2024-04-25 14:56:31, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_033400394 2290 bp mRNA linear MAM 02-MAR-2023 DEFINITION PREDICTED: Orcinus orca Meis homeobox 1 (MEIS1), transcript variant X4, mRNA. ACCESSION XM_033400394 VERSION XM_033400394.2 DBLINK BioProject: PRJNA854208 KEYWORDS RefSeq. SOURCE Orcinus orca (killer whale) ORGANISM Orcinus orca Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha; Cetacea; Odontoceti; Delphinidae; Orcinus. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_064571) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Aug 2, 2022 this sequence version replaced XM_033400394.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Updated annotation Annotation Name :: GCF_937001465.1-RS_2023_02 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.1 Annotation Method :: Best-placed RefSeq; Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 02/27/2023 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2290 /organism="Orcinus orca" /mol_type="mRNA" /db_xref="taxon:9733" /chromosome="13" gene 1..2290 /gene="MEIS1" /note="Meis homeobox 1; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins" /db_xref="GeneID:101270805" CDS 861..2114 /gene="MEIS1" /codon_start=1 /product="homeobox protein Meis1 isoform X4" /protein_id="XP_033256285.1" /db_xref="GeneID:101270805" /translation="
MAQRYDDLPHYGGMDGVGIPSTMYGDPHAARSMQPVHHLNHGPPLHSHQYPHTAHTNAMAPSMGSSVNDALKRDKDAIYGHPLFPLLALIFEKCELATCTPREPGVAGGDVCSSESFNEDIAVFAKQIRAEKPLFSSNPELDNLMIQAIQVLRFHLLELEKVHELCDNFCHRYISCLKGKMPIDLVIDDREGGSKSDSEDITRSANLTDQPSWNRDHDDTASTRSGGTPGPSSGGHTSHSGDNSSEQGDGLDNSVASPSTGDDDDPDKDKKRHKKRGIFPKVATNIMRAWLFQHLTHPYPSEEQKKQLAQDTGLTILQVNNWFINARRRIVQPMIDQSNRAGKSPIVTVFKSRRRKASSSHSPGGPIPVSQGTPYNPDGQPMGGFVMDGQQHMGIRAPGPMSGMGMNMGMEGQWHYM"
misc_feature 1182..1436 /gene="MEIS1" /note="N-terminal of Homeobox Meis and PKNOX1; Region: Meis_PKNOX_N; pfam16493" /db_xref="CDD:435375" misc_feature order(1692..1694,1821..1823,1830..1835,1842..1844) /gene="MEIS1" /note="specific DNA base contacts [nucleotide binding]; other site" /db_xref="CDD:238039" misc_feature 1731..1847 /gene="MEIS1" /note="Homeobox KN domain; Region: Homeobox_KN; pfam05920" /db_xref="CDD:428673" ORIGIN
ttgtgcctgggcgtgcgatttaatggagcgcctctctgcctctccagtgcggccagagctcgcttcgcgcacccacccctgccgaggagcctacttgctgcagcccaatgcattgtgtaagacgcgacctgttatggccaccactacttccgggttctagcattctggtcggaatccacctctccgcctgtgcaacacacactttacacacgcacggggactgcaagcgggcagcatcgatcgtggctcctttaagacaaactcagacagacatttttttttaaccctcctctaatctccctccagtgcagcagttgcaaagagggagggagagagagagagagagagaaagagagcgagcgagagaagagagaaactgattaggaattaggactgattcaagggaagcgagcgctagggctttgtgcatttgaatattaacatttgaggtgttctgaccagaagaagactgagcggatgatcattcattcaccacgttgacaacctcgcctgtgattgacagccggagtggcagaaagccatgagatttggtagttgggtctgaggggcgcttttttttttttaactgattttttggggagagaagatctgcttttttttgcccccgctgctgtcttggaaacggagcgcttttatgctcagtgactcgggagctttgcttcaggtcccatagaccgaagatctgggaccagtagctcacgttgctggagacgttaagggatttttcgtcgtgctttttattttttttttccgggggagtttacgtatttgtttcttttcacactggccttaaagaggatatattagaagttgaagtaggaagggagccagggaggccgatggcgcaaaggtacgacgatctaccccattatgggggcatggatggagtaggcatcccctccacgatgtatggggacccgcacgcggccaggtccatgcagcccgtccaccacctgaaccacgggcctcctctgcactcgcatcagtatccgcacacagctcacaccaacgccatggctcccagcatgggttcctccgtcaatgacgctttaaagagagataaagatgccatttatggacaccccctcttccctctcttagcactgatttttgagaaatgtgaattagctacttgtaccccccgcgagccgggggtggcgggcggggacgtctgctcgtcagagtcattcaatgaagatatagccgtgttcgccaaacagattcgcgcagaaaaacctctattttcttctaatccagaactggataacttgatgattcaagccatacaagtattaaggtttcatctgttggaattagagaaggtacacgaattatgtgacaatttctgccaccggtatattagctgtttgaaagggaaaatgcctatcgatttggtgatagacgatagagaaggaggatcaaaatcagacagtgaagatataacgagatcagcaaatctaactgaccagccctcttggaacagagatcacgatgacacggcatctacccgctcaggaggaaccccgggcccttccagcgggggccacacatcacacagtggggataacagcagtgagcaaggtgatggcttggacaacagtgtagcttcccccagcacaggtgacgatgatgatccagataaggacaaaaagcgtcacaaaaagcgtggcatctttcccaaagtagccacaaatatcatgagggcgtggctgttccagcatctaacacacccttacccttctgaagaacagaaaaagcagttggcacaagacacaggactcaccatccttcaagtgaacaattggtttattaatgcccggagaagaatagtgcagcccatgatagaccagtccaaccgagcaggcaagtcccccatagtgacagtattcaagtcacgcaggcgaaaagcatcctcaagccattcaccgggaggtcccatacctgtaagtcaaggaacaccttataaccccgatggacagccaatgggaggttttgttatggacggtcaacaacacatgggaatcagggcaccaggacctatgagtggaatgggcatgaatatgggcatggaggggcagtggcactacatgtaaccttcatctagttaaccaatcgcaaagcaagggggaaggctgcaaagtatgccaggggagtatgtagcccggggtggtccaatgggtgtgagtatgggacagccaagttatacccaaccccagatgcccccccatcctgctcagctgcgtcatgggccccccatgcatacgtacat
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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