2024-04-26 07:16:12, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_035161872 2235 bp mRNA linear VRT 04-APR-2022 DEFINITION PREDICTED: Hippoglossus stenolepis vimentin-related 2 (vimr2), mRNA. ACCESSION XM_035161872 VERSION XM_035161872.1 DBLINK BioProject: PRJNA642014 KEYWORDS RefSeq. SOURCE Hippoglossus stenolepis (Pacific halibut) ORGANISM Hippoglossus stenolepis Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Pleuronectiformes; Pleuronectoidei; Pleuronectidae; Hippoglossus. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_061489) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Hippoglossus stenolepis Annotation Release 101 Annotation Version :: 101 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 9.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2235 /organism="Hippoglossus stenolepis" /mol_type="mRNA" /isolate="QCI-W04-F060" /db_xref="taxon:195615" /chromosome="7" /sex="female" /tissue_type="fin" /country="Canada: Haida Gwaii" /lat_lon="51.671 N 130.70875 W" /collection_date="2004-01-15" /collected_by="IPHC" gene 1..2235 /gene="vimr2" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns" /db_xref="GeneID:118112516" CDS 157..1338 /gene="vimr2" /codon_start=1 /product="desmin" /protein_id="XP_035017763.1" /db_xref="GeneID:118112516" /translation="
MAMLRVSSYRRLFEEETWSRSGGLSLPCAGQYRASVRRAAADKCDCDCDKLDFVAAKSLNKEGLNRFAQDRTVIAALNDRLVGLIELARCFEEENEALECQIVELEEKPRSRPAASSSITSAVAQPDYSLDAVVERLRRERDEILCDTEELHKELECLKSGYEEVAQQRVFYQQERQDVAEVVDAVTAECLALREQVAIYEEQLANMEARHKTEVESLLDPADWTTGAAAALGFCSPDMTPVLDVKEFYCQLAECLQYECGAASSAAVRGGDRKQLEVGAAVGSKVTDLPKIQDVGELKMLIPELQKELVELEKCNEELEDEVEMKKAAYMDEIADLKFTMDEMRQQETDFQVQMKEQCEDYKELLSEKMARDMEIVAYRSLLEDEEERLCDL"
misc_feature 361..1323 /gene="vimr2" /note="Intermediate filament protein; Region: Filament; pfam00038" /db_xref="CDD:425436" polyA_site 2235 /gene="vimr2" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN
atgttcacgctatagttagtctcctcagcgacagatgagagatccatcgcctcagtgatacattctcattccttgtgaatattaaaccccggcggggaccctgctgactcttgtatgcctgttgtgttgtagtccagtttgaatctgtctgaagccatggccatgctcagagtgtcttcttaccggaggctgtttgaggaggaaacgtggagtcgaagtggaggattgagtttgccgtgtgcggggcagtatcgggcctctgtcaggcgtgcggccgccgacaagtgcgactgtgactgtgacaagctggactttgtcgctgccaagtctctcaacaaggagggtctgaaccggttcgcccaggaccgcaccgtcatcgctgccctcaacgaccgcctggtcggccttatagagctggctcgttgtttcgaggaggagaatgaggcgcttgaatgtcagattgtggagctcgaggagaagccgagaagtcgcccagccgcctcctcctccatcacctccgccgtggctcaacctgactacagcctggatgcagtggtggagagactgcgcagggagagggacgagattctgtgcgacaccgaggagctgcacaaagagctggagtgtctgaagagcggctacgaggaggtggcacagcagagagtcttctaccagcaagaacgacaggatgtggctgaggttgtggatgctgtgacagcagagtgtttggcgctgagggagcaagtggctatctacgaggagcagctggccaacatggaggcccggcacaagacggaggtggagagtctgctggatccagccgactggaccacaggagcagctgcagctcttggattctgcagcccggacatgactccggtcctggatgtgaaggagttctactgccagctggctgagtgtctccagtacgagtgcggagctgcctcctctgctgcagtccgcggtggtgatcgaaaacaactggaagtgggagctgccgtagggtcaaaggtcacagacttgccaaagatacaggacgtcggtgagctgaagatgctgattcccgagctacaaaaggagcttgtggagcttgagaagtgtaacgaggagctggaggatgaggtggagatgaagaaagctgcatacatggatgagattgctgatttgaagttcaccatggatgagatgcggcagcaggagaccgacttccaggtacagatgaaggagcagtgtgaagactacaaggagctgctcagtgagaagatggccagagacatggagatagtcgcctacaggagtctgttggaggacgaagaggagaggctgtgcgacctgtgagacgaggacgaagagtgagaccgggcggctggagtttggatggatgctcccatacacacacacacacacacggattagaaaacagacaatagtgaaacgcagacccaaatcggcactaggacgaagcgcaaggtaccgacggagcaatttgagcagatgtaaacttatcatgacagattaatgctgtctggaggcctaagccgggccattgataacaggtcgctggcagatgaccccgagactccaagaaagatggaagtgtctaaaagtgggagggaggtgggaggacgggggctcagccaggagtgtgtgtccattcagtgtctggcagggatatttcctcaagtgggttttatctttaccagttcggtgatgtgattcataaatgttttgtccccttagtgtcaaacaagtctgacacacaaacacacacactcacacacacacacaccagaggctgaacagtgcggctccttggagttcttccccctctgattccacctcgtccatcactcacactctgtctgattaccagctcttaacccttgaccccttcactgttaacaaacacattgacctctccctccacccccccgtgaccaaaagcgtctcaccgtcctttagcttttacagtcgcgcattcatgttggttttacatgtaactgtttgcttttcaaatggttcatgaagttgtttccctgcagctcatagacgaatccagcacctggatccttctacgagaaaagagtcattattccttcttagtacacgactttagtaatcctttttttcgtatttgctccaagtcgtctgtgataaatcatcttttgctcctgcttctgcccaagagtcagaatgtgcttcagatttaaattaaataaaagtatttgcttgaga
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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