2024-04-19 11:56:04, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_025313793 289 bp mRNA linear PLN 27-JUN-2018 DEFINITION Rhizophagus irregularis DAOM 181602=DAOM 197198 hypothetical protein (GLOIN_2v1524752), mRNA. ACCESSION XM_025313793 VERSION XM_025313793.1 DBLINK BioProject: PRJNA471752 BioSample: SAMN02744054 KEYWORDS RefSeq. SOURCE Rhizophagus irregularis DAOM 181602=DAOM 197198 ORGANISM Rhizophagus irregularis DAOM 181602=DAOM 197198 Eukaryota; Fungi; Fungi incertae sedis; Mucoromycota; Glomeromycotina; Glomeromycetes; Glomerales; Glomeraceae; Rhizophagus. REFERENCE 1 (bases 1 to 289) AUTHORS Chen,E.C.H., Morin,E., Beaudet,D., Noel,J., Yildirir,G., Ndikumana,S., Charron,P., St-Onge,C., Giorgi,J., Kruger,M., Marton,T., Ropars,J., Grigoriev,I.V., Hainaut,M., Henrissat,B., Roux,C., Martin,F. and Corradi,N. TITLE High intraspecific genome diversity in the model arbuscular mycorrhizal symbiont Rhizophagus irregularis JOURNAL New Phytol. (2018) In press PUBMED 29355972 REMARK Publication Status: Available-Online prior to print REFERENCE 2 (bases 1 to 289) AUTHORS Tisserant,E., Malbreil,M., Kuo,A., Kohler,A., Symeonidi,A., Balestrini,R., Charron,P., Duensing,N., Frei Dit Frey,N., Gianinazzi-Pearson,V., Gilbert,L.B., Handa,Y., Herr,J.R., Hijri,M., Koul,R., Kawaguchi,M., Krajinski,F., Lammers,P.J., Masclaux,F.G., Murat,C., Morin,E., Ndikumana,S., Pagni,M., Petitpierre,D., Requena,N., Rosikiewicz,P., Riley,R., Saito,K., San Clemente,H., Shapiro,H., van Tuinen,D., Becard,G., Bonfante,P., Paszkowski,U., Shachar-Hill,Y.Y., Tuskan,G.A., Young,P.W., Sanders,I.R., Henrissat,B., Rensing,S.A., Grigoriev,I.V., Corradi,N., Roux,C. and Martin,F. TITLE Genome of an arbuscular mycorrhizal fungus provides insight into the oldest plant symbiosis JOURNAL Proc. Natl. Acad. Sci. U.S.A. 110 (50), 20117-20122 (2013) PUBMED 24277808 REFERENCE 3 (bases 1 to 289) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (27-JUN-2018) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 4 (bases 1 to 289) AUTHORS Morin,E., Chen,E.C.H., Charron,P., Grigoriev,I.V., Roux,C., Martin,F.M. and Corradi,N. TITLE Direct Submission JOURNAL Submitted (08-JAN-2018) UMR 1136 IAM, INRA, route d'Amance, Champenoux 54280, France REFERENCE 5 (bases 1 to 289) AUTHORS Kuo,A., Tisserant,E., Malbreil,M., Kohler,A., Symeonidi,A., Balestrini,R., Charron,P., Duensing,N., Frei-dit-Frey,N., Gianinazzi-Pearson,V., Gilbert,B., Handa,Y., Hijri,M., Kaul,R., Kawaguchi,M., Krajinski,F., Lammers,P., Lapierre,D., Masclaux,F.G., Murat,C., Morin,E., Ndikumana,S., Pagni,M., Petitpierre,D., Requena,N., Rosikiewicz,P., Riley,R., Saito,K., San Clemente,H., Shapiro,H., van Tuinen,D., Becard,G., Bonfante,P., Paszkowski,U., Shachar-Hill,Y., Young,J.P., Sanders,I.R., Henrissat,B., Rensing,S.A., Grigoriev,I.V., Corradi,N., Roux,C. and Martin,F. CONSRTM DOE Joint Genome Institute TITLE Direct Submission JOURNAL Submitted (05-JUL-2013) DOE Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598-1698, USA COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. This record is derived from an annotated genomic sequence (NW_020269277). FEATURES Location/Qualifiers source 1..289 /organism="Rhizophagus irregularis DAOM 181602=DAOM 197198" /mol_type="mRNA" /strain="DAOM 197198" /db_xref="taxon:747089" /chromosome="Unknown" /note="sequenced strain was DAOM 197198; coidentical strain: DAOM 197198 = DAOM 181602" gene 1..289 /locus_tag="GLOIN_2v1524752" /db_xref="GeneID:36864093" CDS 43..249 /locus_tag="GLOIN_2v1524752" /note="expressed protein" /codon_start=1 /product="hypothetical protein" /protein_id="XP_025186518.1" /db_xref="GeneID:36864093" /db_xref="JGIDB:Rhiir2_1_1524752" /translation="
MKIQKPKKKIKNKIKQTKDELNDKLEHTKDELYDKLEQTKDELKQELKEVKTLLTNLINNLNINSNNI"
ORIGIN
tttaattttcctccattcatcagtaagaaattaaaagaattaatgaaaattcaaaaacctaaaaagaaaattaaaaacaaaattaaacaaacaaaagatgaacttaatgataaacttgaacatacaaaagatgaactttatgataaacttgaacaaacaaaagatgaacttaaacaagaacttaaagaagttaaaacattgttaactaatctcattaataatttaaatattaatagtaataatatttaggatattaaatattttatataagctgattttttttatattc
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@meso_cacase at
DBCLS
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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