2024-04-20 23:02:00, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_033435839 2434 bp mRNA linear MAM 02-MAR-2023 DEFINITION PREDICTED: Orcinus orca Meis homeobox 2 (MEIS2), transcript variant X7, mRNA. ACCESSION XM_033435839 VERSION XM_033435839.2 DBLINK BioProject: PRJNA854208 KEYWORDS RefSeq. SOURCE Orcinus orca (killer whale) ORGANISM Orcinus orca Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha; Cetacea; Odontoceti; Delphinidae; Orcinus. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_064560) annotated using gene prediction method: Gnomon, supported by mRNA evidence. Also see: Documentation of NCBI's Annotation Process On Aug 2, 2022 this sequence version replaced XM_033435839.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Updated annotation Annotation Name :: GCF_937001465.1-RS_2023_02 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.1 Annotation Method :: Best-placed RefSeq; Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 02/27/2023 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2434 /organism="Orcinus orca" /mol_type="mRNA" /db_xref="taxon:9733" /chromosome="2" gene 1..2434 /gene="MEIS2" /note="Meis homeobox 2; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 mRNAs, 3 Proteins" /db_xref="GeneID:101285099" CDS 117..1286 /gene="MEIS2" /codon_start=1 /product="homeobox protein Meis2 isoform X7" /protein_id="XP_033291730.1" /db_xref="GeneID:101285099" /translation="
MALVFEKCELATCTPREPGVAGGDVCSSDSFNEDIAVFAKQVRAEKPLFSSNPELDNLMIQAIQVLRFHLLELEKVHELCDNFCHRYISCLKGKMPIDLVIDERDGSSKSDHEELSGSSTNLADHNPASWRDHDDATSTHSAGTPGPSSGGHASQSGDNSSEQGDGLDNSVASPGTGDDDDPDKDKKRQKKRGIFPKVATNIMRAWLFQHLTHPYPSEEQKKQLAQDTGLTILQVNNWFINARRRIVQPMIDQSNRAGFLLDPSVSQGAAYSPEGQPMGSFVLDGQQHMGIRPAGLQSMPGEYVSQGGPMGMSMGQPSYTPPQMTPHPTQLRHGPPMHSYLPSHPHHPAMMMHGGPPSHPGMTMSAQSPTMLNSVDPNVGGQVMDIHAQ"
misc_feature 180..434 /gene="MEIS2" /note="N-terminal of Homeobox Meis and PKNOX1; Region: Meis_PKNOX_N; pfam16493" /db_xref="CDD:435375" misc_feature order(696..698,825..827,834..839,846..848) /gene="MEIS2" /note="specific DNA base contacts [nucleotide binding]; other site" /db_xref="CDD:238039" misc_feature 735..851 /gene="MEIS2" /note="Homeobox KN domain; Region: Homeobox_KN; pfam05920" /db_xref="CDD:428673" polyA_site 2434 /gene="MEIS2" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN
gccgccgctccacgccacgcagcactacggcgcgcacgccccgcaccccaatgtcatgccggccagcatgggatccgctgtcaacgacgccttgaagcgggacaaggacgcgatctatggctctggtctttgagaagtgcgagctggcgacctgcactccccgggaacccggagtggccggcggagacgtctgttcctccgactccttcaacgaggacatcgcggtcttcgccaagcaggttcgcgccgaaaagccacttttttcctcaaatccagagctggacaatttgatgatacaagcaatacaagtactaaggtttcatcttttggagttagaaaaggtccacgaactgtgtgataacttctgccaccggtacattagctgtttgaaggggaaaatgcccatagacctcgtcattgatgaaagagatggcagctccaagtcagatcacgaagaactttcaggctcctccacaaatctcgctgaccataatcctgcatcttggcgagaccacgatgatgcaacttccacccactcagcaggcaccccagggccctccagtgggggccatgcatcccagagtggagacaacagcagtgaacaaggggatggtttagacaacagtgtagcttcacctggcacaggtgacgatgatgatccagacaaggacaaaaaacgccagaagaaaagaggcattttccccaaagtagcaacaaatatcatgagagcatggctcttccagcacctcacacatccgtacccttccgaagagcagaagaaacagttagctcaagacacaggacttacaattctccaagtaaacaactggtttattaatgccagaagaagaatagtacagcccatgattgaccagtcaaatcgagcaggttttcttcttgatccttcagtgagccaaggagcagcgtatagtccagagggtcagcccatggggagctttgtgttggatggtcagcaacacatgggaatccggcctgcaggtttgcagagcatgccaggggagtacgtttctcagggtggtcctatgggaatgagtatgggacagccaagttacactcctccccagatgaccccacaccctactcagttaagacatggacccccaatgcattcatatttgccaagccatccccaccacccagccatgatgatgcacggaggacccccttcccaccctggaatgactatgtcagcacagagtcccacaatgttaaattctgtagatcccaatgttggcggacaggttatggacattcatgcccaatagtataagggaactcaagggaaaaggaaacacacgcaaaaactattttaagactttctgaactttgaccagatgttgacactcaatatgaaattccagacagctgtgattattttttactttttgtcatttttcatcaagcaacagaggaccaatgagacaagaacacaaatgtgaaatcatgggctcactgagacaattctgtccatgtaaagatcctctggaaaaagactccgagagttataactactgtagtataaacataggaactaagttaaacttgtacatttctgttgatcactccgttatgttgcctcaaatagttttagaagagaaaaaaaaaatatatccttgttttccacactatgtgtgttgttcccaaaagaatgactgttttggttcatcagtgaattcactatccaggagagactgtggtatattttaaacctgttgggccaatgaaaaaagaaccatgctggagaccatggtgaacgtctggctgaacctcatccctcggactccggcttcaagaatgtgttttcatgcccggcctttgttcctccataaatgtgtcctttagtttcaaacagatctttatagtttgtgcttcataagccaattcttattattattttgggggactcttcttcaaagagcttgccagtgaagatttaaagacagagcaggggcttcttccaggagttctaagccttggctgtggacaaaacagtcttaagttgggcagctttcctcaacacacaaaaaaagttattaatggtcatagcaccacaactaggactttatccgagactcgaagcttggaggataaaaaggagcaagagaatactgtaacaaacttcgtacagagttcggtctattaattgtttcatgttagatattctatgtgtttacctcaattgaaaaaaaaaaaagaatgtttttgctagtatcagatctgctgtggaattggtattgtatgtccatgaattcttcttttctcagcacgtgttcctcactagaagaaaatgctgttacctttaagctttgtcaaatttacattaaaatacttgtatgaggactgtgacgttatgttaaaaaaaaaagatgttaagtcacaaaatgcggtaataaatatttcatttttgattttt
//
by
@meso_cacase at
DBCLS
This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
[Full Text]