2024-04-25 20:44:54, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_025442359 5955 bp mRNA linear MAM 15-JUL-2022 DEFINITION PREDICTED: Canis lupus dingo NRDE-2, necessary for RNA interference, domain containing (NRDE2), transcript variant X1, mRNA. ACCESSION XM_025442359 VERSION XM_025442359.3 DBLINK BioProject: PRJNA477859 KEYWORDS RefSeq. SOURCE Canis lupus dingo (dingo) ORGANISM Canis lupus dingo Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_064250) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Jul 15, 2022 this sequence version replaced XM_025442359.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: Canis lupus dingo Annotation Release 102 Annotation Version :: 102 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..5955 /organism="Canis lupus dingo" /mol_type="mRNA" /isolate="Sandy" /sub_species="dingo" /db_xref="taxon:286419" /chromosome="8" /sex="female" /tissue_type="muscle" gene 1..5955 /gene="NRDE2" /note="NRDE-2, necessary for RNA interference, domain containing; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 20 long SRA reads, 1 Protein" /db_xref="GeneID:112656873" CDS 97..3609 /gene="NRDE2" /codon_start=1 /product="nuclear exosome regulator NRDE2 isoform X1" /protein_id="XP_025298144.1" /db_xref="GeneID:112656873" /translation="
MALFPAFAGISGAPDGGSARKELDWLSNPSFCVGAITSLSQQPEEVTALVSEGSPLTRSPLKSEPSDESDSNKKPKQTSRKKKKEKKKKRKHHHKKIKRKHGQTSSSGSEPDSEPDRDKNSRSIGDSKKESEKPSREDNAAAAAAIGHRLVWLEDIQALNGGETFRTDKKPDPANWEYKSLYRGDIARYKRKGDSCLGINPKKQCISWEGASTEKKPSHKHVERYFTKKSVVLMNMDGVAVGSKNEPPSSEPISFIPVKGLDEVVPPVTTWLNPLGIYDQSTTQWLQGQGPSEPESKQPDSQTDRESALLKAKVEEFNRRVRENPRDIQLWMAFVAFQDEVMKSPGLYAIEEGEQEKRKRSLKLVLEKKLAILERAIESNQSSVELKLAKLKLCTEFWEPSTLVKEWQKLIFLHPNDTALWQKYLLFCQSQFSTFTVSKIHSLYGKCLSTLSAVKDGSILSHPALPGTEEAMFALFLQHCHFLRQAGHSEKAVSLFQAMVDFTFFKPDSVKDLPTKGQVDFFEPFWDSGEPRAGEKSARGWRAWMHQQERGGWVVIGADDEDDEPEDEDQEIRDKSLPKWQIWLAAERSRDQRHWRPWRPDKSKKQTEEDCEDPERQVLFDDISPSLIQLSSPDLRFQLVAAFLQFLGVPSDLSPPASCLYLAMDENSIFDNGFYDEKPLTSLNLSFSGISCVGRSDPLGCRRWTRGHNREGEEFIRNIFHLVMPLFSGQERSQLCFSWLRYEMAKVIWCLHTKNKKRLKSQGKNCKKLAKNLLKEPENRNNLCLWKQYAHLEWLLGNTEEARKVFDSALSAAGSRELRDWEVCELSLLYAELEVELLPDPRGASAARAVHVLTRLTESGPYGPYSGPVLAVHILKARKAYEHALQDCLGESWVCSPAPTAPAAPCHRLVSLVKCFMLFQYLTVGIDAAVRVCEQVYAKLKGSTSSGGSSPEDAGSAQSPSSVLEAVMLMHTSLLRFHMKVSVYPLAPLRQALSEALQLYPGNQVLWRSYVQIQSKSPTASKTRRFFDAITRSTKPLEPWLFAIEAEKMRKTLVESVQRVDGRDVHTTIPETGLTHRIKALFENALRSDSGSQCPLLWRMYLNFLVSSGNRERSKGVFYKALQSCPWAKVLYLDAVQHFPEEMQEILDLMTEKELRVRLPMEELELLLED"
misc_feature 586..873 /gene="NRDE2" /note="MTR4-interacting domain (MID) found in nuclear exosome regulator NRDE2 and similar proteins; Region: NRDE2_MID; cd22200" /db_xref="CDD:412062" misc_feature order(586..612,619..624,634..639,643..645,649..693, 700..708,712..720,742..750,760..765,769..774,781..801, 826..837,847..873) /gene="NRDE2" /note="MTR4 binding site [polypeptide binding]; other site" /db_xref="CDD:412062" misc_feature 1042..2040 /gene="NRDE2" /note="necessary for RNA interference; Region: NRDE-2; pfam08424" /db_xref="CDD:429988" polyA_site 5955 /gene="NRDE2" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN
acttcccagagtgcaccgcgagagctaaggcctcactaccggcgtccgcgccccggcgccatttctgtagaggggacggcagcgcggcctgtggccatggcgctgttcccggcctttgctggcattagtggggctccggatggcggcagcgcgaggaaagaattagactggctgagcaacccgagcttttgtgttggagccataacctctctgagccaacaacctgaagaggtcactgccttggtttctgaagggtccccactgaccaggagtcctctgaaatcagaaccctcagatgaaagtgacagtaacaaaaagcccaaacaaacaagcagaaaaaagaagaaagagaaaaagaagaagaggaagcatcaccacaagaaaatcaagagaaaacatgggcagaccagtagcagtggatctgagccagatagtgagcctgatagggacaaaaattccagaagcattggagatagtaaaaaggaatcagagaaaccaagtcgagaagataatgctgctgctgctgctgctattgggcatcgcttggtttggcttgaggacattcaggctctgaatggaggagaaaccttcagaacagataagaagccggatcctgcaaactgggaatataagtctctctacagaggagacatagcaagatacaagaggaaaggagactcctgccttggcattaaccccaagaagcagtgtatatcctgggagggggcttccacggaaaagaagccttcgcacaagcacgttgagcgctattttacgaagaagagtgtggtattaatgaacatggatggagttgccgttggcagtaagaacgaacctccctcatctgagccaatctcgtttatcccagtgaagggcctggatgaggtggttcctcccgttacaacctggttgaaccctctggggatttacgatcagtccaccacgcagtggttacaaggacagggtccttcagagccagaatcgaagcagccagactcacagacggacagagagagcgcactactcaaggccaaggtggaggagttcaacaggagagtccgggagaacccccgggacattcagctctggatggcgtttgttgcttttcaggacgaagtcatgaaaagccctggcctgtatgccatcgaggagggagagcaggagaagcggaagcggtctctgaagctggttctggagaagaagctggccatcctggagcgggccattgagagcaaccagagcagcgtggagctgaagctcgccaaactgaagctctgcacggagttctgggagccctccaccctggtcaaagagtggcaaaaactgatattcttacatcccaacgatacagccctttggcagaagtaccttttattttgccagagccagtttagcaccttcaccgtgtcaaagatccacagtctttatggaaaatgcctgagcaccttgtctgcggtgaaggatggcagcatcttatcgcaccctgccttgccgggcaccgaagaggcaatgtttgcgctctttcttcagcactgccacttcctgcggcaggccggtcactcagagaaggcggtctctctgttccaggccatggtggacttcaccttcttcaaacccgacagcgtgaaagacctgcctaccaagggacaggtggacttctttgagcccttctgggacagcggggagccccgggccggggagaagagcgcccgaggctggagagcatggatgcaccagcaggagcgagggggctgggtggtcatcggtgcagatgatgaggatgatgaaccagaagacgaggaccaggaaataagagataagagcctgcccaagtggcagatctggcttgccgccgagcggtcccgagaccagaggcactggcggccatggcgccctgataagtccaagaagcaaactgaggaagactgtgaggaccctgagagacaggtgctgttcgatgacatctcgccatctctgatccagctctccagcccagatcttcggtttcagctggtcgcagcctttctgcagttcctgggcgtgccctctgacctcagccccccagcctcctgcctctacctggccatggatgagaacagcatctttgacaatgggttttatgatgaaaagccgttgacttctctcaacctttccttttctggcatcagctgtgtgggccgctcagacccactgggctgccggcgctggacccggggtcacaatcgagagggcgaggagttcatccgcaacatctttcaccttgtgatgcctctgttttcaggccaggagaggtctcagctctgcttctcctggctacggtacgagatggcgaaggtcatctggtgtcttcacactaaaaacaagaaaaggttgaagtcgcaaggaaagaactgcaaaaaactagccaaaaatctccttaaggagccagaaaaccgcaacaatctctgcctctggaagcagtatgcgcacctggagtggctgctgggcaacacggaggaggcccggaaggtgttcgacagtgcgctcagcgcggcagggagcagggagctgagggactgggaggtgtgtgagctcagcctgctgtacgccgagctggaggtggagctgttgccagacccgaggggggcctctgcggcccgcgccgtccacgtgctgaccagactgaccgagagtggtccctacgggccctactctgggccagtcttggccgtccacatcctgaaagctcggaaggcatacgaacatgcgctgcaggactgtctgggggagagctgggtctgcagtcccgcccccaccgcccctgcagcgccctgtcaccgcctcgttagcctggtgaagtgcttcatgctcttccagtacttgactgtggggatcgacgccgctgtgcgggtatgcgagcaggtgtacgcaaaactgaagggctccacttcctccggtggctccagccccgaggacgcaggcagcgcacagagcccgagcagcgttcttgaggctgtcatgctgatgcacaccagcctgctccgattccacatgaaggtcagcgtttaccctctggctcccctgcggcaggcactctcggaggccctgcagttgtatccgggcaaccaggttctttggaggtcctatgtgcagattcagagtaagtcccccacagccagtaagaccagaagattcttcgatgccattaccaggtctaccaagcccttggagccttggttgtttgcgattgaagccgagaagatgaggaagacgttggtggaaagtgttcagagggtggatggcagagatgtccacaccacgattcccgagactggcctgacgcatcggatcaaagccctgtttgaaaatgccttgcggagtgacagcggcagccagtgccccttattgtggagaatgtatttgaatttcttggtttcctcaggaaacagagagaggagcaaaggcgtgttctacaaagccctgcagagttgtccttgggcaaaggtgctgtacctggacgctgtgcagcacttccctgaggagatgcaggagatcctggacctgatgacagagaaggagctccgggtgcgcctgcccatggaggagctcgagctcctgctcgaggactagagcccaggcaggagggtgccgacgtggaccatgggcctgagtgtgcttgcaagacctctgcctttgaagtttctgatcttagtgtttgtacctaggctatccgtgtcttacctcttgcacattttgggatgtgcagacaacctagaagcttctgtttgcatattatatatgtgaccatgtggacgtgtaggtgagaaccgtgcccagtgatactgaatgtcccacggtggcccggttggtcccacccttcctccgcccagccagtgtgccctgtgggttggcccccttggtggtcctgcccggggtctctgggccttgcggtgatgccagggaagctctggttactcaaccctagaaccggtccccaggctggtgaggagagcagattgcccatctcctcgggccagagcaaagcttgggtgctctggcctctacccagcgtacccctaagccccccttcctgccactgcccagctgcagaccagcagtgtctgggtgcctgttagggacgcagcctcgcaggtgcacctcagcccagctgccagtctacaggtgaccaggagccctgggggctcgggtgcacccacgtgtggcaagccctgcccaagggaagggccctgctgcagaggggcaggcggccacgtgaggagagtgcagacccagccctgcccgagatgggccacgtccctgattctgagggctgtgagtggagtgaaatgtaaatacccacgttcagaccactttcttctgaaaaggacctgccttgcagttattagctcttaaagcagtttcctcccagttaattattctgaggtcctgctctaaaaaacccaaaaaaaacccaaaaacctaaaagccatgatgtctgtaattgctgaagttgtatttctttggcatcccatgcagaaaagccagtgtgtggctagagagggatggacaccggggagacgggcggcctgagtggccacttgcctcagctgccccacctccttcccagcttgcacatggaagtgcccagaacggggagaagtgcggcagtagatggggaaggggaggctcgcactggtctgaaggccctggagatggaggaggttcctgaatggaaggaagcacgaggggtggcagggcaggggggccctcaggcggccgcgggttccccgcaggagcaccacactttgctcctgccccagggtgccaagacgccgtgtgaggtcacctgatctgcagaccttccagcgccgaaagctgtttccttaaagccatggccaccctctcagcctttgttgctgagacagtggagacacttctccgtgagctgctgtcagctgggcaagaggtgtggagtctgcatccagtcctcacccaggagcctccacctgcttgctgctgctgagtgccagtgtggaggctgcagaaacaggatgaactgctggagggggagcacgctttattggggacagagcactgcacgtgacccacagaggaaggcagcccagggggtgtcctacacatcacgcgcaaaaaggtacacgggaggttttgctaagaaagatcaactggaacatggtttcctccgggggcttcccccacctcctccctcggaggggtcaggacacgcccaaccatctccttgaaggcagctctggtccgctagagatacagtccctcgggggtgccctcttgttttttataaagaacattttctttagatttcttgaagtcttcatttgttactttcatccgacgctctctcaaggccatcagaccagcctctgtgcagatggcctgtaagaaagaatggtatgttcagaaagggaaatactttttatttgcattctaacaactcgagagcgactttgagtgaggcgtgagacgcgcagactaaacaaactgcttaagccatttggggaaaaaagatctttttgaatgttttacacattgtaattattttctcagaggatcagaagtggctttgaggggaggacagactccggttctaaccagcgggtgacctggtagggaagttctcaatgtgcagggagcaatgttcccaggccacggaggcatttacaccagagagcatccatttcatttacggtcatgagagaaaaggcgtaaatctcaggacaatatttatggtgatacgtttattttctcagtcatcacttgtcaaaagtaaaactagaacccaggcaacatgacaggacaaaaacacagtcctgacactgaagtttctatctggttttggccttcaggatatttcaaatggtttagcaaaaaagaaaatgttatttgtgaacaaaaagataaggcaaagcaataaaatggtaacttttgataaatcga
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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