagattccgctcgcaaggagacgggttcctttcttgtccaaacaaagggagctgatctaaagcaagcatcagttgaaaatgtagggaaaaatgtattttgtatttagtgtagataccactttgtgaatggacagcagttacatagagtcttggtagttctagccagtgtttcccagccccaattgtactgacttgtgattctctaatcctggaacctcagaagtgagagctggagaaggggatcaaagccccagagccgccttccgtgtgactgaggaaggtgctgggggaagagacagacacaatgtgggaaaaccactttgcccccctgtctggagactgctggtggggaaacactggatctgatggtgaaaggtgtttgaactctgtagccggtccagatcgctcgaactagccttctcaaaatcccagcaatacaaagcactgtttttcttcggtcttttaaagaagcttgtaaatacgttgaagtttacatttccacgtgccgtaggtcagcggcggcccccacccccctcctccgtgtttgctgaaactttagaaggtcagcagagtcccgtagctcattccgaggactgcagcggcgcgtgcagcggggccccaagcaaggtctgtaaccgaggcacatccgaggcaggagtgaagggacggaaggtgttcattgcttaagattttccttttctgcaaatacctcacgtggatactacgaatcaggacctgttggtgaggggctggctgctgcttttgctcacacttgttcagggagagctcagaaaatacccttcagcttggcccccttgggcccaggaggaggaagcttctttcggagaagcaggacttgccggggttcaggatgtgcagagcccttggccagcgggcaccccacctgtactcgagggcctcaggcctgcttgttaacgcacagaagtgtcacttctcaccctgtcctgtcctgcgtgcagcagggagcgatgcggagggccacggagcccggattggcttgccgggccatggcctgaatgcttgaccttgaactctacagcttgtacaacctcagtcagtcctgtacactgggccgaatcagtgtggtggtggaggaaaagccgggaggcctatttttataggaaacagtacttttaagggggcagatgctctcattttggatgaaaggaaagaaatatggaagaactaggattattggggaaaaaaacaaaacaaaacctgctgagggggtgaatctttaagaggtaatcactatagagtcggagctgcagcaatactgttgcaagcaagtctaaatgcatagttgcaatttggcttgacagctgcaataccctaacccctcggggccgactgaattgtcatgcatgtgtcaatcaatgggaggtgtgcattctctagaagtaggtttaggctgtttgtctgttggtttcctttgggttttttttttttttttttttttttttttttaatgcagcctggttaggccctgtcatgtggtgtgaaagattgaaacgtagcaatgctaaagagtaaccgttaaggaataaggtgcggggacattaagagagtggtgacgatccaaacgagaaccgattacgtggtgtggtggtggttgttgaagctgctgaaccctcggggtttctaaagtgaactagctgacttaaagcactcagagcctgggcacgcagaacatgttcattcttactgtaaattctgtttgctgcttccaaaggtgatgatttacaagcagacacgttctgtatggcctgtactttaggatccggtgcccagcctgtgtcggagctcaccacctggttcccctacctacccttgctgtgggaaaaggcaacccactgcctaaggaggcccgctctctctgctctgccccagtgaccctttgtggatgtgctgtaagattttcttgctcaatagcaaggtgttgggagctctgctttcattttaagaaagtggaggctgagggcattgtatgaatactgcttcaactccgaggatttttccttataaaattaaagggaagatcttgttatcgcttaaccattttcttatcccttgctattgacattcatgctctatgtctagtggctgaaaatgtttgcatttgttcatttgactaatggtgtaattttggtttctatattgttagacctgtaatgttttaaaatgtattttattaactttggactggatgtatgtctctagcaatacgaggtactttctaaactattaagggaggggtgatatcctcatgttgagataaaatgatggttgtttaaattttgcaatttttttttggcctgcagggatattttgtgttcatgtgtccaaaagagaataaattggcattcttgtgccaaaa
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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