2024-03-29 16:48:25, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_027135297 1845 bp mRNA linear VRT 20-APR-2022 DEFINITION PREDICTED: Tachysurus fulvidraco vimentin-related 2 (vimr2), mRNA. ACCESSION XM_027135297 VERSION XM_027135297.2 DBLINK BioProject: PRJNA826113 KEYWORDS RefSeq. SOURCE Tachysurus fulvidraco (yellow catfish) ORGANISM Tachysurus fulvidraco Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Siluriformes; Bagridae; Tachysurus. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_062534) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Apr 20, 2022 this sequence version replaced XM_027135297.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Tachysurus fulvidraco Annotation Release 101 Annotation Version :: 101 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 9.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..1845 /organism="Tachysurus fulvidraco" /mol_type="mRNA" /isolate="hzauxx_2018" /db_xref="taxon:1234273" /chromosome="17" /sex="female" /tissue_type="muscle, blood" /dev_stage="adult" gene 1..1845 /gene="vimr2" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 3 samples with support for all annotated introns" /db_xref="GeneID:113635711" CDS 88..1254 /gene="vimr2" /codon_start=1 /product="type III intermediate filament" /protein_id="XP_026991098.1" /db_xref="GeneID:113635711" /translation="
MAMLRVSSYRKLFEEEHPRSTSWLSQRCGTQILSSSARSGVSMIDCPEPDFSAAQALNRESLMRFTQERSIIGALNDRLAVLIDMVRCLEEENESLEAQIIEMEERLAVRPIASVSSSPDCPSYSSLEAVIERLRREKDEILCHKEELKKNLHHIKLKCDEVVEQRTHLQVERKDVAVEVDAVTADCLALREQATIYEEQLATMEQQHEFSIESLCEPEAEDRHDPTVSLQFPSIDLTPAITVIKDYYCQLAESLQFESRAVAIARGQERRNLEKLTGKKVKDNSEVMDVNGLKELIVKLQKELVDLEACGEELEAETEAKKEAHLLEIEELETCICQLEKEEADLQAQMKEQMGDYEELLNEKMALDIEIEAYRALVEMEEERLCYP"
misc_feature 286..1239 /gene="vimr2" /note="Intermediate filament protein; Region: Filament; pfam00038" /db_xref="CDD:425436" ORIGIN
acattctccatccagccatgtataaagtctccaggctgaagcagaagccatcgctttccccacctgttgtgtagcttaggagcagccatggccatgctgagagtgtcctcgtaccgcaaactctttgaagaggaacatccaagatcaacttcatggctcagccagcgctgtggaacccagatcctctcctcttctgccaggagtggagtttccatgattgactgccctgaaccggacttctctgcagctcaagctttaaacagggagagtctgatgcggttcacccaggagcgctccataatcggtgcccttaatgatcgcctggcggtccttatcgacatggtgcgatgtctggaagaagaaaatgagtctttggaggctcagattattgagatggaagagagattggcagtcagaccgattgcctccgtctccagcagtcccgactgcccatcatattccagcctggaggctgtgattgagagactgcgcagagagaaggacgaaattttgtgtcacaaagaggagctgaagaaaaacctgcatcatataaaactaaagtgtgatgaggttgtagagcagcggactcacctccaagtggagcgcaaggatgttgccgtggaggtggatgcagtgactgctgactgcttggcactaagagaacaagcaacaatctatgaggagcagttagctaccatggagcaacagcatgagtttagtattgagagtctttgtgagcctgaagctgaagatcggcatgatccgaccgtatctctgcaattcccctccatcgacctcactccagccatcacggttatcaaggactactattgccagctggctgaaagcctacagtttgagtccagggctgttgcgattgccagaggacaagagaggaggaacctggaaaaacttactggaaagaaggttaaggataattctgaggtgatggacgtgaatggtctgaaggagctgattgttaaactgcaaaaggagctcgttgatctggaggcatgtggtgaggaactagaggcagagactgaagcgaaaaaagaggctcacctgctggagatagaggagctggaaacctgcatctgccagctggagaaagaagaggctgacttacaagcacagatgaaggaacagatgggggactatgaggagctgctcaatgagaagatggcactggacatagaaattgaagcctacagggctttggtggagatggaggaggagagattgtgctacccttaagacacacaatatcttgtgtattgctgctgaactaacagacttacatcaaattgcctgtacctggatctactttcgttggatgtcttatcgagtacacatagtatatagatgtattttaaagttaaaccatctctgactggatacattactgtcatttttaatattgtgagactcctgaagggtgctacatttcttttttattttgtttgttttacaaataatcacatttgttactgttttcttaaccttaacacttatagaactctcaagatggtgctaacatgccgaaataaaaaaattataatatatgcccagttttgaaatgtctaaaatagcaataagacacaacgtcattggttttacagcaatctggaaatccatttaaaactcaaaacatttttgtatgaagaatgtgttgatagtttatggttatttttgttttatagctgcacattttaaaaaaaaggagctgtaaagcaaaaataggtctactgtgcaacgtagtacaacaaagattgctgatccaaagccttacatggaaactccttcttcttctacttctttttcttctttgtaattaataaatgataa
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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