2024-04-27 11:21:00, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_027148823 1846 bp mRNA linear VRT 20-APR-2022 DEFINITION PREDICTED: Tachysurus fulvidraco vimentin (vim), transcript variant X1, mRNA. ACCESSION XM_027148823 VERSION XM_027148823.2 DBLINK BioProject: PRJNA826113 KEYWORDS RefSeq. SOURCE Tachysurus fulvidraco (yellow catfish) ORGANISM Tachysurus fulvidraco Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Siluriformes; Bagridae; Tachysurus. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_062520) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Apr 20, 2022 this sequence version replaced XM_027148823.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Tachysurus fulvidraco Annotation Release 101 Annotation Version :: 101 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 9.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..1846 /organism="Tachysurus fulvidraco" /mol_type="mRNA" /isolate="hzauxx_2018" /db_xref="taxon:1234273" /chromosome="3" /sex="female" /tissue_type="muscle, blood" /dev_stage="adult" gene 1..1846 /gene="vim" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 94 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 93 samples with support for all annotated introns" /db_xref="GeneID:113644191" CDS 118..1482 /gene="vim" /codon_start=1 /product="vimentin" /protein_id="XP_027004624.2" /db_xref="GeneID:113644191" /translation="
MANRSTATSRQSSSYTRIFGGERSVSARSCYSSRQHSAPARTARLSYSTVSAPPSRSARVTSANLPRLASETLDFALSSAINVDFKAHRTNEKAEMQQLNDRFACYIEKVRFLERQNKMLNTELAQFRGKGTSRVGDLYEEEMRELRRQVDELNSDKARVEVDRDNLMEDIERLREKLQEEVLQREDAENNLQVFRQDVDNATLARLDLEHKVDSLQEEITFLKKLHDEELVELQAQIQDQHVQIDMDIAKPDLTAALRDVRLQYETLASKNIHEAEEWYKSKFADLSEAAARNTEAIRQAKQDANEYRRQVQTLTCEVDALKGTNESLERQMGELEDNFAMESSSYQETIARMDEEIQNMKDEMARHLREYQELLNVKMALDIEIATYRKLLEGEESRIANPLPNFSSFNLRESMIETKPLIENLSKKVVIKTIETRDSQVIHESTQHHEDLE"
misc_feature 145..387 /gene="vim" /note="Intermediate filament head (DNA binding) region; Region: Filament_head; pfam04732" /db_xref="CDD:428095" misc_feature 388..1314 /gene="vim" /note="Intermediate filament protein; Region: Filament; pfam00038" /db_xref="CDD:425436" polyA_site 1846 /gene="vim" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN
catttgcataaagagtcgagtataaaacccaggctactgtaatgagctcaagctgtggaggagtagagctgctgtagtgaggaccaggtgggtgtaaaaactcaacaggactcgaaaatggcaaatcgatccacagcaacttctcgccagtcctcttcttacacaaggatatttggtggtgagcgcagcgtctccgctcgctcctgttactccagccgtcagcactcagctccagcgcgcacagcgcgtctctcctacagcaccgtctccgctccgccgagcagaagtgcgcgagtgacaagcgcaaacttgccccgactcgcatccgagacgttggacttcgccctgtccagtgccatcaacgtcgatttcaaagcgcaccggacaaacgagaaagccgagatgcagcagctaaatgaccgctttgcgtgctacatagagaaggtgcgctttctagagcggcagaacaagatgctgaacaccgagctggcgcagttcagaggaaaaggaacatcccgagtcggagatctttatgaggaggagatgagagagttacgaaggcaagtggacgagctcaacagtgataaggccagggtggaagtggaccgagataatttaatggaggatatcgaacgcctgagagaaaagcttcaagaagaggtccttcaaagggaagatgctgaaaacaacctccaggttttcaggcaggatgttgataatgcaaccctggctcgtctagacttggagcacaaggtggactccctacaggaggagattactttcctgaagaaacttcatgatgaggagcttgttgagctgcaggcccagatacaagaccagcatgtgcagattgatatggacatagcaaagcctgatctgaccgctgcactgcgagatgttcgccttcagtatgagactctggccagcaagaacatccatgaggctgaggaatggtacaaatctaagtttgccgatctgtcagaggctgctgctcgaaacactgaagcaatccgccaggccaaacaggatgctaatgaatatcgccgccaggtgcagactttaacctgtgaggtggatgcacttaagggcactaacgagtctctggaacgccaaatgggggaactagaggacaattttgccatggagtcctctagttaccaggaaaccatcgctcgtatggatgaagaaatccaaaacatgaaggatgagatggctcgtcacttgcgtgagtaccaagaactgctgaatgtcaaaatggccctggacattgagattgcgacctacaggaagctgctggagggagaggagagcaggattgccaatccactgcccaatttttcctcttttaatttgagagaatccatgatagaaaccaaaccacttattgagaacctgtccaagaaagtggtgattaaaactatagaaacaagagatagtcaagtgatccatgagtctactcagcatcatgaagacctggagtgaactgcatacaaaacctttataagaaaagctcacgaacaatgagagctctttagggagaggtgatatactgtaccagatgggtatttttgtttctgtgacattaaaacagctttaatgtgccttttgccactctagatcagcaggtagagaggtgttttaaataatatagaggttgtaggttagtgaaaaccaacttaacacacaattgctatagattacactgtgcaaattagactccagcaataatcttaactacagtatattgatttgcactgggttttttttggtcagcttccagatggagaatgaatgaatatatgtctttaaacaaacaaacaaagttaataaacctttccaaaaatca
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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