LOCUS       XM_032678527           10326 bp    mRNA    linear   VRT 29-FEB-2020
DEFINITION  PREDICTED: Chiroxiphia lanceolata lymphocyte activating 3 (LAG3),
            transcript variant X4, mRNA.
ACCESSION   XM_032678527
VERSION     XM_032678527.1
DBLINK      BioProject: PRJNA603801
KEYWORDS    RefSeq.
SOURCE      Chiroxiphia lanceolata (lance-tailed manakin)
  ORGANISM  Chiroxiphia lanceolata
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Pipridae; Chiroxiphia.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045638.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Chiroxiphia lanceolata Annotation
                                           Release 100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10326
                     /organism="Chiroxiphia lanceolata"
                     /mol_type="mRNA"
                     /isolate="bChiLan1"
                     /db_xref="taxon:296741"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="isolated red blood cells"
                     /dev_stage="adult"
                     /geo_loc_name="Panama: Isla Boca Btava"
                     /lat_lon="8.2166658 N 82.2666656 W"
                     /collection_date="14-Apr-2017"
                     /collected_by="Emily DuVal"
     gene            1..10326
                     /gene="LAG3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 1 sample
                     with support for all annotated introns"
                     /db_xref="GeneID:116782199"
     CDS             8496..9818
                     /gene="LAG3"
                     /codon_start=1
                     /product="lymphocyte activation gene 3 protein isoform X2"
                     /protein_id="XP_032534418.1"
                     /db_xref="GeneID:116782199"
                     /translation="

MGQRGEFSCAALPLEPQKNEKELEAAARQDICAVEEAWGKDSALHNGNFSLRIEPVRSEDAGLYEARVQYNSEVHSCHVELGVVTVTLSPPNPVEENELLLMSCNSSYRASLVEICWFHNGHLGPPSRTFCSSPGALSILRPAMSDAGSWRCQLRYSDNEIISATYNLQILGFDGPTNPVVYAAAGSAAHLPCSLSYLPSSFQINTVTAHWSHLAGGHLQDWDIFPNLSNRNFPLHLPAVGPGDAGQYRCAVSVGHKTISREVTLAVVTVTPSIQGPVSEGSRLLLICSLTHSRGHERFQWKHLGSVPTKSKLAVATPQNVESSSAQMGPILKIPKVSQKDTGTWECSVYGPEGQLGGVEYELQITSAQVSSPPAIFSGQVTFGLTLTLFLLLAVCVVALALQKRAQTPAFSALEGMIAVPGPWKSMKENQKGKIQQTEC"

     misc_feature    <8631..8738
                     /gene="LAG3"
                     /note="Immunoglobulin like; Region: IG_like; smart00410"
                     /db_xref="CDD:214653"
     misc_feature    8751..8966
                     /gene="LAG3"
                     /note="Immunoglobulin domain; Region: Ig; cl11960"
                     /db_xref="CDD:472250"
     misc_feature    8793..8807
                     /gene="LAG3"
                     /note="Ig strand B [structural motif]; Region: Ig strand
                     B"
                     /db_xref="CDD:409353"
     misc_feature    8835..8849
                     /gene="LAG3"
                     /note="Ig strand C [structural motif]; Region: Ig strand
                     C"
                     /db_xref="CDD:409353"
     misc_feature    8898..8912
                     /gene="LAG3"
                     /note="Ig strand E [structural motif]; Region: Ig strand
                     E"
                     /db_xref="CDD:409353"
     misc_feature    8940..8957
                     /gene="LAG3"
                     /note="Ig strand F [structural motif]; Region: Ig strand
                     F"
                     /db_xref="CDD:409353"
     misc_feature    9030..9296
                     /gene="LAG3"
                     /note="Immunoglobulin like; Region: IG_like; smart00410"
                     /db_xref="CDD:214653"
     misc_feature    9060..9074
                     /gene="LAG3"
                     /note="Ig strand B [structural motif]; Region: Ig strand
                     B"
                     /db_xref="CDD:409353"
     misc_feature    9117..9131
                     /gene="LAG3"
                     /note="Ig strand C [structural motif]; Region: Ig strand
                     C"
                     /db_xref="CDD:409353"
     misc_feature    9234..9251
                     /gene="LAG3"
                     /note="Ig strand F [structural motif]; Region: Ig strand
                     F"
                     /db_xref="CDD:409353"
     misc_feature    9294..9542
                     /gene="LAG3"
                     /note="Immunoglobulin domain; Region: Ig_3; pfam13927"
                     /db_xref="CDD:464046"
ORIGIN      

tttgtttttcacagaccaggaaatgctgttactcttggtatggttatttttttttccttttgaataactactcttgagccagtatgactgtagcctctttttccattattaaggcttctgaactttactttggctcatgattggaccatattgcccatatttcctcctctgtagaagctcatctggtcttacagttcaaacagggggcatacagagcccttggggttaccagtccttcagagtgacttttattttgacttaataagcaacacacagaagaaaattatagtaatttaaaaaaaaaaaaaaaagaaaaagaaaaaatagaaactcctctatctccttcaagtctggaaaaaatgagccctctaagcacctgtatctagggaaaaaacaaccagtccttgccaaactcaggggaaagtccccacacccacatgccatcaccacctcagttcatttaagtccaggagatttttccttccttttccctgtgggttatgtgcctcagctcaggagttatgctcctccactgttttcctctactggagttttcttgcagagcaagaccggctggcttttatttttgagtcttaaaaaaggcactcatgaactctaagggaagccctctcatcagggctgtgagtaagggaaaaacctagggaaatatgaatagatagtgttttattctcataatggtgatcatcaagcttggctccctcattcctgcagagagtctcatatcctagggctgagcaagaggatgccatcgaccatttctcacgccagcactctgcaggtggtgaataggccactacaagagttcttcccatgtcaaggccttgctgtgaaaaacacgtacctaattttcagccagatttttggttttaattttgagcctctggtcctccttatgttcctctgctggagtagagaatctacctctatttcacatcttcttctcatgggaagaaaacatcaaagatggattgtaagagcataaaaatggtcgtaccaatggtctctctatggtgctctgctatggccaatacaagatccctaaggaaagacattgagaatcaaggcatcatgtagaagcttcctgcaagcaacagtcaaggacatcctgagctggcagtcataccagttcatcacattcaaaagccagtgaggaactgatcctccacaaattacctaatctgtatttgaactcatttatactcctgctctccataacatcctaacatcctctaacaataattacgctgtctttgtgacatgcaaaatgaatttcctcttgtttgcagtaaaattgctgcctgacctcaccactgtttccttcagattaggtaaaagagatcaagcatctcaagtttattcatttcaaagcaagatcttcaggctcccaagtcagagttggtttggttttatttttgtaccactctgctaaatccttttcccacatccattttcaaaatatggacacgttccagtaacttgtgctgtaaacagaggtaacgcaatctgttcactccgtgagatcccatttaatacagcatgtatcatctatctccctccctggagccttgtcttcccaggatactgtattatgttgcggaagtgtgattccacatactttgctcctccatgtagaaccttatgttttaattctaagcgtgattttaccagaggttttaggaggtagttacttcccattaacttggccaaatatatgcaccgtgccaggagagacagtcacacctgcagagccctcctaaccatattttgtcattgtaagacatccatgaacatcagaaagcatttagatgttgagcagatcatgtgacagcctagcactggaagctcacgtagtctgaatttctaggacactttcatctcatcagcaaagcgtctgaagtatttacgcagaacacaaaagcattagctgctttatcttctactctcacacatgctgtgcagctaaagagagtcctttggtcttttgtggctttctgagaaaaacctggcagagaagcctataagagtggagagagctctgctcagcatggaatgttcatctcctgtagaatgggacctgacacctgcaaacagaaacttcttagcaccagggaaaattatcaatggcaccaaacaaacaaaaaaaaaatcaagcttaaacccatgttttctgcatgtggcctcaattgcaccacagtgaccagctcctggcagaacctcctaacatttagttggctctctgtcttggaaaaccagacctctcccagccctccttgtgacacaggaggtctcaccccttcttgggaattttgaagtccatttatagttccatctgtttggtcccagcctcctttgagggtaaggaagatttagatcttacaccaagaaagcatgctgtatgtgccagcacagtgagaatgggggtagctccagagccagaggggtctctttgcagtgctaaaggcaagaacacagcaagcagtgattatccataattggaagtgctcaggattttcctgagcctggccctgagcaacccagtctagtctgagagtcactctgctgggagcagaggggtgaaatagagccccagaggtcctttcccacctgaatcttcctgtgatactgtgactaacaaacaagtgggtttatttgattttgtggtgtttttcttagtgaggcagtagaagatatcttacaaaaggatgtaggctgctacctgccatgaggtgccaagtggagaggaaattgaaaaaacagctcagttgccactacattctgaattgcagtctggcacacaattgtgttaatccagcacaaatgcgtagtgttgcagagaggggcaatcccatcttccctttcatctctcctgctgcctctcttttgtcaacactgatgagcagcagagaattgatccagctgaaaactaaactataaaggaataaatccattttgatttacaatgagccctttcagtttaaaaatgcaccatctccctccctagcaattttttgttcaaagtaaagtggttggggatcaccaaatcagagactttattctcttcaggactactctggagcactgctgtgcccctccttgctgtgccatcatccacagcaactttcccagcgattgtattcttctgcaaatgatttttcatagcatcactgctcctttagttaccctctactttttcatatctagctttcccactaagaaagaaacaacatattctctatttagcctgcagcttccagagttccaatgtaccatgagatatgggctcctgttctcctgccatgatgcaccatgaaaacacagcatgtggatcagacccactttttcattgttcctggggacacaggcaaatacgcctagagccagacccctctgtgctctgagcaatgctcatcctccagcatgataaagtgcctcttctctgttggagaaacccaggttactttccagagtagaacacagagaggatttgagccccatgagcagaaggcacatccttctgtggcagtttttctctgaagggatactgtactgtcagttgagagcaacagcagcaataaggatatgagcctggaacatgtggattggcctttctctcttttatggcattttcagagattttgtttgcttgatatttctgctaatgctcacctgctttctgggctatccctggtgtccagcacttgtatgtcatccaactctgctgtgggcactggagcttccagtccactggatcccaaggaccctgcagatggtcagattctttctctccaggtaccccaggaaaaacacattttgggagtcccactctcagaccaaggttcagctcccatcaaagtactcttcagctcatacctgagttaaggcaatctatcaggaccactcagttgctgccccagcttctcagcaacacgttgggtcagtgcctgactccttcacctcagtgtcaaggtcactgtaactaagagcaaagctggcacgtgtctcccatccctctttgctcttgaggaaacccagtgcagccctgggatgtttgggaggctattgcatattttttgattgtattagaagcttgaacactgcaatgagaagggagtcgaaatataacctagtttgctgcatggatttttgtatttaatccaccccaccctctgtgttgcaaaacacagaggttgtggcatcaaaaatatcacttaactaggtattggccaaggtactgatagccataaccatctccacaggtagctgtgatgaccaataaggattctgtaagtgtcccatctctccttgaggaagaatctggaggtcttctgaaagagaatagttacacagtcctccacagcaaatgctggccagttacaagatgccagatgccaaatatgcccatgaatgctgcagattttcttcagtaattaaatcattggggtttttgttatgttttgggaggggtttttagcagaaatgcagcccacaactttactcagatccccccaatgttgtttctgactttctaattcagagctgagtattgtcatacaaagagtactcaccttctagcactgtaaagaaagagactgcagatttgtccaaagaccccataaagctatgttttcttaaaggtgctctcatgggattctgggaagcagggcactgctagactctcctcagtgccatatcagagatctgtggtaactcaggcactgcccccctaaaaaggaccctttcaaaaaagcctcccagtcaggcagccaatcactctgcctcctcctagcacttctgcagtggcacattttggttttacccagatctactgggagatggaaactttctcttttccggtgctcctctcctcactgctttttgggacctgtcatctcagatgaatgcgtcacttctccaagaccaccctctgatgtgttgatgtgtgatgtacccaacccctggggagataacatgccacttccaggcatcatgaagcatgtttggtatccaccctggacttaatttcatatacagaatgcacctctggttggcaccatggccctttgtgtgggaaaagtggcttgcattcctctacctcaggggtgcctattttgatgcattaccctattgtgcatctcacagaaagcctgccaagctgtggacaccagctctttctgcctcacggttctgctgcttgacctctctgcagcaacaaggtgttgacatgggaaccactgcatctgtcccaagtgcccagagaagggcagctccactacttcctctctgcagctgagcttagatttcttttagttgcctaagcttcccagtcagtgccagaagtctcacagttaatcccagtctgatccctgaaaaccttgttgcctgtgcaggtgtctgttgggtaccaacctgcccagcagctcttgctcacaccacatccttgccagaccttcccttctgtttccccaggtgtggctgctttttgtttacagttccttgccatgaagttattagttatctcccattagtaaggaacttggttttgcctgctgtgtttgctttagcactggacaaacagcaatcaggatgttttacatgaggtccttctggcaagcactctatctcaggaacgcccagacaagctgataaccccgtcttcaagtcatggtatggtttcctggatcagctgaagtctgaaaataaattctagagcacctgagaaagtcagcataaagtggaagattgtgactactttcagatttgatggtgcaaggaccaaaacatgaaagtggaatcactcagagaaaaacacggtattacagaaatctggaaacgcagtggaaaattccttcagcaagactaactcaatgatactgcagaacagtgttttctattcctatttttcttggtgagtgtagtttacatccataagacataccaagagagacaagaagagcaatgtattaaggctgtgcacaagacgactgctgcggtgaagtctggaacctggctgaagctactaatgcctaacatggacaaaggagcatttagtgagctgggcttttacgtccctgcccttggctactcctgttgcagcctgcccctcatcccccatggctctgccagggtctcacacatccctgtcagcctctctgcccaggggacccacgtgggcagttctgagaagatgtccctgtgctgatctctctgtggtcactgtcatctgtgcctcggggtcccattctgggagatgacgaaaatgccattcgagggagtcagcatttaaaatgggtcgttagagagaaacgtcacagtgtctttgctaaagatagcctggtgctgagtaaaacagtgcctctaaaatcttccttttacaacatgctcactcagcataataacccctcggccccaaacacccctccccagtgccagtgccaggcagctcctgtcattttcctaagctctccatcagtctcttgtgaccacctcttgggaagctgtagcaggatgggactacgtcctctgctttgctgagtcttagaagagataagcatttcctagagcatggattcctttaaaagtggttttgagggctagagtggaatagtgccagggtgccaaggctacaagagcagagagagttgagatggagggagagagcaatgagctcagtgtgcccctcagtgaagccaggagaggggaagaagatgatgctggactgcagcaatctatgtgtctccccaccatggttccaactcccttctctctctctcaccttcacccacacactcacaccattcttgcactgctgattcaagggaaagaagaggttgatgctttctgcttgaactggtcaccacaaactgtttttcttgaacagtaggaaaaaaacacctcctgacaactgtcacaagttctcccttatctttgctcctctctttctctctcatgtgatcccatggattgttttacacaagagggcatgtgggaacactacaaagcagtccctcagtgacatggaggcacatgaggttgcacctgcacaccaatcccactcctcaggaggttggagagccatgtgtgatgaaagagatgagagctgtcactacaacaggggtctgctgaagcgaggcatagcactggccctcttttgtcctccaccttcaccacccagctgaggaaaaccagagagcaaacaaggatccttccacagttgaaaagtggccactatgagtcacctcccttcccccagcctgaggaaaagccccaacacttgggggatgagccaccgaggggcttgggtgtctgacacatgtcacgaagggctgattaagtccgaaagagtcagagcagtgggctgctggaaagtgtgaaccacaacagtgggggttctctgagacaaaatgggtcccaggatgaggcacatggatggaaatgtattgccctatgtaaaggtcagtagcttaatggcagctaggttgagccccctctgtgcatgagcttgagtgggttttcccagaactgctggaggaggagggtcccttcctcacactcctcttcatgccacagtattcagcccctcttttcagttctgattccttcttctggatgctcctctctatctccttggaccacccgggctttgtcccatattggccctggactctagattgatgagtcacatgtgccctacttggagctcaccacagaccatttcctcacgctgcctgtgaactgaccaatgagaaaaagccaagaaattagctcatttggagtattaaagaaggaaggaaaaagaagatgaagaaaaaaaaaaaccaagaagaaagaacagcagaaataaagaccatcatgttctcgaaagccctgaaacaattagagggaagctgtaagagacggaaagatcaaaccaaaaaaggtaagagatgaaagaaaaacatgaagggcacttgctgggaagtgtcttctacactttttccactggctatgtagaagcgaaatttgtaagaaaaacaacagcgactcaaagaatttccactaaaagatgcttacagctgtgtctctggtccctccctcctctgctctcacgtgcctcaggcttatactggtttcttggtggtgacgcatcttcttagtgatatgaggaaatttgctgcccacctgcaatataagggcatttagtgaagtgctttgatcagagagagagacagcatgagagcaagcacatcccactgacccctctttgcttacccaccaacctctagcaccttctttgcccatgcctcatttttgctgatctcttcaagctttggaccttgtcaagcacgaacccaagcaggtggcagcccctcgcctttcctggatgccaccatgaggccgatgtccctggtgctgttcctcacctttgtcctgctggctttcagtgctggtcacatcctagcaggattagcggagggtgaaagcagggagcagaaaatatgggtcagagaggggagttcagctgtgctgccctgccacttgagccccagaaaaatgagaaagagcttgaagcagctgcccgacaagacatctgtgcagtggaagaggcatgggggaaggactctgccttacacaatggcaatttctccctgcggattgaacccgtcaggagcgaggacgctgggctgtatgaggcacgggtgcaatacaactcagaggtccatagctgccatgtggagctgggggtagttacagtaaccctcagtccacccaatcctgtggaagaaaatgagctgctcttgatgagctgcaactccagctaccgggccagccttgtggagatatgttggttccataacgggcacctgggccccccctccaggaccttctgctcttcacctggggctctctccatcctgcggccagccatgagtgatgcgggctcctggcgctgccagcttcgatactctgataacgagataatttctgccacatacaacctgcaaattctaggttttgatggcccaaccaaccctgtggtctatgctgcagctggctctgcagcccatctaccatgcagcctgagctaccttcccagttcctttcagataaatacggtgacagcccactggagccaccttgcaggaggacacttgcaagactgggacatcttcccaaatctgagtaacagaaacttccccctgcatctccctgcggtggggccgggtgatgcagggcagtaccgctgtgctgtctctgtgggccacaaaacaatcagcagggaggtgaccttggcagtggttacagtgactccaagtatccaaggaccagtttctgaggggagtcgtttgctgctcatctgcagcctcacacactcccggggacatgaacgtttccagtggaagcaccttggctcagtccccactaagagcaagctggctgtggccaccccccaaaacgtggagagcagcagtgcccagatgggacctatcttgaaaatacccaaagtgtcacaaaaggatacggggacatgggaatgcagtgtatatggcccagaaggacaactgggaggagtggagtacgagctgcagatcacaagtgcccaggtctccagccctcctgctatcttcagtgggcaggttacttttgggctcacactcaccctcttccttctgcttgctgtctgtgttgtggctctggccctacagaaaagggcacagactcctgccttctcagcactggaagggatgattgcagtccctgggccgtggaagtcgatgaaggaaaaccagaaagggaagatccaacaaactgagtgctgacaggagcagggacaccagggctagtctgcatgggaggatgaaaatctgtgtgccgtgctgcagagagatgggcgccatgcagacctgtcaggggggtctagggatggcatgaacaatgcagaaggcattgggagctctgtatctgcagaggggctgggagctgtctaccagggcaaggcaagcctcactgctgcagtaaggtggcgagcagcacagatgctttggagctattgggagtatttgagccagtagctattgcctgctttagtgccaaatctctgcctactctttgcctctcctccgtggctcctctcacagtctttctctggtggaacaccaggatgcaggagatggctggaatctgtctttcctgcagcctgatggtgttttctgccccccttgcttgctttcttctccctctgcccgcacttccctgatcactgccctgttgcatattttgagcattttaacttattagaaactcattttagaactgaaaataaatcta

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