2024-03-28 17:41:00, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_035698761 7484 bp mRNA linear MAM 15-JUL-2022 DEFINITION PREDICTED: Canis lupus dingo argonaute RISC component 1 (AGO1), transcript variant X3, mRNA. ACCESSION XM_035698761 VERSION XM_035698761.2 DBLINK BioProject: PRJNA477859 KEYWORDS RefSeq. SOURCE Canis lupus dingo (dingo) ORGANISM Canis lupus dingo Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_064257) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Jul 15, 2022 this sequence version replaced XM_035698761.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: Canis lupus dingo Annotation Release 102 Annotation Version :: 102 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..7484 /organism="Canis lupus dingo" /mol_type="mRNA" /isolate="Sandy" /sub_species="dingo" /db_xref="taxon:286419" /chromosome="15" /sex="female" /tissue_type="muscle" gene 1..7484 /gene="AGO1" /note="argonaute RISC component 1; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 72 long SRA reads, 41 Proteins" /db_xref="GeneID:112642408" CDS 212..2785 /gene="AGO1" /codon_start=1 /product="protein argonaute-1 isoform X2" /protein_id="XP_035554654.1" /db_xref="GeneID:112642408" /translation="
MEAGPSGAAAGAYLPPLQQVFQAPRRPGIGTVGKPIKLLANYFEVDIPKIDVYHYEVDIKPDKCPRRVNREVVEYMVQHFKPQIFGDRKPVYDGKKNIYTVTALPIGNERVDFEVTIPGEGKDRIFKVSIKWLAIVSWRMLHEALVSGQIPVPLESVQALDVAMRHLASMRYTPVGRSFFSPPEGYYHPLGGGREVWFGFHQSVRPAMWKMMLNIDVSATAFYKAQPVIEFMCEVLDIRNIDEQPKPLTDSQRVRFTKEIKGLKVEVTHCGQMKRKYRVCNVTRRPASHQTFPLQLESGQTVECTVAQYFKQKYNLQLKYPHLPCLQVGQEQKHTYLPLEVCNIVAGQRCIKKLTDNQTSTMIKATARSAPDRQEEISRLMKNASYNLDPYIQEFGIKVKDDMTEVTGRVLPAPILQYGGRNRAIATPNQGVWDMRGKQFYNGIEIKVWAIACFAPQKQCREEVLKNFTDQLRKISKDAGMPIQGQPCFCKYAQGADSVEPMFRHLKNTYSGLQLIIVILPGKTPVYAEVKRVGDTLLGMATQCVQVKNVVKTSPQTLSNLCLKINVKLGGINNILVPHQRSAVFQQPVIFLGADVTHPPAGDGKKPSITAVVGSMDAHPSRYCATVRVQRPRQEIIEDLSYMVRELLIQFYKSTRFKPTRIIFYRDGVPEGQLPQILHYELLAIRDACIKLEKDYQPGITYIVVQKRHHTRLFCADKNERIGKSGNIPAGTTVDTNITHPFEFDFYLCSHAGIQGTSRPSHYYVLWDDNRFTADELQILTYQLCHTYVRCTRSVSIPAPAYYARLVAFRARYHLVDKEHDSGEGSHISGQSNGRDPQALAKAVQVHQDTLRTMYFA"
misc_feature 311..703 /gene="AGO1" /note="N-terminal domain of argonaute; Region: ArgoN; pfam16486" /db_xref="CDD:406799" misc_feature 731..883 /gene="AGO1" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:400854" misc_feature 884..1246 /gene="AGO1" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212" misc_feature order(1040..1042,1085..1087,1127..1129,1139..1141, 1193..1195,1214..1216,1220..1222) /gene="AGO1" /note="nucleic acid-binding interface [nucleotide binding]; other site" /db_xref="CDD:239212" misc_feature 1379..2656 /gene="AGO1" /note="PIWI domain, Argonaute-like subfamily. Argonaute is the central component of the RNA-induced silencing complex (RISC) and related complexes. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the...; Region: Piwi_ago-like; cd04657" /db_xref="CDD:240015" misc_feature order(1790..1792,1802..1804,1838..1849,1856..1858, 1880..1882,1889..1891,1901..1903,1913..1915) /gene="AGO1" /note="5' RNA guide strand anchoring site [active]" /db_xref="CDD:240015" misc_feature order(1994..1996,2000..2002,2210..2212,2624..2626) /gene="AGO1" /note="active site" /db_xref="CDD:240015" polyA_site 7484 /gene="AGO1" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN
cagctggccgggcgctcgcagggggagctgctgcaggctccgcggcggcggcggcaacggaggctgcgggggcagcggcgcgagcggccgggcttggggggggtgccgagcccggcccggaagcccgagcagccggagtgcggggtccctaggcccctcactctgggctccacagtctccaggccgcctgacctccgcacgggtatatgggatggaagcgggaccctcgggagcagctgcaggcgcctacctgccccccctgcagcaggtgttccaggcacctcgccggcctggcattggcactgtggggaaaccaatcaagctcctggccaattactttgaggtggacatccctaagattgatgtctaccactacgaggtggatatcaagccggataagtgtcctcgcagagtcaaccgggaagtggtggagtacatggtccagcatttcaagcctcagatctttggtgatcgcaagcctgtgtatgatggaaagaagaacatttacactgtcacagccctgcccattggcaatgaacgggttgactttgaggtgacaatccctggggaagggaaggatcgaatcttcaaggtctccatcaaatggctagctattgttagctggcgcatgctgcatgaggcccttgtcagtggccagatccctgttcccttggagtctgtgcaagccctggatgtcgccatgaggcatctggcatccatgaggtacacccccgtgggccgctccttcttctcaccgcctgagggctactaccacccgctggggggtgggcgcgaggtctggttcggctttcaccagtctgtgcgccctgccatgtggaagatgatgctcaacattgatgtctcagccactgccttctacaaggcgcagccggtgattgagttcatgtgtgaggtgctggacatcagaaacatagatgagcagcctaagcccctcacggactctcagcgtgtgcgtttcaccaaggagatcaaaggcctaaaggtggaagtgacccactgtggacagatgaagaggaaataccgagtgtgtaatgttacccgccgccctgccagccaccagacgtttcccttgcagctggagagtggacagactgtggagtgcacagtggcacagtatttcaagcagaaatacaaccttcagctcaagtatccccacctgccctgcctgcaagttggccaggaacaaaagcatacctacctgcccctagaggtctgtaacattgtggctgggcagcgctgcattaagaagttgaccgacaaccagacttcgaccatgataaaggctacagctaggtcggccccagacagacaggaggagattagccgcctgatgaagaatgccagctacaacctagatccctacatccaggaatttgggatcaaagtgaaggatgacatgacggaggtgacagggcgagtgctgccggcgcccatcttgcagtacggcggccggaatcgggccattgccacacctaatcaaggtgtctgggacatgcgagggaagcagttctacaatgggattgagatcaaagtctgggccatcgcctgctttgcaccccaaaaacagtgtcgagaagaggtgctcaagaacttcacagaccagctgcggaagatttccaaggatgcagggatgcccatccagggccagccttgcttctgcaaatacgcacagggggcagacagcgtggagcccatgttccggcatctcaagaacacctactcagggctgcagctcattatcgtcatcctgccagggaagacgccagtgtatgctgaagtgaaacgtgttggagatacacttttgggaatggctacacagtgtgtgcaagtgaagaatgtggtcaagacctcgcctcagactctatccaacctctgcctgaagatcaatgtcaaacttggtggcattaacaacatcctagtcccacaccagcgctctgccgtctttcaacagccagtgatattcctgggagcagatgttacacaccccccagcaggggatgggaaaaaaccttctatcacagcagtggtaggcagtatggatgcccaccccagccgttactgtgctactgtgcgggtgcagcgaccccggcaggagatcattgaagacttatcctacatggtgcgtgagctgctcatccagttctacaagtctacccgcttcaagcctacccgcatcatcttctaccgagatggggttcctgaaggccagctcccccagatcctgcactatgagctgctggccattcgtgatgcctgcatcaaactggaaaaggactaccagcctgggatcacttacattgtagtgcagaaacgccatcatacccgccttttttgtgctgacaagaatgaacgaattgggaagagtggtaacatcccagctgggacaactgtggacaccaacatcacccacccatttgagttcgacttctatctgtgcagccatgcaggcatccagggcaccagccgaccatcacattactatgtcctttgggatgacaaccgtttcacagcggatgagctccagatcttgacgtaccagctgtgccacacttacgtacgatgcacacgctccgtctctatcccagcacctgcctactatgcccgcctggtggctttccgggcacgataccacctagtggacaaggaacatgacagtggagaggggagccacatatcggggcagagcaatgggcgggacccccaggccctggccaaagccgtgcaggttcaccaggatactctgcgcaccatgtacttcgcttgaaggcagaacgctgttacctcactggatagaagaaagctttccaagccccaagagctgtgccgcccaaatccagaggaagcaaggaggaggagggagggtagggaggagttcagaaggccttgtttccttctacaaagggggcaaaagggtggggaacagggccagtaagccagaccaccagccagaaatctttgatgtccacctcatgacccccacccctccacccatcttgtcacatctggccctgaccccactggaccaagaggggcagcactggtgcccaccatacacacaggtgtctcatgtgactcacagtgctaaagactcatgcctgacagcttgctaaggtcggctctgcagccccgcggacaaaagctggtaggtttgggtttgatactttagatgggagagtgaggggcttgagaaagtgggtgggaggagggaaggattttttaggagccttaatcagaaaaggtctagatttgtttaagaggaaaaacgaaaccagacccagatcaatattttagaatactagatgttttaatgggttgaaaatccagtttgtaggaagatttttaatgctaatgattttggttgctcctcccccagctgacacccctttttcccttattcctttctctctactttgtctaccccaccttacacctcctccctgacagacatccagcccctagtaagacttaaggcactatggcacttagctctgaagtgacacgaccctgtcttccttccgcctactggtgggtaaccagtgccttccctgtaacggtaatgctgcagaactgcaaccttttgtacctttctttggggggatggggtgggggtgggagaggaggtaggtggggaagaaatacccctaacccaacaagcctctagccagagcgccagctactttgcattcaaaggaattaacttccatattcattgagcttttaaaaagatcacaacctcaagatggttaaagtccattgacatttgcactttcagacatgacaagtctaggagctgctgagatgactggcccttggcctttccacttgacgcctccttttctccctgtcgtcgtcccccccccccccccccccccccagccttcccacctgcctgggtctggagttacttacatcgcatttctcattcttggcttcttttttcccctgatggtcaagtcgattatgtttcaatatttcttaactggggtgtcttataacaaatgatctttaggtctaaaataagaaaaaaaaaaagagcaaaaactaaatgttatttttataccataacttgagtctgttgccaaaatctggaaatccctcccatgcccaataagtttacatcccagaaacattgagccatcagaaggaactatgtacctgacttattctttggcctggctaggtagggagagtggttatctccccaaggtggggctcaggctccacccttcccctgtgcagataatatcgttttcttgctgtaggcgccctcctctgcactgccctgtactcttcctgcaagtgcatcttccctttctctagactgttctctgacactttggctcatcccagattccagtgtgtcctgtggacaggctgggggattttgctgctccctatcgcttctgtttacacaaatgaatttttcccagtttcccactagggcatgtgagtgggtggcatgggcctttgttttgttttgttttgttttgtttttgtctccctggataaagatggggtttggctatcttgcagaactggaaaagtagggggtttctagcttggtgcctgctggccttgaggcaaggccccctctttccttaactgttcatttttttcctatcccactgcttgggatgaggagttgcagcttcagtgtggaagttcctctttgtgaggagcctgggcttgggtttgccccaatctggtgatgaagccatgacactttagacctagctcaggcttggaggccagtctgaatcctggcctgtgtgcttagagctaccatttcccctctccagcagcccttgtacagacccagatttgctatgcaaaacagtctatcccaggttctgttctggttggctactttgttcagcaacttcacaaaacgtagcacaaacattgattatggagaaggcatcaggactgttgagtaactcctcctctacttcttccctactggctacggcatgggatgccccatgggcacagcccagctgaagaacagaatggagggctctgggaggaggcagctcactggagagcctacattccttacacaagtgcctaaagagagtgatgccaacactccatctgccctgtccatcgccttcatatagtgtctacttcgtgttcagtcaccctttggggaggggagctctcttgggacaatgggctctgcatgttctcttctttgggtgcatttaggggctgggatcagggcactgttcctggagggtccagtcattcaccagcatttgcaaatatccatagggagctggtggtaaccacctactctcagcaacaagtttatgttctcctttttctctctttgcctcactctctccatttggattttgagctggggcttaaaaagcattttttagcccttgggcattgcacatgccattcatgaaataaaaaagcaagagaagcagtttgggcaatggcaagaaaatgacttcttgctctgatttctttttttttaatctttgagacttgaaaaatatccttgaccttgaggattattcttgtttgaaagatggtgcatgcagtttgagaagtggtgttagcaacaagctttggatttcttggatttggttaagtggtgcttcttacttgtgctctgagaaagtgttggggggaccccagcctcatcctcttggacaggtctcttgctcccttcattctactctcttgcctctcttttctacttatctctttccctgttgtccttttccttttttcaattcactaagcttgtttgctggcctgcctgcctacgtgatgatgaattctctgcatggctatgataatcccactgttagctagcaaggtcaggcttaatactccttggctgcagaagaccaagaatctgttctccaagcctggtgatgttctctctgggcttgactgccatcgatgttatacaaaggcagatcagcaagcctgcctacctggcatgaaatcaggagggcttctgacaacttccacacctgtccactccttggggttggtttctctcattgctttttctagatctggttccatgtctctactggggcctcccttttctgaggatgtcctagggttgagctacttggtttccggtgttggggggttaggggatggacatgggggaagaagaaagtgatcggaagaaaatgggagagaatttggataaaagatgggaaagagcactgtttattgatcatttttccagtctagtctgacccattgggggttgaggtgctattgctgaaccttgggataagcctggggctattgttgatgggaacttaggtttagaataatgatgaggaaggtacctaaaagcatgaaatctccctaaaaacctcctggttcccacctactagatagccccactaaggcctcctcattggctaagcaacaatgttcttggatgggttttgtttttgtttttgtttctgtttttttggggtccagaattcagtaaatgaggctagcactcaggatgggcagccaaggggacaatttgacttctttgctggcccatggggtatctatctgcaaggctggtggacagtgttttagacctggcatcatgtgtaacaaagaagaatggaagttccttccccttcagggtggaaagtcatctcaaactagccaaaatgcagttttggaaactacattgggggaagttattttttatatttactgggcctcggccaatccaggatggtagctgggatgccttccttttaaagtctgatcatggcagggatatgcagggcactctttcctatttagccttctaagcagattggggagaagggattctctggttttctctttccccccttttattaggacttgccttctccctaggcagggagagaggctaggttggtgctctccccttactctattcctactgacttagaacctctggctgctgtttgggagcctaagaatgggagtggagggaatgggctcaaaataaaacagaataaggtggggaaggcagatttccttctttaaaaaggaaaataggaaaccctccaaggattgtgcaagtaaagacaatgtgtcaaatgcactgagtcccctggtgtagtagcaataaggaaaaatgaaatgactttcctgtgcacacagtccaacccgattggtgtgtgatgttgcacttagcagccatctggtgggcatgtgtgactactctgggtttcactttagtttctaaactttttatccctctcaagtccagcatggatggggaaatgtccctggagccccacagctgtgtacttgtttgcatttgtttccctttgagacttgtgtttgtgtcctgcttcgagctgtaccttgtccagtccattgtaaaattttcccaacagctgtaatgtacagttccttctaaagcaagcaacagcagcacaattctgtgttttataaagacaacagtggcttctatttctaaa
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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