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2024-03-29 02:14:10, GGRNA.v2 : RefSeq release 222 (Jan, 2024)

LOCUS       XM_025425804            3448 bp    mRNA    linear   MAM 15-JUL-2022
DEFINITION  PREDICTED: Canis lupus dingo claudin 4 (CLDN4), mRNA.
ACCESSION   XM_025425804
VERSION     XM_025425804.3
DBLINK      BioProject: PRJNA477859
KEYWORDS    RefSeq.
SOURCE      Canis lupus dingo (dingo)
  ORGANISM  Canis lupus dingo
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae;
            Canis.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_064248) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Jul 15, 2022 this sequence version replaced XM_025425804.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: Canis lupus dingo Annotation Release
                                           102
            Annotation Version          :: 102
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.0
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3448
                     /organism="Canis lupus dingo"
                     /mol_type="mRNA"
                     /isolate="Sandy"
                     /sub_species="dingo"
                     /db_xref="taxon:286419"
                     /chromosome="6"
                     /sex="female"
                     /tissue_type="muscle"
     gene            1..3448
                     /gene="CLDN4"
                     /note="claudin 4; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 24 long SRA reads, 10
                     Proteins"
                     /db_xref="GeneID:112646147"
     CDS             2009..2641
                     /gene="CLDN4"
                     /codon_start=1
                     /product="claudin-4"
                     /protein_id="XP_025281589.1"
                     /db_xref="GeneID:112646147"
                     /translation="
MASMGLQVMGIALAVLGWLGAILSCALPMWRVTAFIGSNIVTSQTIWEGLWMNCVVQSTGQMQCKVYDSLLALPQDLQAARALMVVSIILAALGVLLSVVGGKCTNCVEDESAKAKTMIVAGVVFLLAGLLVMVPASWTANNIIRDFYNPLVVSGQKREMGASLYVGWAASGLLLLGGALLCCNCPPRADKPYSAKYSAAARSAPASNYV"
     misc_feature    2018..2512
                     /gene="CLDN4"
                     /note="PMP-22/EMP/MP20/Claudin family; Region:
                     PMP22_Claudin; cl21598"
                     /db_xref="CDD:451326"
     polyA_site      3448
                     /gene="CLDN4"
                     /experiment="COORDINATES: polyA evidence [ECO:0006239]"
ORIGIN      
accagaatgcctcctgccttcctgagtgccttgggcattcattgagcacccctgcttctgtcctcggggagccccccacctcgcagacgggccagctgtgtttactgccaaccacaatgcaagacctcaacttccccaccatgccaggtggtcccagccagcactgtgatttcccaagccatccacacggaacctccacggcctccagtgtgcccagggcccacagatgactccaatctaaatcacacaagcttgctgattgttccgtaagaagctctaggacacgaggacatgtggccaccccagggtgccgggttcggtgctggacaatgctgggagctaagggatgtgttggagccctggtacctgaggagcccccagtctggtggtgaccatgtggagggtgaggggttcccttgatctagccggggtgaggcccaaccactctcccccataaagacccccgcaagccccaccctgctctctttcgcctccagagatgtctaaggtgtgtggacacctctttgcctggcatccaatgcccttgctcatcctggggcttggtgacacttgggacagagatttctggccctttctccctccccccaccaaccccaggtctggtctgactggattcctccaggttcctagaactagctgcatttccctagctcccgtacctttgccctccatgtttcttccccccaaatgtcctccttcactcagccctgctgccttgcacaactcccaggggacccatctgtggtgattcctgccctcgatgacctgtgcacagaacccaagactatagcacggccggggttgtggtgcagggctcctctcccttccaagccccctccccctctctccatgtggtaggagtcctgcctccccttccaagtcccgtgggactttgcccccaacctggttttatctgaccaccgctctgtgtgtcttcacagagtaaacagctttttgctgggcttgtgctcccagggtctgggccacggcttgctctgggtgacctcccccagaatctggcccagtggcctccatcctggcagcaaccagccgaaactctcctggtgggggggggagggcaggcttccttatctcttccaccaaaagacctcattcctctggcagggctaggaagtctggcggtggtcagggaagggccaacaggtgacagacccaggagtccgcccccgccccccccagctgagttccccaaagtgccctcattaggcattaggccaacaccaaaatcgctggtgaggcaagtgcacagatgatgagagtcagaataggagtgatcaggtcagaggggaaggtgataaggatggggctacagtaatcagggtggggctttttgacattcccaggactctgccctcagatcctctctctgacggttccccactctgtctgcccacccaagcctagaacaagggtgcccctagggttggggatcctggtctttaggacccgaccctggctggggctggctaccccatgcgtccaggggcctgtggtctgtgactcagtgtctttctccaggctgacctcagcatgggcctgggggctgggagacagggcagtttcccctgagactggctctccaggatcttgactcaggggcccaaggctgaggtcctgcagtgcctttgttggccttggctcaggaatccagataaactggtcagggggcaggccccagggaccgaaacccctccctctgctcccgccctcccacacagccatataactgctcctgtcttggggcgagagccactggctgaaaggaactggtctgggtccgctcacctggcttgtccttctgactgcggagagctggggagctgatccaaccgcctctgcctctggactccaagtgaaagtcttccctgtggacgcagagtgtctgtcctcaccgcttggatcctacagccctttgggtcggacccgcacaggcttccaggtcgtagaccccagcggacggcgagccatggcctccatggggctgcaggtgatgggcatcgcgctggccgtgctgggctggctgggcgccatcctgagctgcgcgctgcccatgtggcgcgtgacggccttcatcggcagcaacatcgtcacgtcgcagaccatctgggagggcctgtggatgaactgcgtggtgcagagcaccggccagatgcagtgcaaggtgtacgactcgctgctggcgctgccgcaggacctgcaggcggcgcgcgccctcatggtcgtcagcatcatcctggccgcgctgggcgtgctgctgtccgtggtgggtggcaagtgcaccaactgcgtggaggatgagagcgccaaggccaagaccatgatcgtggcaggcgtggtgttcctgctggccggcctgctggtcatggtgccggcgtcctggacggccaacaatatcatccgggacttctacaacccgctggtggtctccggccagaagcgggagatgggcgcctctctctacgtgggctgggccgcctcgggcttgctgctgctcggcggggccctcctctgctgcaactgccctccccgcgcggacaagccctactcggccaagtactcggccgcagcccgctccgccccagccagcaactacgtgtagggtgcggccgctcgccactgcgctgtcccgccactgcgctgtcccgccggcctcgtttctcccccgactgaaggtgcagccctcgagcccaggatggccctgcgtaggccacaggctgcccggggctgggcgagcagggactgagccgggccccatctagtccccttggacgtctacccgaggccccctctacgccagcaagagactcctgtgccaccgtccacccgcggatacggaaaggggacagaagtgacagggtgtggctggggaggaagagctggctcctgctggtcaggacggctcagccctgaattggctcaggctctgcctccccatggggccctgcccactcctgtgttggccaggaggatggctggggcctcacttacccacctgaccatggagccagagttgacacagagttgacagacgggtttagaggggaggggtgaaggtgccacaaactggtttgggtagtggtggggaggaggccggggaggctgcccagaccgcccgcaccccttcctgcccccaccctgcagcctcagggctctgcctcagcagcaggacccccaggccttttgtgactgggcgacatctggatcctgccacccctgccaaggtcactgggagtcctggggacctgctgtgggggggtggggggatggtctttctcgggccttcactcccaggaagtcctgggcctctttgctgcctcctctgtagttggttttgtaacttatgtagatctgtttgtcatggtaattaccattattttctacaataaatgggacctgtgcacaggaa
//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]