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2024-03-29 16:48:25, GGRNA.v2 : RefSeq release 222 (Jan, 2024)

LOCUS       XM_027135297            1845 bp    mRNA    linear   VRT 20-APR-2022
DEFINITION  PREDICTED: Tachysurus fulvidraco vimentin-related 2 (vimr2), mRNA.
ACCESSION   XM_027135297
VERSION     XM_027135297.2
DBLINK      BioProject: PRJNA826113
KEYWORDS    RefSeq.
SOURCE      Tachysurus fulvidraco (yellow catfish)
  ORGANISM  Tachysurus fulvidraco
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Siluriformes;
            Bagridae; Tachysurus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_062534) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Apr 20, 2022 this sequence version replaced XM_027135297.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Tachysurus fulvidraco Annotation
                                           Release 101
            Annotation Version          :: 101
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 9.0
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1845
                     /organism="Tachysurus fulvidraco"
                     /mol_type="mRNA"
                     /isolate="hzauxx_2018"
                     /db_xref="taxon:1234273"
                     /chromosome="17"
                     /sex="female"
                     /tissue_type="muscle, blood"
                     /dev_stage="adult"
     gene            1..1845
                     /gene="vimr2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 3 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:113635711"
     CDS             88..1254
                     /gene="vimr2"
                     /codon_start=1
                     /product="type III intermediate filament"
                     /protein_id="XP_026991098.1"
                     /db_xref="GeneID:113635711"
                     /translation="
MAMLRVSSYRKLFEEEHPRSTSWLSQRCGTQILSSSARSGVSMIDCPEPDFSAAQALNRESLMRFTQERSIIGALNDRLAVLIDMVRCLEEENESLEAQIIEMEERLAVRPIASVSSSPDCPSYSSLEAVIERLRREKDEILCHKEELKKNLHHIKLKCDEVVEQRTHLQVERKDVAVEVDAVTADCLALREQATIYEEQLATMEQQHEFSIESLCEPEAEDRHDPTVSLQFPSIDLTPAITVIKDYYCQLAESLQFESRAVAIARGQERRNLEKLTGKKVKDNSEVMDVNGLKELIVKLQKELVDLEACGEELEAETEAKKEAHLLEIEELETCICQLEKEEADLQAQMKEQMGDYEELLNEKMALDIEIEAYRALVEMEEERLCYP"
     misc_feature    286..1239
                     /gene="vimr2"
                     /note="Intermediate filament protein; Region: Filament;
                     pfam00038"
                     /db_xref="CDD:425436"
ORIGIN      
acattctccatccagccatgtataaagtctccaggctgaagcagaagccatcgctttccccacctgttgtgtagcttaggagcagccatggccatgctgagagtgtcctcgtaccgcaaactctttgaagaggaacatccaagatcaacttcatggctcagccagcgctgtggaacccagatcctctcctcttctgccaggagtggagtttccatgattgactgccctgaaccggacttctctgcagctcaagctttaaacagggagagtctgatgcggttcacccaggagcgctccataatcggtgcccttaatgatcgcctggcggtccttatcgacatggtgcgatgtctggaagaagaaaatgagtctttggaggctcagattattgagatggaagagagattggcagtcagaccgattgcctccgtctccagcagtcccgactgcccatcatattccagcctggaggctgtgattgagagactgcgcagagagaaggacgaaattttgtgtcacaaagaggagctgaagaaaaacctgcatcatataaaactaaagtgtgatgaggttgtagagcagcggactcacctccaagtggagcgcaaggatgttgccgtggaggtggatgcagtgactgctgactgcttggcactaagagaacaagcaacaatctatgaggagcagttagctaccatggagcaacagcatgagtttagtattgagagtctttgtgagcctgaagctgaagatcggcatgatccgaccgtatctctgcaattcccctccatcgacctcactccagccatcacggttatcaaggactactattgccagctggctgaaagcctacagtttgagtccagggctgttgcgattgccagaggacaagagaggaggaacctggaaaaacttactggaaagaaggttaaggataattctgaggtgatggacgtgaatggtctgaaggagctgattgttaaactgcaaaaggagctcgttgatctggaggcatgtggtgaggaactagaggcagagactgaagcgaaaaaagaggctcacctgctggagatagaggagctggaaacctgcatctgccagctggagaaagaagaggctgacttacaagcacagatgaaggaacagatgggggactatgaggagctgctcaatgagaagatggcactggacatagaaattgaagcctacagggctttggtggagatggaggaggagagattgtgctacccttaagacacacaatatcttgtgtattgctgctgaactaacagacttacatcaaattgcctgtacctggatctactttcgttggatgtcttatcgagtacacatagtatatagatgtattttaaagttaaaccatctctgactggatacattactgtcatttttaatattgtgagactcctgaagggtgctacatttcttttttattttgtttgttttacaaataatcacatttgttactgttttcttaaccttaacacttatagaactctcaagatggtgctaacatgccgaaataaaaaaattataatatatgcccagttttgaaatgtctaaaatagcaataagacacaacgtcattggttttacagcaatctggaaatccatttaaaactcaaaacatttttgtatgaagaatgtgttgatagtttatggttatttttgttttatagctgcacattttaaaaaaaaggagctgtaaagcaaaaataggtctactgtgcaacgtagtacaacaaagattgctgatccaaagccttacatggaaactccttcttcttctacttctttttcttctttgtaattaataaatgataa
//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]