2024-11-01 08:31:42, GGRNA.v2 : RefSeq release 226 (Sep, 2024)
LOCUS XM_026987349 3016 bp mRNA linear INV 07-NOV-2018 DEFINITION PREDICTED: Drosophila persimilis putative leucine-rich repeat-containing protein DDB_G0290503 (LOC6593906), mRNA. ACCESSION XM_026987349 VERSION XM_026987349.1 DBLINK BioProject: PRJNA501994 KEYWORDS RefSeq; includes ab initio. SOURCE Drosophila persimilis ORGANISM Drosophila persimilis Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_020825294.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Drosophila persimilis Annotation Release 101 Annotation Version :: 101 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.1 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 4% of CDS bases ##RefSeq-Attributes-END## FEATURES Location/Qualifiers source 1..3016 /organism="Drosophila persimilis" /mol_type="mRNA" /strain="14011-0111.01,24,50" /db_xref="taxon:7234" /chromosome="Unknown" /tissue_type="whole body" /dev_stage="adult" gene 1..3016 /gene="LOC6593906" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 95% coverage of the annotated genomic feature by RNAseq alignments" /db_xref="GeneID:6593906" CDS 1..2883 /gene="LOC6593906" /codon_start=1 /product="putative leucine-rich repeat-containing protein DDB_G0290503" /protein_id="XP_026843150.1" /db_xref="GeneID:6593906" /translation="
MNYGKYLFFVMLVLIPLAIDSLADIGVDQESCFMASDLEDQCGFVCYPIVKPLLQYLARCQEKDSQINQLEEEVRELRVESVKCKSETEALGKQLRNNFCDQKSVLKQALENVQKVQFQLSSELRYLQEDTRHQQTERVDAAVVRKLKIELSSKESLLTDVKSKLIQKYEILEQKEKSIKEKDKLLAEKDEYIKQMMEKYLPRSCETFEGTKGVRTIYVPATEPFSVLCNSIIDGSGWAIVLRELEGSASLDHKLNQYKEKGFGDLHDSFFIGRKNLYLMTREMPHEVFVMLKFLDGSIEVYKGTKVYMGDEEEDYVIKSFNTIPRIGDYSVQQTATSVSLDALFRKQFLPFDDLPEWKELTIMIRETLNIKVYSQNMLNIFIIVLVFFNLSENLTRGSDFHENQESCFVSRELEDQCAAVCYPTVKPLLKYMGICHQKDLHISGMQNQLQDQNEKVTKYKTQVEFLNKKLVDERSSSGLKNDLKETIDKVQNLRLELSEELKKLYRQKNNTVKNQHEEIANVKMQLKRKDEQNEKTMIEKDEIIKQKEKTMEEKDELLKQKKKIMEEKDELLKKKDNTLKNLQEEIANVKMQLKRKDEQNEKTMIEKDEIIKQKEKTMEEKDELLKQKKKIMEEKDELLKKKDNTLKNLQEEIANVKMQLKRKDEQNEKTMIEKDEIIKQKEKTMEEKDELLKQKKKIMEEKDELLKKKDNTLKNLQEEIANVKMQLKRKDEQNEKTMIEKDEIIKQKDKTMEEKDELLKKKDSTLKNLQKEIANVKIQLTSKDELLEQKEEQIKKKDQFIRHILDNADPKISETHTIDVPLAEPDESGWTIILQELEGLASLEKKLAQYKEKPFNNGNDSFFIGRKNLYFMAKATPHEILIQVKFVDGRSSSVQDIRFKVGNAEADYTLRSVNDNLPNRKYSITEMKALMAIQVLMKRKMPFSSRDWKQLTIKFREIQ"
misc_feature 601..>993 /gene="LOC6593906" /note="Fibrinogen-related domains (FReDs); C terminal globular domain of fibrinogen. Fibrinogen is involved in blood clotting, being activated by thrombin to assemble into fibrin clots. The N-termini of 2 times 3 chains come together to form a globular...; Region: FReD; cl00085" /db_xref="CDD:412152" misc_feature 949..951 /gene="LOC6593906" /note="gamma-gamma dimer interface [polypeptide binding]; other site" /db_xref="CDD:238039" misc_feature 1369..>2427 /gene="LOC6593906" /note="chromosome segregation protein SMC, common bacterial type; Region: SMC_prok_B; TIGR02168" /db_xref="CDD:274008" misc_feature 2473..>2844 /gene="LOC6593906" /note="Fibrinogen-related domains (FReDs); C terminal globular domain of fibrinogen. Fibrinogen is involved in blood clotting, being activated by thrombin to assemble into fibrin clots. The N-termini of 2 times 3 chains come together to form a globular...; Region: FReD; cl00085" /db_xref="CDD:412152" misc_feature 2728..2730 /gene="LOC6593906" /note="gamma-gamma dimer interface [polypeptide binding]; other site" /db_xref="CDD:238039" ORIGIN
atgaattacgggaaatatctcttctttgttatgcttgttctgatccctttggctattgattctctggcggacatcggagtggatcaagagtcttgtttcatggcaagcgatctggaagatcagtgcggtttcgtttgctatcccattgttaagcccctgcttcagtatttggccaggtgtcaggagaaggattcgcaaattaaccaacttgaggaagaggtgcgagagctaagagttgaaagcgtcaaatgtaagagtgaaacggaggcgctcggtaaacaattgagaaacaacttttgtgaccagaaaagtgtactaaagcaagccctcgaaaatgtccaaaaggtgcagtttcaactcagttccgagcttaggtatctccaagaagacaccagacaccagcaaacggaacgagtcgatgcagcagttgtgcggaaactgaagattgaattgtcgagcaaggagtcattattaactgatgtcaaatccaaattaatacaaaagtatgaaatattagagcaaaaggagaaatcaataaaggaaaaggataagctattggcagagaaggatgaatatatcaagcagatgatggagaagtaccttccgcgaagctgtgagacctttgaaggcaccaaaggggtccgaacgatctatgttcctgcgacagaaccgttctcggtgctttgtaactcgattatcgatggatctggttgggcaatcgttttgcgagaacttgagggatctgctagcctagaccacaagctaaatcaatataaagaaaaggggttcggagatctgcacgactcatttttcatcggtcgaaagaacctgtatctcatgacacgagaaatgccacacgaagtttttgtcatgttgaaatttctagacggttctattgaagtttataaaggcacaaaagtgtacatgggcgacgaagaggaagactacgttatcaagtcgttcaatacaattccaagaatcggagactactccgtccaacaaacggcaacgtcagtgtcactcgacgctctgttcaggaaacaatttttgccattcgatgatcttcctgaatggaaagaattgaccattatgatcagagagaccttaaatatcaaggtatattcccagaatatgttgaatatttttattattgtgttggttttttttaatttgtcggagaatttgacacgtggttcagatttccatgaaaaccaagagtcttgttttgtatcaagagaactggaagatcaatgcgctgccgtttgttatcccaccgtcaagccgttgcttaaatacatgggaatatgccatcagaaggatctacatataagtggaatgcagaaccaacttcaagaccaaaatgagaaggttaccaaatacaaaactcaagtagaatttctcaataaaaagttggtagacgagcgaagttcttctggcctcaagaatgacctaaaagaaaccatcgataaggtgcagaacctcagattggagctcagtgaagagttgaaaaagttatacagacagaaaaacaataccgtgaagaatcagcacgaagaaatcgcgaatgtgaagatgcaactgaagagaaaggatgaacaaaacgagaaaacgatgatagaaaaggatgaaattataaaacaaaaggagaaaacgatggaagaaaaggatgaactcttaaaacagaagaagaaaattatggaagaaaaagatgaactattaaaaaagaaggacaataccttgaagaatctgcaagaagaaatcgcgaatgtgaagatgcaactgaagagaaaggatgaacaaaacgagaaaacgatgatagaaaaggatgaaattataaaacaaaaggagaaaacgatggaagaaaaggatgaactcttaaaacagaagaagaaaattatggaagaaaaagatgaactattaaaaaagaaggacaataccttgaagaatctgcaagaagaaatcgcgaatgtgaagatgcaactgaagagaaaggatgaacaaaacgagaaaacgatgatagaaaaggatgaaattataaaacaaaaggagaaaacgatggaagaaaaggatgaactcttaaaacagaagaagaaaattatggaagaaaaagatgaactattaaaaaagaaggacaataccttgaagaatctgcaagaagaaatcgcgaatgtgaagatgcaactgaagagaaaggatgaacaaaacgagaaaacgatgatagaaaaggatgaaattataaaacaaaaggataaaacgatggaagaaaaggatgaactcttaaaaaagaaggatagtaccttgaagaatctgcaaaaagaaatcgcgaatgtgaagatacaactgacgagcaaggatgaattattagaacaaaaggaggaacaaattaaaaaaaaggatcagtttattaggcatattttggataatgcagacccaaaaattagcgagactcatacaatcgatgttcctttggcagaaccagacgaaagtggttggacaattattttgcaagaacttgagggattggctagtctagaaaagaagcttgctcaatataaagaaaagccgttcaacaatggaaatgattcatttttcatcggccgcaagaatctgtatttcatggcaaaggccacgccacacgaaattcttatccaagtgaaatttgtggatggcagaagctcttcggttcaagacattcgcttcaaagtgggcaacgcagaagcagactacacactcaggtcggtcaatgataatttaccaaacagaaagtactccattaccgaaatgaaagcgcttatggcgattcaggttcttatgaaacgaaaaatgccattcagttctagggactggaagcaattgaccattaagttcagagagatccaataatagaagaaggaaccattatgcgcccttgatagagaagtatttttatatatttaaatacaatttttgaattcttcggtaatcgatgaagctaccgtgaactaacgttaaaaaaatagcttaaaaaataaaagtt
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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