2024-04-26 08:28:12, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_033422155 6665 bp mRNA linear MAM 02-MAR-2023 DEFINITION PREDICTED: Orcinus orca protein argonaute-4 (LOC101280127), transcript variant X2, mRNA. ACCESSION XM_033422155 VERSION XM_033422155.2 DBLINK BioProject: PRJNA854208 KEYWORDS RefSeq. SOURCE Orcinus orca (killer whale) ORGANISM Orcinus orca Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha; Cetacea; Odontoceti; Delphinidae; Orcinus. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_064559) annotated using gene prediction method: Gnomon, supported by mRNA evidence. Also see: Documentation of NCBI's Annotation Process On Aug 2, 2022 this sequence version replaced XM_033422155.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Updated annotation Annotation Name :: GCF_937001465.1-RS_2023_02 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.1 Annotation Method :: Best-placed RefSeq; Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 02/27/2023 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..6665 /organism="Orcinus orca" /mol_type="mRNA" /db_xref="taxon:9733" /chromosome="1" gene 1..6665 /gene="LOC101280127" /note="protein argonaute-4; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 12 Proteins" /db_xref="GeneID:101280127" CDS 355..2739 /gene="LOC101280127" /codon_start=1 /product="protein argonaute-4 isoform X2" /protein_id="XP_033278046.1" /db_xref="GeneID:101280127" /translation="
MVRHFKMQVFGDRQPGYDGKRNMYTAHPLPIGRERVDMEVTLPGEGKDQTFKVSVQWVSVVSLQLLLEALAGHLNEVPDDSVQALDVITRHLPSMRYTPVGRSFFSPPEGYYHPLGGGREVWFGFHQSVRPAMWNMMLNIDVSATAFYRAQPIIEFMCEVLDIQNINEQTKPLTDSQRVKFTKEIRGLKVEVTHCGQMKRKYRVCNVTRRPASHQTFPLQLENGQAMECTVAQYFKQKYSLQLKYPHLPCLQVGQEQKHTYLPLEVCNIVAGQRCIKKLTDNQTSTMIKATARSAPDRQEEISRLVKSNSMVGGPDPYLKEFGIVVHNEMTELTGRVLPAPMLQYGGRNKTVATPNQGVWDMRGKQFYAGIEIKVWAVACFAPQKQCREDLLKSFTDQLRKISKDAGMPIQGQPCFCKYAQGADSVEPMFKHLKMTYVGLQLIVVILPGKTPVYAEVKRVGDTLLGMATQCVQVKNVVKTSPQTLSNLCLKINAKLGGINNVLVPHQRPSVFQQPVIFLGADVTHPPAGDGKKPSIAAVVGSMDGHPSRYCATVRVQTSRQEISQELLYSQEVIQDLTNMVRELLIQFYKSTRFKPTRIIYYRGGVSEGQMKQVAWPELIAIRKACISLEEDYRPGITYIVVQKRHHTRLFCADKTERVGKSGNVPAGTTVDSTITHPSEFDFYLCSHAGIQGTSRPSHYQVLWDDNCFTADELQLLTYQLCHTYVRCTRSVSIPAPAYYARLVAFRARYHLVDKDHDSAEGSHVSGQSNGRDPQALAKAVQIHHDTQHTMYFA"
misc_feature 364..618 /gene="LOC101280127" /note="N-terminal domain of argonaute; Region: ArgoN; pfam16486" /db_xref="CDD:435368" misc_feature 649..801 /gene="LOC101280127" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:430160" misc_feature 802..1164 /gene="LOC101280127" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212" misc_feature order(958..960,1003..1005,1045..1047,1057..1059, 1111..1113,1132..1134,1138..1140) /gene="LOC101280127" /note="nucleic acid-binding interface [nucleotide binding]; other site" /db_xref="CDD:239212" misc_feature 1303..2610 /gene="LOC101280127" /note="PIWI domain, Argonaute-like subfamily. Argonaute is the central component of the RNA-induced silencing complex (RISC) and related complexes. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the...; Region: Piwi_ago-like; cd04657" /db_xref="CDD:240015" misc_feature order(1714..1716,1726..1728,1762..1773,1780..1782, 1804..1806,1813..1815,1825..1827,1837..1839) /gene="LOC101280127" /note="5' RNA guide strand anchoring site [active]" /db_xref="CDD:240015" misc_feature order(1918..1920,1924..1926,2164..2166,2578..2580) /gene="LOC101280127" /note="active site" /db_xref="CDD:240015" polyA_site 6665 /gene="LOC101280127" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN
gcgcgccccgcgccctctccccgcccgacgggcgcgcgcgctggctccggctcccgctcccgctcccgctcccgctggcggcggcggcggggattgtttttgttgtcgctgaggccggaagagccgcgggagccgggtccctgtccccgggccgggcgccgccgccgccccttgcttagcgcccgcgtctccgcggcgcccccatagcgccaatattccggagatcaagcgttacgcggcggcggcggcggcggcggcggcggcggggcccggagcgggaggcgccggggaccgcggcgaggcggcccccgccgccgccatggaggctctgggacccgggacgtagtagatacaatggtgcggcacttcaagatgcaggtatttggtgatcggcagcctggctatgatggcaaaagaaacatgtacacagcacatccactgccaattggacgggagagggttgatatggaagtgacccttccaggtgagggtaaagaccagacctttaaagtgtctgttcagtgggtatcagttgtgagccttcagttgcttttagaagctttggccgggcacttgaatgaagtcccagatgactcagttcaagcacttgatgttatcacaagacaccttccctccatgaggtacactccagtgggtcgctcctttttctcacctcctgaaggttactatcaccctctgggagggggcagggaggtttggtttggctttcatcagtctgtgagacctgccatgtggaatatgatgctgaatattgatgtatctgcaactgctttctaccgggctcagcctatcattgagttcatgtgtgaggttttagacattcagaacatcaatgaacagaccaaacccctaacagactcccagcgtgtcaagtttaccaaagaaataagaggtcttaaagttgaggtgacccactgtggacagatgaaacgaaaatatcgagtgtgtaatgtgactaggcggccagccagtcatcagacttttcccttacagctagaaaatgggcaagcaatggaatgtacagtagctcaatattttaagcaaaagtatagtctgcaactgaaatacccccatcttccctgtctccaggtgggacaagaacaaaagcatacatacttgccacttgaggtttgtaatatagtggcaggacaacgatgtataaagaagctcacagacaatcagacttccacgatgatcaaagccacagcaagatctgctcctgacagacaagaagaaatcagtagactggtgaagagtaacagcatggtgggcggacctgatccatatcttaaagaatttggtattgttgtccacaatgaaatgactgagctcacaggcagggtacttccagcaccaatgctgcaatacggaggccggaataaaacggtagccacacccaaccagggtgtctgggacatgcgaggaaagcagttttatgctggcattgaaattaaagtttgggcagttgcttgttttgcgcctcagaaacaatgtagggaagatttactaaagagtttcactgaccagctccgtaaaatctctaaggatgcaggaatgcccatccagggtcagccatgtttttgcaagtatgcacaaggtgcagacagcgtggagcccatgtttaaacacctgaaaatgacatatgtgggcctacagctaatagtggttatcttgcctgggaagacgccagtatatgcggaggtgaaacgtgttggagataccctcctgggtatggctacacagtgtgtccaggtaaaaaatgtagtgaagacctcacctcaaaccctttccaacctttgcctgaagataaatgcaaagctcggaggaattaacaacgtgcttgtacctcatcaaaggccctcggtgttccagcagcctgtcatcttcctgggagcggatgtcacgcaccccccagcaggggatgggaagaagccttccattgctgctgtcgttggcagtatggacggccaccccagccggtactgtgccactgtgcgggtgcagacgtcccgccaggagatctcccaggagctcctctatagtcaggaggtaatccaggaccttactaacatggttcgagagctgctgatccagttctacaaatccacacgcttcaaacccactcggatcatctattaccgtggaggggtatccgagggacagatgaaacaggtagcttggccagaactaatagcaattcgaaaggcatgtattagtttggaagaagattaccggccaggaataacctatattgtggtgcagaaaagacatcacacacgactcttctgtgcagataaaacagagagggtggggaaaagtggcaatgtaccagcaggcactaccgtggatagcaccatcacacatccatctgagtttgacttttacctctgtagtcatgcaggaattcagggaaccagccgtccttcacattaccaggtcttgtgggatgacaactgcttcaccgcagatgagctccagttactaacttaccagctatgtcatacctatgtgcggtgcacacgctcagtctctattccagcccctgcctattatgcccgccttgtagcattcagagcaaggtatcatctggtggataaagatcatgacagtgcggaaggcagtcatgtgtcaggacaaagcaatggccgagatcctcaggccttggctaaagctgtgcagatccaccatgatacccagcacacgatgtattttgcctgagagtctcagaaaaagaactcaaccagtttggcacaccatgcaggctcaaaatgtttcaaacgcctactgcctctagagagagccaagttgacttcaggtggtcctctaccagcaactcagaatagttgcactgaatctatacttcgcagcactgtctgatgcatcaacaaaattgagccatttttttaaagtaatagatactcattgattatcttttctgatgcactggactgaatttttacctcatcatgcaaaggctaatcagcctgaactttctaaaggactttatgagaaaggtttctatggactattttgctagctgtggtgttcaccgcatccctctagtcttacaagagaagcttattccttttttctgtattcgtcgagtggggtatatgcataaatgggagagaaaaaccaatctacttcagttcagtgtaactatttaattgtgtgggtcaataggctttttaatggagatttctgacttcgccactgtaaatgcctttaacgagcattaacttttgaaagttttacagagttttattagttttactactttatgtattgatctctacagacttgtgctggtgcaagtacaggctgccaggcaattgcactatatttggctgcagattcagacaggcagttctcttatttggttgacttttgtgaatgtgtaacacatgtgatgcatgtcatggtgacagataacactgccatggtaaaaagtactcatgtttccccctctttgaaaaaaattagcttttagtatttttcagagttttcaaaaatgcccattttatgctgctgtgtggtttgttagatctaaatgattttttaacttttctcatagcaagttaactttggcaataaacattttttaaagtccctcctcttcctccccctgacagtgtagttttttagatgagatttcggtatgatttttatcagctatttcttacagatcataatctgacaatttttgaaactggtcagaaaaggcatatatttccatgccttttttttttttttttttttttttttgcggtacgcgggcctctcactgttgtggcctctcccgttgcggagcacaggctccggacgcgcaggctcagcggccatggctcacgggcccagccgctccgcggcatgtgggatcttcccagaccggggcacaaacctgtgtcccctgcattggcaggcggactctcaaccactgcgctaccagggaagccctccatgcctttttaaagaattctttttatctgttttatagtcacagttggtgtcctgtcactttgttttaaactaagctagaaccaggatgcttccttattgaataggctttgccagtccttaaggtaccttgagtgatgctgcaacttgcaaaaatgtaccagcatttaaaactttattccctgggaatcaaggttactcacacaattacttgtaatggaaattttttgcttctctttcaacctgaaatgtacttggtggggtttccttccttttattaaactaaaactgcatagaaaaggttgctttttcttaatagattctggattgcgttcacagggagagaggattcctttcttgtccaaacaaagggagttgatctaaagcaagcatcagttaaaatgtgggggaaaaggtattttgtatttagtgtagataatactttgtgaatggacaacagttacatagagtcttgatagttccagccagtgtttcccagcccaaattttactgacttggaattctctgtcctggaacctcaggagtgagagctgaaaggagggataaaaggcccagagccactccacatggctgaggaaggtgctgggggaagagatagatgcagtgtggtaaaacggttttgccacctctgtctggaaactgctggtgggggaaacactggatctaatggtgaaggatgttgcttgaactcattagctggtccaaatctgttaaactagccttctcaaaatcccagcaatataaagcactgtttttcttcagtcttgtaaacaagcttgtaaatacgttaaagtttacatttccatgtgctgttgatcagcagcgccaccagtgtttgctgagactggtctcagagttttataatgtatatggagtcctaaagctcattaagatacaagtgcagacgtccttgttctcttcatagagtgggatgaaagcaagctctgtaactgaggcacaacaaaggcaggagtgaagaagatggcagatgttaatttcttaagattttccttttttgcaaatacctcacttggacacacaaatcaggacacgttggtgaggggctggctgctgctttttattcacacttgttcagggagagcacagaaaatacccttcagcttggccaccctggatacaagaggaggaaaaaccgaagtttcctctaggaaaaggatgacttgctggagtccaggatgtgaagaactcttggtggctggctggctggccagtgggcaccccatctgcacttgagtgcctcggacttgcttgttaacaatgcacagaagaagcgtcacttctcaccatctcctggcatgtatggagcagggagcaaggcggagtgccaggaagccctgacgtgcttgcagacgggctatacactcgaccttgaactgtagtttgtaagacctcagtcagtcctagtacactggggcaaatcagtgtagtggtggaggaaaagccgggaggcctatttttataggaaaacagtacctttgaaggtttaatgctgccgttttggacaaaaggaaagaaatatagaagaattaggattgttggaaaaaacttgctgagcggtgaatctttaagaggtaattactgcagaatccgagttgcagcaatactcattgcaagcaggtctgaatgcatagttttaattcggcttgacaatttgaacacgttaaccccttgggactgactgaatcattatgcatgtgtcaatcaatgggaggtgtgcattctctagaagtaggtgtaggctgtttggtttttttttaatgcagcctgttcaggcactgtcatgtggtgtgaaagatttaaatgtagcaatgctaaagagttaacaattttgggataaggcacggggacattaaaagagtggtgaaaatccaaatgttgaaccaattatgttttgttgttgttgttagctgtagagtgaactagctgcccagctgtctgggcaggcagaacatattcattcttactgtaaattctatttgctgcttccaaaggtgatgatttacaagcagacatattctgtatggtctgtattttaggatctggtgcccagcctatatcagagcttacctacctggctcagctacctacccttcctgtgggaaaaggtaatccactgtttaaccaggctcaccctctccgccctgccctagcaaccctttgtggatgtgctgtaagattttcttgctcaatagcaaggtggtagctctgctttcattttaagaaagtggaggctgagggcattgtatcaatactgcttcaactccaaggatttttccttgtaaaattaaagggaagatcttgttatcgattaaccattttcgtaccccttgctattgacatattcatgctctttctatgtctagtagctgaaaaatgtttgcatttgttcatttgactaatggtgtcatttttgtttctatattgttaggcctgtaatgttctaaaatgtattttattaaatttggactggatgtatgtctctagcaatacgaggtactttctaaactattaagggaggggtggtatccccgagttgagataagatgatggttgtttaaattttgcaatttttttttggcctgcagggatattttgtgttcatgtgtccataaaagaataaattggcattcttgtgccaaacattg
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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