LOCUS       XM_025184285            4811 bp    mRNA    linear   VRT 04-JUN-2018
DEFINITION  PREDICTED: Pelodiscus sinensis NRDE-2, necessary for RNA
            interference, domain containing (NRDE2), transcript variant X5,
            mRNA.
ACCESSION   XM_025184285
VERSION     XM_025184285.1
DBLINK      BioProject: PRJNA221645
KEYWORDS    RefSeq.
SOURCE      Pelodiscus sinensis (Chinese soft-shelled turtle)
  ORGANISM  Pelodiscus sinensis
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Testudinata; Testudines; Cryptodira; Trionychia;
            Trionychidae; Pelodiscus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_005854923.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Pelodiscus sinensis Annotation
                                           Release 102
            Annotation Version          :: 102
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.0
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4811
                     /organism="Pelodiscus sinensis"
                     /mol_type="mRNA"
                     /isolate="Daiwa-1"
                     /db_xref="taxon:13735"
                     /chromosome="Unknown"
                     /sex="female"
                     /country="Japan: Saga"
     gene            1..4811
                     /gene="NRDE2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 4 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:102461156"
     CDS             213..3368
                     /gene="NRDE2"
                     /codon_start=1
                     /product="protein NRDE2 homolog isoform X3"
                     /protein_id="XP_025040070.1"
                     /db_xref="GeneID:102461156"
                     /translation="

MFYEVFFSRAEQNSRAVKICLEDITSNVATNRFVWLEDIQALTAETFRTDKKPDPANWEYKSLYRGDIARYKRKGDFCLGIDLKKQRITWEGPMVEKKQSHKRPERYFTKNSVQLLRAGGIPVYSKSQTYSSDPSTFILVSQVDSDAPPATTRVNPLGIYDPLTTLWLQGKGPPEYETSKQQASQETSENVNSFLMAKVEDYNKRVRENPRDVHTWMEFVSFQDELMRGPSLYAFKEGEQEIRRKSFKLILEKKLSILERAIESNPNEVDLKLAKLNLCTEFWEPSTLIKEWQKLVFLHPNNPVLWQKYLLFCQSQFSTFSVSKVNSLYGKCLSTLAAIEDGSMVSHPVLPGTEEAMLAIFLQQCHFLRQTGHSEKAVSLFQALVDFTFFKPDNVKDLPTRGQVEFFEPFWDSGEPRFGEKGAKGWKSWMHQQEKGGWIVINKPDEDEEDVDEDPEIKDKTLPKWQIWLDVECSRETRHWMPWRPDKTKKQSEEDCEDPERQVLFDDLGPSLIRLSSPDLQFQLLYSFLQFLGVPCERNLFPSNLYIAMDENSIFDAGHSEGPLTSFDSLLSGVNSIGHMDTMIRERQRIGHCKEGEEFLQNVFHFILPMFSGKEKSNLSVCWLQYEISKVVQCLQVKNKKKLKSQGKKSKKLAKNLLKESENRNSLSLWKLYAYLEWLLGNTEDSRKVFDTALCLAGTDGMRSTQLCNLSLFYASLEVELLESLEETVMSRAVHILTKVTESGPYVPYTGQVLSVNILKARKAYEHALKDYLNESPVTNWDQASGSSQMVSLVGCYALFQYLTVGIDAAVFIYRNISEKLKDFASQKFESIGENLGVQNFPTALEAVTLMHTNLLRYHMKVSIYPLNPLREALMEALKLYPSNQSLWRSYIQIQSKSHNASKARRFFDSVARSTKFLEPWLFAIQAEMMRKKLVESVQRVDVGEIYSTIPETGLTNRIKALFEHAIQSENGAHCPLLWRMYLNFLFSLGNKERSKGLFYKALQNCPWAKVLYMDAIEYFPDQLQEILDLMTEKELRIRVPIEELELLLED"

     misc_feature    348..632
                     /gene="NRDE2"
                     /note="MTR4-interacting domain (MID) found in nuclear
                     exosome regulator NRDE2 and similar proteins; Region:
                     NRDE2_MID; cd22200"
                     /db_xref="CDD:412062"
     misc_feature    order(348..374,381..386,396..401,405..407,411..455,
                     462..470,474..482,504..512,522..527,531..536,543..563,
                     588..599,609..632)
                     /gene="NRDE2"
                     /note="MTR4 binding site [polypeptide binding]; other
                     site"
                     /db_xref="CDD:412062"
     misc_feature    816..1811
                     /gene="NRDE2"
                     /note="necessary for RNA interference; Region: NRDE-2;
                     pfam08424"
                     /db_xref="CDD:429988"
ORIGIN      

agaaaagaaaaaagaaaactagagatgaatcaagtaacagtgagtcagacttggatactgagtgtgtgaagggtaaacctcgaggaagtaacacaaaccctgaaagagaagtagcagcattaaaattagattaaatttccattttaactgtttttgaagagaacaaagaacacatacatatttttattgttgcatctgaaaaatgatgaggaatgttttatgaagtatttttctccagagctgaacagaatagcagagcagtgaaaatatgtctagaagatataacatcaaatgttgccaccaatcgctttgtttggcttgaggatattcaggctttgacagcagaaaccttcagaacagacaagaaaccagaccctgcaaactgggaatacaagtcactatatcgtggcgacatagcaagatacaagaggaagggtgacttctgccttggtattgacctaaagaaacaacgtataacttgggaaggtcccatggtagaaaagaaacagtcccacaagcgacctgaacgctacttcacaaaaaacagtgtgcagttactgcgtgcaggtggaattccagtttacagtaaaagccaaacttattcatctgacccaagcacctttatattagtttcacaagtggacagcgatgctcctcctgcaacaaccagggtgaatcctctggggatttatgatccattgactactctgtggttgcaaggaaaaggtcccccagagtatgagacttcaaagcaacaggcatcccaagaaaccagtgaaaatgttaactcttttctaatggcaaaagtggaagactataataagagggtcagagaaaacccaagagatgtccacacttggatggaatttgtttcttttcaggatgaactaatgagaggacccagcctttatgccttcaaggagggagagcaggaaataaggagaaaatcattcaagctaatactagaaaagaaactgtcaattttagagagagctattgaaagcaacccaaatgaggttgatctgaagcttgccaagctgaacctttgtacagaattctgggaaccatcaactttgatcaaagaatggcagaaactggtttttttgcatcccaataatccagttttatggcagaaatatctcttattttgtcaaagtcagttcagtaccttttcagtttcaaaagtcaatagtttatatggaaaatgtttgagcactttggcagctatagaggacggcagtatggtatcacatcctgtactacctggcacagaagaagctatgttagctatctttcttcagcagtgccattttcttagacagacgggccattctgagaaagctgtgtctttgttccaagccctggttgatttcaccttctttaaacctgacaatgtaaaagatctgccaacaagaggacaggtggagttctttgaaccattttgggacagtggagagcctcggtttggagaaaaaggagcaaaaggctggaaatcatggatgcatcaacaagaaaagggaggctggattgttatcaataaacctgatgaagatgaggaagatgtagatgaagatccagaaataaaggataaaactctacccaaatggcaaatttggcttgacgttgaatgttcccgtgaaacaaggcattggatgccttggcgacctgacaaaactaaaaaacagagtgaagaagattgtgaagacccagagagacaggtattatttgatgatcttgggccatctttaatcagactttctagtccagatcttcagtttcagctgctatattcatttctacaatttttgggagtcccatgtgagcgtaatctctttccttcaaatctctatatcgctatggatgagaatagcatctttgatgctgggcattctgaagggccactgacttcttttgactcactgctttctggagtcaatagtattggccatatggatacaatgatcagagagagacagcgcataggacactgtaaggaaggagaggagttcctacagaatgtctttcatttcatactgccaatgttttcaggaaaggaaaagtcaaacctgtctgtctgttggctacaatatgaaatctcaaaggttgttcagtgtctccaagtgaaaaacaagaagaaactgaagtcacaggggaagaagagcaaaaaactagccaagaatctccttaaggaatctgaaaaccgaaacagcctttccctctggaaactgtatgcttacttggagtggttacttggcaacacagaagattctagaaaagtgtttgatacagctctttgtttggcgggaactgacgggatgagaagtacccaactctgtaatctgagcttgttttatgcttcactggaagtggagctgttagagagtctggaggaaactgttatgtcacgtgctgtacatatattgaccaaagtgactgaaagtggaccatatgtgccttatactgggcaggtgttatctgtgaatatcttgaaagctcggaaagcatatgagcatgcattgaaagattatttaaatgaaagccctgtcactaactgggatcaggccagtggttctagccaaatggttagtttagttggttgttatgcgcttttccagtatttgactgttgggattgatgctgctgtattcatatatagaaatatttctgaaaagcttaaagattttgcttcacagaagtttgaaagtattggagaaaatcttggcgttcagaattttcccactgcccttgaagctgtcacactcatgcacacaaatttactcaggtaccatatgaaagttagcatttatcctttaaatccactgcgagaggcactaatggaagctttgaagctgtatcctagcaaccagtctctttggagatcatatatccagatccaaagcaagtctcacaacgctagcaaagcacgaagattttttgatagcgtcgcaaggtctaccaagttcctagagccatggctgtttgcaatccaagccgagatgatgagaaagaagcttgttgagagtgtccaaagagtagatgttggagaaatatattcaacaattcctgaaaccggattaacgaatcggatcaaagctttatttgaacatgcaattcagagtgaaaatggtgcccattgtccgttgctgtggagaatgtatttgaattttctgttttctctcggaaataaagaaaggagcaaaggactattttacaaagctcttcagaactgtccctgggcaaaggtgctgtatatggatgcaatagaatattttccagatcagctgcaagagatcctagatctaatgactgaaaaagaattgagaataagagtacctatagaagaactggaactgctactggaagattaaaagaagatggtgcaagaacaaaaaccaaaacaatacacaaagataagataaggggggaagaaagaaagttgatattcaaaagaccaactataatggtctgtcttcaacaattatcttttattagaacttcaatggaccatgcacgtatttttcttactaagaataatttgttaaaaacgtagctattaatattccacacagctagctgtaaatgtgtaaatttgttccacatcttgtagtggggtgcttttatacatgtaaatacatctatttttctggaaaatacagcagaatccacaaaattatacctaccaataattaatttgccattgagccacacctgcaactcgtatgctcctatttaatacagccattccctttaattcagtggaatgtcaaggaagcacaggaagtacacctctgtcaaatgtatgctttacaatcttctgttgtcaacaggctaaatatgtcctggttggtgtggatgtgtatctaaatatccacatatttcagttctagtgtcttgctgtctatacaaaacaagaagattagtaaaactcttgaggaaaatatccagtcagacaattagctcaattgataaactattgttaaaagtcaaaaccttttttggcaagatatagggttgactttgcatatgtatatgatgtgacaattctaatgtaaatatttataaaaatacttattttaatttagttggttcttgaattttttatttttttttaaatgttaattttggtgaggaaaatgtttacacctttattctaatatctcttttctagcagcaaattttttttgttttaaatatgcaaactattataattaacttcccttttcctcagcatacattggggaattgtcatgagacaaattcctacctactatctctaggtatcatgaggtattctgagatgctctttcctaatgtggtttctcgggttattagcttatttatagcagtgttttacaggctactcactactgctataaaatagaatatggctcctgtccagtccagtgctcatcagctgatgagatctgttagaatttcaacacaggctcttaagaccattttagattgcattgtaactcatttatccatctttgtgaacttattttgaaaatagaggatgtgctaatgtttaaccatgttcttaaattttataaaaattctgtggcagcttttactgaagatcctacattgcattactaagtacatttagccacatattgttgctctggttaactgtaagtctgaccacattttgtttcaaaaataatgaattcattgatctttttcttaaaaaaaaaatccattacttctaaaaccccagtttcatgtaaatatgagagatctatttattagttcccataatagaagaactagaggacaccaaatgaaattaatgggtagcaggtttaaaa

//