2024-03-28 22:07:59, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_035698760 7494 bp mRNA linear MAM 15-JUL-2022 DEFINITION PREDICTED: Canis lupus dingo argonaute RISC component 1 (AGO1), transcript variant X1, mRNA. ACCESSION XM_035698760 VERSION XM_035698760.2 DBLINK BioProject: PRJNA477859 KEYWORDS RefSeq. SOURCE Canis lupus dingo (dingo) ORGANISM Canis lupus dingo Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_064257) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Jul 15, 2022 this sequence version replaced XM_035698760.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: Canis lupus dingo Annotation Release 102 Annotation Version :: 102 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..7494 /organism="Canis lupus dingo" /mol_type="mRNA" /isolate="Sandy" /sub_species="dingo" /db_xref="taxon:286419" /chromosome="15" /sex="female" /tissue_type="muscle" gene 1..7494 /gene="AGO1" /note="argonaute RISC component 1; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 69 long SRA reads, 4 Proteins" /db_xref="GeneID:112642408" CDS 213..2795 /gene="AGO1" /codon_start=1 /product="protein argonaute-1 isoform X1" /protein_id="XP_035554653.1" /db_xref="GeneID:112642408" /translation="
MEAGPSGAAAGAYLPPLQQVFQAPRRPGIGTVGKPIKLLANYFEVDIPKIDVYHYEVDIKPDKCPRRVNREVVEYMVQHFKPQIFGDRKPVYDGKKNIYTVTALPIGNERVDFEVTIPGEGKDRIFKVSIKWLAIVSWRMLHEALVSGQIPVPLESVQALDVAMRHLASMRYTPVGRSFFSPPEGYYHPLGGGREVWFGFHQSVRPAMWKMMLNIDVSATAFYKAQPVIEFMCEVLDIRNIDEQPKPLTDSQRVRFTKEIKGLKVEVTHCGQMKRKYRVCNVTRRPASHQTFPLQLESGQTVECTVAQYFKQKYNLQLKYPHLPCLQVGQEQKHTYLPLEVCNIVAGQRCIKKLTDNQTSTMIKATARSAPDRQEEISRLMKNASYNLDPYIQEFGIKVKDDMTEVTGRVLPAPILQYGGRVSRNRAIATPNQGVWDMRGKQFYNGIEIKVWAIACFAPQKQCREEVLKNFTDQLRKISKDAGMPIQGQPCFCKYAQGADSVEPMFRHLKNTYSGLQLIIVILPGKTPVYAEVKRVGDTLLGMATQCVQVKNVVKTSPQTLSNLCLKINVKLGGINNILVPHQRSAVFQQPVIFLGADVTHPPAGDGKKPSITAVVGSMDAHPSRYCATVRVQRPRQEIIEDLSYMVRELLIQFYKSTRFKPTRIIFYRDGVPEGQLPQILHYELLAIRDACIKLEKDYQPGITYIVVQKRHHTRLFCADKNERIGKSGNIPAGTTVDTNITHPFEFDFYLCSHAGIQGTSRPSHYYVLWDDNRFTADELQILTYQLCHTYVRCTRSVSIPAPAYYARLVAFRARYHLVDKEHDSGEGSHISGQSNGRDPQALAKAVQVHQDTLRTMYFA"
misc_feature 312..704 /gene="AGO1" /note="N-terminal domain of argonaute; Region: ArgoN; pfam16486" /db_xref="CDD:435368" misc_feature 732..884 /gene="AGO1" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:430160" misc_feature 885..1247 /gene="AGO1" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212" misc_feature order(1041..1043,1086..1088,1128..1130,1140..1142, 1194..1196,1215..1217,1221..1223) /gene="AGO1" /note="nucleic acid-binding interface [nucleotide binding]; other site" /db_xref="CDD:239212" misc_feature 1380..2666 /gene="AGO1" /note="PIWI domain, Argonaute-like subfamily. Argonaute is the central component of the RNA-induced silencing complex (RISC) and related complexes. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the...; Region: Piwi_ago-like; cd04657" /db_xref="CDD:240015" misc_feature order(1800..1802,1812..1814,1848..1859,1866..1868, 1890..1892,1899..1901,1911..1913,1923..1925) /gene="AGO1" /note="5' RNA guide strand anchoring site [active]" /db_xref="CDD:240015" misc_feature order(2004..2006,2010..2012,2220..2222,2634..2636) /gene="AGO1" /note="active site" /db_xref="CDD:240015" polyA_site 7494 /gene="AGO1" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN
gcagctggccgggcgctcgcagggggagctgctgcaggctccgcggcggcggcggcaacggaggctgcgggggcagcggcgcgagcggccgggcttggggggggtgccgagcccggcccggaagcccgagcagccggagtgcggggtccctaggcccctcactctgggctccacagtctccaggccgcctgacctccgcacgggtatatgggatggaagcgggaccctcgggagcagctgcaggcgcctacctgccccccctgcagcaggtgttccaggcacctcgccggcctggcattggcactgtggggaaaccaatcaagctcctggccaattactttgaggtggacatccctaagattgatgtctaccactacgaggtggatatcaagccggataagtgtcctcgcagagtcaaccgggaagtggtggagtacatggtccagcatttcaagcctcagatctttggtgatcgcaagcctgtgtatgatggaaagaagaacatttacactgtcacagccctgcccattggcaatgaacgggttgactttgaggtgacaatccctggggaagggaaggatcgaatcttcaaggtctccatcaaatggctagctattgttagctggcgcatgctgcatgaggcccttgtcagtggccagatccctgttcccttggagtctgtgcaagccctggatgtcgccatgaggcatctggcatccatgaggtacacccccgtgggccgctccttcttctcaccgcctgagggctactaccacccgctggggggtgggcgcgaggtctggttcggctttcaccagtctgtgcgccctgccatgtggaagatgatgctcaacattgatgtctcagccactgccttctacaaggcgcagccggtgattgagttcatgtgtgaggtgctggacatcagaaacatagatgagcagcctaagcccctcacggactctcagcgtgtgcgtttcaccaaggagatcaaaggcctaaaggtggaagtgacccactgtggacagatgaagaggaaataccgagtgtgtaatgttacccgccgccctgccagccaccagacgtttcccttgcagctggagagtggacagactgtggagtgcacagtggcacagtatttcaagcagaaatacaaccttcagctcaagtatccccacctgccctgcctgcaagttggccaggaacaaaagcatacctacctgcccctagaggtctgtaacattgtggctgggcagcgctgcattaagaagttgaccgacaaccagacttcgaccatgataaaggctacagctaggtcggccccagacagacaggaggagattagccgcctgatgaagaatgccagctacaacctagatccctacatccaggaatttgggatcaaagtgaaggatgacatgacggaggtgacagggcgagtgctgccggcgcccatcttgcagtacggcggccgggtgagcaggaatcgggccattgccacacctaatcaaggtgtctgggacatgcgagggaagcagttctacaatgggattgagatcaaagtctgggccatcgcctgctttgcaccccaaaaacagtgtcgagaagaggtgctcaagaacttcacagaccagctgcggaagatttccaaggatgcagggatgcccatccagggccagccttgcttctgcaaatacgcacagggggcagacagcgtggagcccatgttccggcatctcaagaacacctactcagggctgcagctcattatcgtcatcctgccagggaagacgccagtgtatgctgaagtgaaacgtgttggagatacacttttgggaatggctacacagtgtgtgcaagtgaagaatgtggtcaagacctcgcctcagactctatccaacctctgcctgaagatcaatgtcaaacttggtggcattaacaacatcctagtcccacaccagcgctctgccgtctttcaacagccagtgatattcctgggagcagatgttacacaccccccagcaggggatgggaaaaaaccttctatcacagcagtggtaggcagtatggatgcccaccccagccgttactgtgctactgtgcgggtgcagcgaccccggcaggagatcattgaagacttatcctacatggtgcgtgagctgctcatccagttctacaagtctacccgcttcaagcctacccgcatcatcttctaccgagatggggttcctgaaggccagctcccccagatcctgcactatgagctgctggccattcgtgatgcctgcatcaaactggaaaaggactaccagcctgggatcacttacattgtagtgcagaaacgccatcatacccgccttttttgtgctgacaagaatgaacgaattgggaagagtggtaacatcccagctgggacaactgtggacaccaacatcacccacccatttgagttcgacttctatctgtgcagccatgcaggcatccagggcaccagccgaccatcacattactatgtcctttgggatgacaaccgtttcacagcggatgagctccagatcttgacgtaccagctgtgccacacttacgtacgatgcacacgctccgtctctatcccagcacctgcctactatgcccgcctggtggctttccgggcacgataccacctagtggacaaggaacatgacagtggagaggggagccacatatcggggcagagcaatgggcgggacccccaggccctggccaaagccgtgcaggttcaccaggatactctgcgcaccatgtacttcgcttgaaggcagaacgctgttacctcactggatagaagaaagctttccaagccccaagagctgtgccgcccaaatccagaggaagcaaggaggaggagggagggtagggaggagttcagaaggccttgtttccttctacaaagggggcaaaagggtggggaacagggccagtaagccagaccaccagccagaaatctttgatgtccacctcatgacccccacccctccacccatcttgtcacatctggccctgaccccactggaccaagaggggcagcactggtgcccaccatacacacaggtgtctcatgtgactcacagtgctaaagactcatgcctgacagcttgctaaggtcggctctgcagccccgcggacaaaagctggtaggtttgggtttgatactttagatgggagagtgaggggcttgagaaagtgggtgggaggagggaaggattttttaggagccttaatcagaaaaggtctagatttgtttaagaggaaaaacgaaaccagacccagatcaatattttagaatactagatgttttaatgggttgaaaatccagtttgtaggaagatttttaatgctaatgattttggttgctcctcccccagctgacacccctttttcccttattcctttctctctactttgtctaccccaccttacacctcctccctgacagacatccagcccctagtaagacttaaggcactatggcacttagctctgaagtgacacgaccctgtcttccttccgcctactggtgggtaaccagtgccttccctgtaacggtaatgctgcagaactgcaaccttttgtacctttctttggggggatggggtgggggtgggagaggaggtaggtggggaagaaatacccctaacccaacaagcctctagccagagcgccagctactttgcattcaaaggaattaacttccatattcattgagcttttaaaaagatcacaacctcaagatggttaaagtccattgacatttgcactttcagacatgacaagtctaggagctgctgagatgactggcccttggcctttccacttgacgcctccttttctccctgtcgtcgtcccccccccccccccccccccccagccttcccacctgcctgggtctggagttacttacatcgcatttctcattcttggcttcttttttcccctgatggtcaagtcgattatgtttcaatatttcttaactggggtgtcttataacaaatgatctttaggtctaaaataagaaaaaaaaaaagagcaaaaactaaatgttatttttataccataacttgagtctgttgccaaaatctggaaatccctcccatgcccaataagtttacatcccagaaacattgagccatcagaaggaactatgtacctgacttattctttggcctggctaggtagggagagtggttatctccccaaggtggggctcaggctccacccttcccctgtgcagataatatcgttttcttgctgtaggcgccctcctctgcactgccctgtactcttcctgcaagtgcatcttccctttctctagactgttctctgacactttggctcatcccagattccagtgtgtcctgtggacaggctgggggattttgctgctccctatcgcttctgtttacacaaatgaatttttcccagtttcccactagggcatgtgagtgggtggcatgggcctttgttttgttttgttttgttttgtttttgtctccctggataaagatggggtttggctatcttgcagaactggaaaagtagggggtttctagcttggtgcctgctggccttgaggcaaggccccctctttccttaactgttcatttttttcctatcccactgcttgggatgaggagttgcagcttcagtgtggaagttcctctttgtgaggagcctgggcttgggtttgccccaatctggtgatgaagccatgacactttagacctagctcaggcttggaggccagtctgaatcctggcctgtgtgcttagagctaccatttcccctctccagcagcccttgtacagacccagatttgctatgcaaaacagtctatcccaggttctgttctggttggctactttgttcagcaacttcacaaaacgtagcacaaacattgattatggagaaggcatcaggactgttgagtaactcctcctctacttcttccctactggctacggcatgggatgccccatgggcacagcccagctgaagaacagaatggagggctctgggaggaggcagctcactggagagcctacattccttacacaagtgcctaaagagagtgatgccaacactccatctgccctgtccatcgccttcatatagtgtctacttcgtgttcagtcaccctttggggaggggagctctcttgggacaatgggctctgcatgttctcttctttgggtgcatttaggggctgggatcagggcactgttcctggagggtccagtcattcaccagcatttgcaaatatccatagggagctggtggtaaccacctactctcagcaacaagtttatgttctcctttttctctctttgcctcactctctccatttggattttgagctggggcttaaaaagcattttttagcccttgggcattgcacatgccattcatgaaataaaaaagcaagagaagcagtttgggcaatggcaagaaaatgacttcttgctctgatttctttttttttaatctttgagacttgaaaaatatccttgaccttgaggattattcttgtttgaaagatggtgcatgcagtttgagaagtggtgttagcaacaagctttggatttcttggatttggttaagtggtgcttcttacttgtgctctgagaaagtgttggggggaccccagcctcatcctcttggacaggtctcttgctcccttcattctactctcttgcctctcttttctacttatctctttccctgttgtccttttccttttttcaattcactaagcttgtttgctggcctgcctgcctacgtgatgatgaattctctgcatggctatgataatcccactgttagctagcaaggtcaggcttaatactccttggctgcagaagaccaagaatctgttctccaagcctggtgatgttctctctgggcttgactgccatcgatgttatacaaaggcagatcagcaagcctgcctacctggcatgaaatcaggagggcttctgacaacttccacacctgtccactccttggggttggtttctctcattgctttttctagatctggttccatgtctctactggggcctcccttttctgaggatgtcctagggttgagctacttggtttccggtgttggggggttaggggatggacatgggggaagaagaaagtgatcggaagaaaatgggagagaatttggataaaagatgggaaagagcactgtttattgatcatttttccagtctagtctgacccattgggggttgaggtgctattgctgaaccttgggataagcctggggctattgttgatgggaacttaggtttagaataatgatgaggaaggtacctaaaagcatgaaatctccctaaaaacctcctggttcccacctactagatagccccactaaggcctcctcattggctaagcaacaatgttcttggatgggttttgtttttgtttttgtttctgtttttttggggtccagaattcagtaaatgaggctagcactcaggatgggcagccaaggggacaatttgacttctttgctggcccatggggtatctatctgcaaggctggtggacagtgttttagacctggcatcatgtgtaacaaagaagaatggaagttccttccccttcagggtggaaagtcatctcaaactagccaaaatgcagttttggaaactacattgggggaagttattttttatatttactgggcctcggccaatccaggatggtagctgggatgccttccttttaaagtctgatcatggcagggatatgcagggcactctttcctatttagccttctaagcagattggggagaagggattctctggttttctctttccccccttttattaggacttgccttctccctaggcagggagagaggctaggttggtgctctccccttactctattcctactgacttagaacctctggctgctgtttgggagcctaagaatgggagtggagggaatgggctcaaaataaaacagaataaggtggggaaggcagatttccttctttaaaaaggaaaataggaaaccctccaaggattgtgcaagtaaagacaatgtgtcaaatgcactgagtcccctggtgtagtagcaataaggaaaaatgaaatgactttcctgtgcacacagtccaacccgattggtgtgtgatgttgcacttagcagccatctggtgggcatgtgtgactactctgggtttcactttagtttctaaactttttatccctctcaagtccagcatggatggggaaatgtccctggagccccacagctgtgtacttgtttgcatttgtttccctttgagacttgtgtttgtgtcctgcttcgagctgtaccttgtccagtccattgtaaaattttcccaacagctgtaatgtacagttccttctaaagcaagcaacagcagcacaattctgtgttttataaagacaacagtggcttctatttctaaa
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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