2024-04-26 01:48:45, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_033424642 2369 bp mRNA linear MAM 02-MAR-2023 DEFINITION PREDICTED: Orcinus orca HESX homeobox 1 (HESX1), transcript variant X3, mRNA. ACCESSION XM_033424642 VERSION XM_033424642.2 DBLINK BioProject: PRJNA854208 KEYWORDS RefSeq. SOURCE Orcinus orca (killer whale) ORGANISM Orcinus orca Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha; Cetacea; Odontoceti; Delphinidae; Orcinus. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_064568) annotated using gene prediction method: Gnomon, supported by mRNA evidence. Also see: Documentation of NCBI's Annotation Process On Aug 2, 2022 this sequence version replaced XM_033424642.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Updated annotation Annotation Name :: GCF_937001465.1-RS_2023_02 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.1 Annotation Method :: Best-placed RefSeq; Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 02/27/2023 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2369 /organism="Orcinus orca" /mol_type="mRNA" /db_xref="taxon:9733" /chromosome="10" gene 1..2369 /gene="HESX1" /note="HESX homeobox 1; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA" /db_xref="GeneID:101282554" CDS 1187..1696 /gene="HESX1" /codon_start=1 /product="homeobox expressed in ES cells 1 isoform X2" /protein_id="XP_033280533.1" /db_xref="GeneID:101282554" /translation="
MYPASYRSQQYNSGLRHFSSISTVACNLAIKKEDFQGKEFNLCLHVPSLPNGISLPCTVDHSVPEESVLKYEGYFSPSERLSLKRELSWYRGRRPRTAFTQNQIEVLENVFRVNCYPGIDIREDLARKLNLEEDRIQIWFQNRRAKLKRSHRESQFLMAKKNFNTDLLE"
misc_feature order(1463..1477,1481..1483,1532..1534,1550..1552, 1589..1591,1595..1600,1607..1612,1616..1624,1628..1633) /gene="HESX1" /note="DNA binding site [nucleotide binding]" /db_xref="CDD:238039" misc_feature 1469..1630 /gene="HESX1" /note="Homeobox domain; Region: Homeobox; pfam00046" /db_xref="CDD:425441" misc_feature order(1469..1471,1478..1480,1598..1600,1607..1612, 1619..1621) /gene="HESX1" /note="specific DNA base contacts [nucleotide binding]; other site" /db_xref="CDD:238039" polyA_site 2369 /gene="HESX1" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN
tgattgcgagcttgggcctccgaggaggcggaggtgggttttactgcgcccctggggcgccagccgtgcttccgcgcgtttggttgtaaatcgtaggggacagtcttcccccagcaaggcgtacgtctcctggaaccagagcctcgagtgaggacagcactggggaatttggggcggtttgactactcccgcaacgtttttcgtcagagaccatgaaggagacctccctgctggcgccttctttagtttcctcagattataaccttcccaaacctgcctgaagcgtccagtttcccctctccagcaaaatggtgctggctaactcagatctgagcgatcagttgtgtcgttaacttggctttctggtaaattcgtggacagtagtctccgtaagatttttttctgagcacttgcatatcagtatatacagttaaaaacatgactttgctgccaattcgtcagttcttacctggccttgagagactgacatgccacaattcagacttccatatttcctataaatcacaaaacatctttttaaagtcagggtgcactgatttattatgctggtaactgattagcatttctgttaaagttttggaagaatctttaaatagcttcttcagcctctaactttttttacaggaaagaaaagtgaagctctacttctagaactcggtctggattagaacttctgcctcttttgtccatctctgtatgtccacattccttagagaagaatcattatacagagaaaatggcagaatcactagtgtcttctaaatagccattaatcccaccaatccatcccattttcattcaagaagtataagaaatgctgaataaaaattattagttgcccgattccacagataaattggaataaatccaggcacagtggaacaaatccaaatacagtaacgggaatggaagttacttattttaaactcaaatactagattttaccatgatctcttgaaggacaaatagaatcaagtttttaaagttttaccaggtagacttgcagtatagtttcacagaataatccttagatttcaataaactttcaataagagctctccccttagattgtttatcaactagtcaccctgtagaagagatctttagtttttgaaaggtggtttggagtcagttcttagagtgttactggttcccagctgcttggatgtacccggcatcatacagatctcagcaatacaactctggccttcgacatttctcgtctatcagcacagtggcatgcaacctggctataaagaaggaagactttcaggggaaagagtttaacctatgtctacatgtcccgagtcttcctaatgggatctcattaccttgtactgtggatcactcagtgccggaagaaagtgttttgaaatatgaaggttacttttcaccctcagaaagactttctttgaaaagagagttgagttggtatagaggccgaagacccagaaccgcttttactcaaaaccagattgaagtgttggaaaatgtctttagagtaaactgctatcctggcattgatatcagagaagacttagctcgaaaattgaacctagaggaagacagaatccagatctggttccaaaatcggcgtgcaaagctgaaaagatcccatagagaatcacagtttctcatggccaaaaaaaatttcaacacagatctcctggaatagatagaaaactaaacatggggaattatcttccaattgtggaatataaagaatcaatggggatatcaagtgttaaaaatgtgatgttttcttttctgtgtttaatctgagtattgtcttttttttctgaaaatatattgtaaataattactattataacatggtacctattatacttgggcacttttagttacaataaaggcctttcctatatattttaataaacattttcagaaaaagccagctattttttgtgagcaaatttaatctaataaattagtttgctaaaatcagtaaactcatgactaattgactccacaaatggattccatttacaaaataattcaagtcaaataatctgaagaatggcacaaaggtgtgatttgtttcaataagtttccttcaactgcattttgaaacattatacttaaatatattagtgtgatttattcgtgaatcttttgtccctcttgatttctggcagaaagcagtgagaatttctcaccatatatcaatacaaatccgtatagcattccagtttcaagttgtttttttttaaagcaaagttattattgccaaagtagagacgtaaaatcatgagttgtcttattcatgccattagtattgcattgcacaaaagaactgagctacaaataaatgcaaattttaaaatatt
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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